Spontaneous pattern formation is a fundamental scientific problem that has received much attention since the seminal theoretical work of Turing on reaction-diffusion systems. In molecular biophysics, this phenomena often takes place under the influence of large fluctuations. It is then natural to inquire about the precision of such pattern. In particular, spontaneous pattern formation is a nonequilibrium phenomenon, and the relation between the precision of a pattern and the thermodynamic cost associated with it remains unexplored. Here, we analyze this relation with a paradigmatic stochastic reaction-diffusion model, the Brusselator in one spatial dimension. We find that the precision of the pattern is maximized for an intermediate thermodynamic cost, i.e., increasing the thermodynamic cost beyond this value makes the pattern less precise. Even though fluctuations get less pronounced with an increase in thermodynamic cost, we argue that larger fluctuations can also have a positive effect on the precision of the pattern.
Accurate and robust spatial orders are ubiquitous in living systems. In 1952, Alan Turing proposed an elegant mechanism for pattern formation based on spontaneous breaking of the spatial translational symmetry in the underlying reaction-diffusion system. Much is understood about dynamics and structure of Turing patterns. However, little is known about the energetic cost of Turing pattern. Here, we study nonequilibrium thermodynamics of a small spatially extended biochemical reaction-diffusion system by using analytical and numerical methods. We find that the onset of Turing pattern requires a …
In this paper, I derive a closed expression for how precisely a small-scaled system can follow a pre-defined trajectory, while keeping its dissipation below a fixed limit. The total amount of dissipation is approximately inversely proportional to the expected deviation from the pre-defined trajectory. The optimal driving protocol is derived and it is shown that associated time-dependent probability distribution conserves its shape throughout the protocol. Potential applications are discussed in the context of bit erasure and electronic circuits.
We compare the relation between dispersion and dissipation for two random variables that can be used to characterize the precision of a Brownian clock. The first random variable is the current between states. In this case, a certain precision requires a minimal energetic cost determined by a known thermodynamic uncertainty relation. We introduce a second random variable that is a certain linear combination of two random variables, each of which is the time a stochastic trajectory spends in a state. Whereas the first moment of this random variable is equal to the average probability current, it…
Single cells often generate precise responses by involving dissipative out-of-thermodynamic equilibrium processes in signaling networks. The available free energy to fuel these processes could become limited depending on the metabolic state of an individual cell. How does limiting dissipation affect the kinetics of high precision responses in single cells? I address this question in the context of a kinetic proofreading scheme used in a simple model of early time T cell signaling. I show using exact analytical calculations and numerical simulations that limiting dissipation qualitatively chang…
Maximizing the speed and precision of communication while minimizing power dissipation is a fundamental engineering design goal. Also, biological systems achieve remarkable speed, precision and power efficiency using poorly understood physical design principles. Powerful theories like information theory and thermodynamics do not provide general limits on power, precision and speed. Here we go beyond these classical theories to prove that the product of precision and speed is universally bounded by power dissipation in any physical communication channel whose dynamics is faster than that of the…
For classical ballistic transport in a multi-terminal geometry, we derive a universal trade-off relation between total dissipation and the precision, at which particles are extracted from individual reservoirs. Remarkably, this bound becomes significantly weaker in presence of a magnetic field breaking time-reversal symmetry. By working out an explicit model for chiral transport enforced by a strong magnetic field, we show that our bounds are tight. Beyond the classical regime, we find that, in quantum systems far from equilibrium, correlated exchange of particles makes it possible to exponent…
Universal thermokinetic decomposition of short-time information fluctuations
The Abdus Salam International Center for Theoretical Physics (ICTP)（阿卜杜斯·萨拉姆国际理论物理中心）；Okinawa Institute of Science and Technology Graduate University（冲绳科学技术大学院大学）；University of Padova（帕多瓦大学）；Max Planck Institute for the Physics of Complex Systems（马克斯·普朗克复杂系统物理研究所）
We analyze the stochastic thermodynamics of systems with continuous space of states. The evolution equation, the rate of entropy production, and other results are obtained by a continuous time limit of a discrete time formulation. We point out the role of time reversal and of the dissipation part of the probability current on the production of entropy. We show that the rate of entropy production is a bilinear form in the components of the dissipation probability current with coefficients being the components of the precision matrix related to the Gaussian noise. We have also analyzed a type of…
The operation of many classical and quantum systems in nonequilibrium steady state is constrained by cost-precision (dissipation-fluctuation) tradeoff relations, delineated by the thermodynamic uncertainty relation (TUR). However, coherent quantum electronic nanojunctions can escape such a constraint, showing finite charge current and nonzero entropic cost with vanishing current fluctuations. Here, we analyze the absence, and restoration, of cost-precision tradeoff relations in fermionic nanojunctions under different affinities: voltage and temperature biases. With analytic work and simulation…
The thermodynamic and kinetic uncertainty relations indicate trade-offs between the relative fluctuation of observables and thermodynamic quantities such as dissipation and dynamical activity. Although these relations have been well studied for classical systems, they remain largely unexplored in the quantum regime. In this paper, we investigate such trade-off relations for Markovian open quantum systems whose underlying dynamics are quantum jumps, such as thermal processes and quantum measurement processes. Specifically, we derive finite-time lower bounds on the relative fluctuation of both d…
In classical Markov jump processes, current fluctuations can only be reduced at the cost of increased dissipation. To explore how quantum effects influence this trade-off, we analyze the uncertainty of steady-state currents in Markovian open quantum systems. We first consider three instructive examples and then systematically minimize the product of uncertainty and entropy production for small open quantum systems. As our main result, we find that the thermodynamic cost of reducing fluctuations can be lowered below the classical bound by coherence. We conjecture that this cost can be made arbi…
Thermodynamics serves as a universal means for studying physical systems from an energy perspective. In recent years, with the establishment of the field of stochastic and quantum thermodynamics, the ideas of thermodynamics have been generalized to small fluctuating systems. Independently developed in mathematics and statistics, the optimal transport theory concerns the means by which one can optimally transport a source distribution to a target distribution, deriving a useful metric between probability distributions, called the Wasserstein distance. Despite their seemingly unrelated nature, a…
Thermodynamic uncertainty relations (TURs) represent one of the few broad-based and fundamental relations in our toolbox for tackling the thermodynamics of nonequilibrium systems. One form of TUR quantifies the minimal energetic cost of achieving a certain precision in determining a nonequilibrium current. In this initial stage of our research program, our goal is to provide the quantum theoretical basis of TURs using microphysics models of linear open quantum systems where it is possible to obtain exact solutions. In paper [Dong \textit{et al.}, Entropy {\bf 24}, 870 (2022)], we show how TURs…
