Bidirectional Long Short-Term Memory (LSTM) is a special kind of Recurrent Neural Network (RNN) architecture which is designed to model sequences and their long-range dependencies more precisely than RNNs. This paper proposes to use deep bidirectional LSTM for sequence modeling as an approach to perform locality-sensitive hashing (LSH)-based sequence alignment. In particular, we use the deep bidirectional LSTM to learn features of LSH. The obtained LSH is then can be utilized to perform sequence alignment. We demonstrate the feasibility of the modeling sequences using the proposed LSTM-based model by aligning the short read queries over the reference genome. We use the human reference genome as our training dataset, in addition to a set of short reads generated using Illumina sequencing technology. The ultimate goal is to align query sequences into a reference genome. We first decompose the reference genome into multiple sequences. These sequences are then fed into the bidirectional LSTM model and then mapped into fixed-length vectors. These vectors are what we call the trained LSH, which can then be used for sequence alignment. The case study shows that using the introduced LSTM-based model, we achieve higher accuracy with the number of epochs.
Learning from set-structured data is an essential problem with many applications in machine learning and computer vision. This paper focuses on non-parametric and data-independent learning from set-structured data using approximate nearest neighbor (ANN) solutions, particularly locality-sensitive hashing. We consider the problem of set retrieval from an input set query. Such retrieval problem requires: 1) an efficient mechanism to calculate the distances/dissimilarities between sets, and 2) an appropriate data structure for fast nearest neighbor search. To that end, we propose Sliced-Wasserste…
Department of Applied Mathematics, University of Colorado, Boulder（科罗拉多大学博尔德分校应用数学系）
We discuss the problem of performing similarity search over function spaces. To perform search over such spaces in a reasonable amount of time, we use {\it locality-sensitive hashing} (LSH). We present two methods that allow LSH functions on $\mathbb{R}^N$ to be extended to $L^p$ spaces: one using function approximation in an orthonormal basis, and another using (quasi-)Monte Carlo-style techniques. We use the presented hashing schemes to construct an LSH family for Wasserstein distance over one-dimensional, continuous probability distributions.
Large scale agglomerative clustering is hindered by computational burdens. We propose a novel scheme where exact inter-instance distance calculation is replaced by the Hamming distance between Kernelized Locality-Sensitive Hashing (KLSH) hashed values. This results in a method that drastically decreases computation time. Additionally, we take advantage of certain labeled data points via distance metric learning to achieve a competitive precision and recall comparing to K-Means but in much less computation time.
We propose a learning method with feature selection for Locality-Sensitive Hashing. Locality-Sensitive Hashing converts feature vectors into bit arrays. These bit arrays can be used to perform similarity searches and personal authentication. The proposed method uses bit arrays longer than those used in the end for similarity and other searches and by learning selects the bits that will be used. We demonstrated this method can effectively perform optimization for cases such as fingerprint images with a large number of labels and extremely few data that share the same labels, as well as verifyin…
Recently it was shown that the problem of Maximum Inner Product Search (MIPS) is efficient and it admits provably sub-linear hashing algorithms. Asymmetric transformations before hashing were the key in solving MIPS which was otherwise hard. In the prior work, the authors use asymmetric transformations which convert the problem of approximate MIPS into the problem of approximate near neighbor search which can be efficiently solved using hashing. In this work, we provide a different transformation which converts the problem of approximate MIPS into the problem of approximate cosine similarity s…
We present a simple but powerful reinterpretation of kernelized locality-sensitive hashing (KLSH), a general and popular method developed in the vision community for performing approximate nearest-neighbor searches in an arbitrary reproducing kernel Hilbert space (RKHS). Our new perspective is based on viewing the steps of the KLSH algorithm in an appropriately projected space, and has several key theoretical and practical benefits. First, it eliminates the problematic conceptual difficulties that are present in the existing motivation of KLSH. Second, it yields the first formal retrieval perf…
Random binning features, introduced in the seminal paper of Rahimi and Recht (2007), are an efficient method for approximating a kernel matrix using locality sensitive hashing. Random binning features provide a very simple and efficient way of approximating the Laplace kernel but unfortunately do not apply to many important classes of kernels, notably ones that generate smooth Gaussian processes, such as the Gaussian kernel and Matern kernel. In this paper, we introduce a simple weighted version of random binning features and show that the corresponding kernel function generates Gaussian proce…
Locality-sensitive hashing converts high-dimensional feature vectors, such as image and speech, into bit arrays and allows high-speed similarity calculation with the Hamming distance. There is a hashing scheme that maps feature vectors to bit arrays depending on the signs of the inner products between feature vectors and the normal vectors of hyperplanes placed in the feature space. This hashing can be seen as a discretization of the feature space by hyperplanes. If labels for data are given, one can determine the hyperplanes by using learning algorithms. However, many proposed learning method…
We propose a new class of data-independent locality-sensitive hashing (LSH) algorithms based on the fruit fly olfactory circuit. The fundamental difference of this approach is that, instead of assigning hashes as dense points in a low dimensional space, hashes are assigned in a high dimensional space, which enhances their separability. We show theoretically and empirically that this new family of hash functions is locality-sensitive and preserves rank similarity for inputs in any `p space. We then analyze different variations on this strategy and show empirically that they outperform existing …
Web application security has become a major concern in recent years, as more and more content and services are available online. A useful method for identifying security vulnerabilities is black-box testing, which relies on an automated crawling of web applications. However, crawling Rich Internet Applications (RIAs) is a very challenging task. One of the key obstacles crawlers face is the state similarity problem: how to determine if two client-side states are equivalent. As current methods do not completely solve this problem, a successful scan of many real-world RIAs is still not possible. …
Rice University（莱斯大学）；Institute for Advanced Study（高等研究院）；Princeton University（普林斯顿大学）
We present the first provable Least-Squares Value Iteration (LSVI) algorithms that have runtime complexity sublinear in the number of actions. We formulate the value function estimation procedure in value iteration as an approximate maximum inner product search problem and propose a locality sensitive hashing (LSH) [Indyk and Motwani STOC'98, Andoni and Razenshteyn STOC'15, Andoni, Laarhoven, Razenshteyn and Waingarten SODA'17] type data structure to solve this problem with sublinear time complexity. Moreover, we build the connections between the theory of approximate maximum inner product sea…
Computer Science and Artificial Intelligence Laboratory（计算机科学与人工智能实验室）；Massachusetts Institute of Technology（麻省理工学院）
The availability of massive healthcare data repositories calls for efficient tools for data-driven medicine. We introduce a distributed system for Stratified Locality Sensitive Hashing to perform fast similarity-based prediction on large medical waveform datasets. Our implementation, for an ICU use case, prioritizes latency over throughput and is targeted at a cloud environment. We demonstrate our system on Acute Hypotensive Episode prediction from Arterial Blood Pressure waveforms. On a dataset of $1.37$ million points, we show scaling up to $40$ processors and a $21\times$ speedup in number …
Finding similar data in high-dimensional spaces is one of the important tasks in multimedia applications. Approaches introduced to find exact searching techniques often use tree-based index structures which are known to suffer from the curse of the dimensionality problem that limits their performance. Approximate searching techniques prefer performance over accuracy and they return good enough results while achieving a better performance. Locality Sensitive Hashing (LSH) is one of the most popular approximate nearest neighbor search techniques for high-dimensional spaces. One of the most time-…
Computing approximate nearest neighbors in high dimensional spaces is a central problem in large-scale data mining with a wide range of applications in machine learning and data science. A popular and effective technique in computing nearest neighbors approximately is the locality-sensitive hashing (LSH) scheme. In this paper, we aim to develop LSH schemes for distance functions that measure the distance between two probability distributions, particularly for f-divergences as well as a generalization to capture mutual information loss. First, we provide a general framework to design LHS scheme…
Since Hamming distances can be calculated by bitwise computations, they can be calculated with less computational load than L2 distances. Similarity searches can therefore be performed faster in Hamming distance space. The elements of Hamming distance space are bit strings. On the other hand, the arrangement of hyperplanes induce the transformation from the feature vectors into feature bit strings. This transformation method is a type of locality-sensitive hashing that has been attracting attention as a way of performing approximate similarity searches at high speed. Supervised learning of hyp…
The analysis of the compression effects in generative adversarial networks (GANs) after training, i.e. without any fine-tuning, remains an unstudied, albeit important, topic with the increasing trend of their computation and memory requirements. While existing works discuss the difficulty of compressing GANs during training, requiring novel methods designed with the instability of GANs training in mind, we show that existing compression methods (namely clipping and quantization) may be directly applied to compress GANs post-training, without any additional changes. High compression levels may …
Sister Nibedita Govt. General Degree College for Girls（尼贝迪塔修女女子政府普通学位学院）；Indian Statistical Institute（印度统计研究所）
Single Molecule Real-Time (SMRT) sequencing is a recent advancement of Next Gen technology developed by Pacific Bio (PacBio). It comes with an explosion of long and noisy reads demanding cutting edge research to get most out of it. To deal with the high error probability of SMRT data, a novel contextual Locality Sensitive Hashing (conLSH) based algorithm is proposed in this article, which can effectively align the noisy SMRT reads to the reference genome. Here, sequences are hashed together based not only on their closeness, but also on similarity of context. The algorithm has $\mathcal{O}(n^{…
In recent, deep learning has become the most popular direction in machine learning and artificial intelligence. However, preparation of training data is often a bottleneck in the lifecycle of deploying a deep learning model for production or research. Reusing models for inferencing a dataset can greatly save the human costs required for training data creation. Although there exist a number of model sharing platform such as TensorFlow Hub, PyTorch Hub, DLHub, most of these systems require model uploaders to manually specify the details of each model and model downloaders to screen keyword searc…
Recently, inspired by Transformer, self-attention-based scene text recognition approaches have achieved outstanding performance. However, we find that the size of model expands rapidly with the lexicon increasing. Specifically, the number of parameters for softmax classification layer and output embedding layer are proportional to the vocabulary size. It hinders the development of a lightweight text recognition model especially applied for Chinese and multiple languages. Thus, we propose a lightweight scene text recognition model named Hamming OCR. In this model, a novel Hamming classifier, wh…
Locality-Sensitive Hashing-Based Efficient Point Transformer with Applications in High-Energy Physics
Georgia Institute of Technology（佐治亚理工学院）；Beijing University of Posts and Telecommunications（北京邮电大学）；Purdue University（普渡大学）；University of California San Diego（加利福尼亚大学圣迭戈分校）
Locality-Sensitive Hashing-Based Efficient Point Transformer for Charged Particle Reconstruction
Georgia Institute of Technology（佐治亚理工学院）；Purdue University（普渡大学）；University of Washington（华盛顿大学）；Princeton University（普林斯顿大学）；University of California San Diego（加州大学圣地亚哥分校）
Speech enhancement tasks have seen significant improvements with the advance of deep learning technology, but with the cost of increased computational complexity. In this study, we propose an adaptive boosting approach to learning locality sensitive hash codes, which represent audio spectra efficiently. We use the learned hash codes for single-channel speech denoising tasks as an alternative to a complex machine learning model, particularly to address the resource-constrained environments. Our adaptive boosting algorithm learns simple logistic regressors as the weak learners. Once trained, the…
We present PSEUDo, an adaptive feature learning technique for exploring visual patterns in multi-track sequential data. Our approach is designed with the primary focus to overcome the uneconomic retraining requirements and inflexible representation learning in current deep learning-based systems. Multi-track time series data are generated on an unprecedented scale due to increased sensors and data storage. These datasets hold valuable patterns, like in neuromarketing, where researchers try to link patterns in multivariate sequential data from physiological sensors to the purchase behavior of p…
Locality Sensitive Hashing with Extended Differential Privacy
Macquarie University（麦考瑞大学）；Inria（法国国家信息与自动化研究所）；École Polytechnique（巴黎综合理工学院）；National Institute of Advanced Industrial Science and Technology (AIST)（日本产业技术综合研究所）
Entity resolution seeks to merge databases as to remove duplicate entries where unique identifiers are typically unknown. We review modern blocking approaches for entity resolution, focusing on those based upon locality sensitive hashing (LSH). First, we introduce $k$-means locality sensitive hashing (KLSH), which is based upon the information retrieval literature and clusters similar records into blocks using a vector-space representation and projections. Second, we introduce a subquadratic variant of LSH to the literature, known as Densified One Permutation Hashing (DOPH). Third, we propose …
Nearest neighbors search is a fundamental problem in various research fields like machine learning, data mining and pattern recognition. Recently, hashing-based approaches, e.g., Locality Sensitive Hashing (LSH), are proved to be effective for scalable high dimensional nearest neighbors search. Many hashing algorithms found their theoretic root in random projection. Since these algorithms generate the hash tables (projections) randomly, a large number of hash tables (i.e., long codewords) are required in order to achieve both high precision and recall. To address this limitation, we propose a …
In large scale systems, approximate nearest neighbour search is a crucial algorithm to enable efficient data retrievals. Recently, deep learning-based hashing algorithms have been proposed as a promising paradigm to enable data dependent schemes. Often their efficacy is only demonstrated on data sets with fixed, limited numbers of classes. In practical scenarios, those labels are not always available or one requires a method that can handle a higher input variability, as well as a higher granularity. To fulfil those requirements, we look at more flexible similarity measures. In this work, we p…
We present the first provably sublinear time algorithm for approximate \emph{Maximum Inner Product Search} (MIPS). Our proposal is also the first hashing algorithm for searching with (un-normalized) inner product as the underlying similarity measure. Finding hashing schemes for MIPS was considered hard. We formally show that the existing Locality Sensitive Hashing (LSH) framework is insufficient for solving MIPS, and then we extend the existing LSH framework to allow asymmetric hashing schemes. Our proposal is based on an interesting mathematical phenomenon in which inner products, after indep…
UC San Diego（加利福尼亚大学圣地亚哥分校）；MIT-IBM Watson AI Lab（麻省理工学院-IBM沃森人工智能实验室）；Princeton University（普林斯顿大学）；IBM Research（IBM研究院）
The fruit fly Drosophila's olfactory circuit has inspired a new locality sensitive hashing (LSH) algorithm, FlyHash. In contrast with classical LSH algorithms that produce low dimensional hash codes, FlyHash produces sparse high-dimensional hash codes and has also been shown to have superior empirical performance compared to classical LSH algorithms in similarity search. However, FlyHash uses random projections and cannot learn from data. Building on inspiration from FlyHash and the ubiquity of sparse expansive representations in neurobiology, our work proposes a novel hashing algorithm BioHas…
The probability Jaccard similarity was recently proposed as a natural generalization of the Jaccard similarity to measure the proximity of sets whose elements are associated with relative frequencies or probabilities. In combination with a hash algorithm that maps those weighted sets to compact signatures which allow fast estimation of pairwise similarities, it constitutes a valuable method for big data applications such as near-duplicate detection, nearest neighbor search, or clustering. This paper introduces a class of one-pass locality-sensitive hash algorithms that are orders of magnitude …
Anomaly detection is one of the frequent and important subroutines deployed in large-scale data processing systems. Even being a well-studied topic, existing techniques for unsupervised anomaly detection require storing significant amounts of data, which is prohibitive from memory and latency perspective. In the big-data world existing methods fail to address the new set of memory and latency constraints. In this paper, we propose ACE (Arrays of (locality-sensitive) Count Estimators) algorithm that can be 60x faster than the ELKI package~\cite{DBLP:conf/ssd/AchtertBKSZ09}, which has the fastes…
All-pairs set similarity is a widely used data mining task, even for large and high-dimensional datasets. Traditionally, similarity search has focused on discovering very similar pairs, for which a variety of efficient algorithms are known. However, recent work highlights the importance of finding pairs of sets with relatively small intersection sizes. For example, in a recommender system, two users may be alike even though their interests only overlap on a small percentage of items. In such systems, some dimensions are often highly skewed because they are very popular. Together these two prop…
Bosch Center for Artificial Intelligence（博世人工智能中心）
Graph Neural Networks (GNNs) have emerged as highly successful tools for graph-related tasks. However, real-world problems involve very large graphs, and the compute resources needed to fit GNNs to those problems grow rapidly. Moreover, the noisy nature and size of real-world graphs cause GNNs to over-fit if not regularized properly. Surprisingly, recent works show that large graphs often involve many redundant components that can be removed without compromising the performance too much. This includes node or edge removals during inference through GNNs layers or as a pre-processing step that s…
Technische Unversität Berlin（柏林工业大学）；DFKI（德国人工智能研究中心）；Fraunhofer HHI（弗劳恩霍夫海因里希赫兹研究所）；IIT Hyderabad（海得拉巴印度理工学院）；Korea University（高丽大学）；Max Planck Society（马克斯·普朗克学会）；Berlin Big Data Center（柏林大数据中心）
Locality sensitive hashing (LSH) is a powerful tool for sublinear-time approximate nearest neighbor search, and a variety of hashing schemes have been proposed for different dissimilarity measures. However, hash codes significantly depend on the dissimilarity, which prohibits users from adjusting the dissimilarity at query time. In this paper, we propose {multiple purpose LSH (mp-LSH) which shares the hash codes for different dissimilarities. mp-LSH supports L2, cosine, and inner product dissimilarities, and their corresponding weighted sums, where the weights can be adjusted at query time. It…
We present SLASH (Sketched LocAlity Sensitive Hashing), an MPI (Message Passing Interface) based distributed system for approximate similarity search over terabyte scale datasets. SLASH provides a multi-node implementation of the popular LSH (locality sensitive hashing) algorithm, which is generally implemented on a single machine. We show how we can append the LSH algorithm with heavy hitters sketches to provably solve the (high) similarity search problem without a single distance computation. Overall, we mathematically show that, under realistic data assumptions, we can identify the near-nei…
