We present a revised version of our automated technique using Gaussian processes (GPs) to detect Damped Lyman-$α$ absorbers (DLAs) along quasar (QSO) sightlines. The main improvement is to allow our Gaussian process pipeline to detect multiple DLAs along a single sightline. Our DLA detections are regularised by an improved model for the absorption from the Lyman-$α$ forest which improves performance at high redshift. We also introduce a model for unresolved sub-DLAs which reduces mis-classifications of absorbers without detectable damping wings. We compare our results to those of two different large-scale DLA catalogues and provide a catalogue of the processed results of our Gaussian process pipeline using 158 825 Lyman-$α$ spectra from SDSS data release 12. We present updated estimates for the statistical properties of DLAs, including the column density distribution function (CDDF), line density ($dN/dX$), and neutral hydrogen density ($Ω_{\textrm{DLA}}$).
(Abridged for arXiv) We report the discovery of an unusual, extremely dust-rich and metal-strong damped \lya absorption system (DLA) at a redshift $z_{a}=2.4596$ toward the quasar SDSS J115705.52+615521.7 (hereafter J1157+6155) with an emission-line redshift $z_{e}=2.5125$. Its neutral hydrogen column density $N_{\hi} = 10^{21.8\pm0.2}$ cm$^{-2}$ is among the highest values measured in quasar DLAs. The measured metal column density is $N_{ZnII}\approx 10^{13.8}$ cm$^{-2}$, which is about 1.5 times larger than the largest value in any previously observed quasar DLAs. The best-fit curve is a MW-…
We present the characteristics of the Damped Lyman-$α$ (DLA) systems found in the data release DR16 of the extended Baryon Oscillation Spectroscopic Survey (eBOSS) of the Sloan Digital Sky Survey (SDSS). DLAs were identified using the convolutional neural network (CNN) of~\cite{Parks2018}. A total of 117,458 absorber candidates were found with $2 \leq \zdla \leq 5.5$ and $19.7 \leq \lognhi \leq 22$, including 57,136 DLA candidates with $\lognhi \geq 20.3$. Mock quasar spectra were used to estimate DLA detection efficiency and the purity of the resulting catalog. Restricting the quasar sample t…
We develop an automated technique for detecting damped Lyman-$α$ absorbers (DLAs) along spectroscopic lines of sight to quasi-stellar objects (QSOs or quasars). The detection of DLAs in large-scale spectroscopic surveys such as SDSS-III sheds light on galaxy formation at high redshift, showing the nucleation of galaxies from diffuse gas. We use nearly 50 000 QSO spectra to learn a novel tailored Gaussian process model for quasar emission spectra, which we apply to the DLA detection problem via Bayesian model selection. We propose models for identifying an arbitrary number of DLAs along a given…
We have studied a sample of 1084 intervening absorption systems with 2.15$\le z_{ab}\le$5.2, having log(N$_{\rm HI}$) $>$ 20.0 in the spectra of QSOs in Sloan Digital Sky Survey (SDSS) data release 7 (DR7), with the aim of understanding the nature and abundance of the dust and the chemical abundances in the DLA absorbers. Composite spectra were constructed for the full sample and several subsamples, chosen on the basis of absorber and QSO properties. Average extinction curves were obtained for the samples by comparing their geometric mean composite spectra with those of two samples of QSOs, ma…
We present a systematic study of the impact of a dust bias on samples of damped Lyman-$α$ absorbers (DLAs). This bias arises as an effect of the magnitude and colour criteria utilized in the Sloan Digital Sky Survey (SDSS) quasar target selection up until data release 7 (DR7). The bias has previously been quantified assuming only a contribution from the dust obscuration. In this work, we apply the full set of magnitude and colour criteria used up until SDSS DR7 in order to quantify the full impact of dust biasing against dusty and metal-rich DLAs. We apply the quasar target selection algorithm…
In an effort to study Damped Lyman Alpha galaxies at low redshift, we have been using the Sloan Digital Sky Survey to identify galaxies projected onto QSO sightlines and to characterize their optical properties. For low redshift galaxies, the HI 21cm emission line can be used as an alternate tool for identifying possible DLA galaxies, since HI emitting galaxies typically exhibit HI columns that are larger than the classical DLA limit. Here we report on follow-up HI 21 cm emission line observations of two DLA candidates that are both low-redshift spiral galaxies, Mrk 1456 and SDSS J211701.26-00…
We present chemical abundance measurements for 47 damped Lyman-alpha systems (DLAs), 30 at z>4, observed with the Echellette Spectrograph and Imager and the High Resolution Echelle Spectrometer on the Keck telescopes. HI column densities of the DLAs are measured with Voigt profile fits to the Lyman-alpha profiles, and we find an increased number of false DLA identifications with SDSS at z>4 due to the increased density of the Lyman-alpha forest. Ionic column densities are determined using the apparent optical depth method, and we combine our new metallicity measurements with 195 from previous …
The nature of the galaxies that give rise to absorption lines, such as damped Lyman-alpha systems (DLAs) or strong MgII lines, in quasar spectra is difficult to investigate in emission. Taking advantage of the total absorption of the QSO light bluewards of the Lyman limit of two DLAs at z>3.4, we look for the continuum emission from intervening galaxies at z~2 that are identified via strong metal absorption lines. The MgII absorbers have equivalent width large enough to be potential DLA systems. Deep images are obtained with the FOcal Reducer and Spectrograph (FORS1) on the Very Large Telescop…
The Baryon Oscillation Spectroscopic Survey of SDSS-III has provided an unprecedentedly large sample of Damped \lya systems (DLAs), the largest repositories of neutral hydrogen in the Universe. This DLA sample has been used to determine the DLA bias factor from their cross-correlation with the \lya forest absorption in \cite{FontRibera2012,Perez2018}, showing that DLAs are associated with relatively massive halos. However, the low resolution and signal-to-noise of BOSS spectra do not allow precise measurements of the DLA metal lines. We define a metal strength parameter, $S$, based on combinin…
The dust-content of damped Lyman-alpha systems (DLAs) is an important observable for understanding their origin and the neutral gas reservoirs of galaxies. While the average colour-excess of DLAs, E(B-V), is known to be <15 milli-magnitudes (mmag), both detections and non-detections with ~2 mmag precision have been reported. Here we find 3.2-sigma statistical evidence for DLA dust-reddening of 774 Sloan Digital Sky Survey (SDSS) quasars by comparing their fitted spectral slopes to those of ~7000 control quasars. The corresponding E(B-V) is 3.0 +/- 1.0 mmag, assuming a Small Magellanic Cloud (S…
We searched for evidence of reddening of background SDSS QSO spectra due to dust in intervening DLA systems. We utilise the Data Releases 5 and 7 to arrive at sample sizes of 475 (DR5) and 676 (DR7) absorbers, based on two different published lists of SDSS DLAs. Both samples span roughly the redshift range of 2.2 < z_abs < 5.2, with a mean of z~3.0, and the majority of the DLAs (75%) below z=3.3. We construct geometric mean spectra in the absorber restframes ranging from 1240 to ~2800 A, and composite spectra of samples matching the 'DLA' QSOs in i band magnitude and emission redshift z_em, bu…
We searched quasar spectra from the SDSS-III Baryon Oscillation Spectroscopic Survey (BOSS) for the rare occurrences where a strong damped Lyman-alpha absorber (DLA) blocks the Broad Line Region emission from the quasar and acts as a natural coronagraph to reveal narrow Lyα emission from the host galaxy. We define a statistical sample of 31 DLAs in Data Release 9 (DR9) with log N(HI) > 21.3 cm^-2 located at less than 1500 km s^-1 from the quasar redshift. In 25% (8) of these DLAs, a strong narrow Lyα emission line is observed with flux ~25 x 10^-17 erg s^-1 cm^-2 on average. For DLAs without t…
We present the elemental abundance and H2 content measurements of a Damped Lyman-α (DLA) system with an extremely large H i column density, log N(H i) (cm-2) = 22.0+/-0.10, at zabs = 3.287 towards the QSO SDSS J 081634+144612. We measure column densities of H2, C i, C i^*, Zn ii, Fe ii, Cr ii, Ni ii and Si ii from a high signal-to-noise and high spectral resolution VLT-UVES spectrum. The overall metallicity of the system is [Zn/H] = -1.10 +/- 0.10 relative to solar. Two molecular hydrogen absorption components are seen at z = 3.28667 and 3.28742 (a velocity separation of \approx 52 km s-1) in …
Quasar damped Ly-alpha (DLA) absorption line systems with redshifts z<1.65 are used to trace neutral gas over approximately 70 per cent of the most recent history of the Universe. However, such systems fall in the UV and are rarely found in blind UV spectroscopic surveys. Therefore, it has been difficult to compile a moderate-sized sample of UV DLAs in any narrow cosmic time interval. However, DLAs are easy to identify in low-resolution spectra because they have large absorption rest equivalent widths. We have performed an efficient strong-MgII-selected survey for UV DLAs at redshifts z=[0.42,…
We present the first results from an ongoing survey for Damped Lyman-alpha systems (DLAs) in the spectra of z>2 quasars observed in the course of the Baryon Oscillation Spectroscopic Survey (BOSS), which is part of the Sloan Digital Sky Survey (SDSS) III. Our full (non-statistical) sample, based on Data Release 9, comprises 12,081 systems with log N(HI)>=20, out of which 6,839 have log N(HI)>=20.3. This is the largest DLA sample ever compiled, superseding that from SDSS-II by a factor of seven. Using a statistical sub-sample and estimating systematics from realistic mock data, we probe the N(H…
Damped Lyman-alpha systems (DLAs) seen in the spectra of high-z QSOs allow us to probe the physical conditions in protogalaxies. Our understanding of physical conditions in DLAs at high-z is primarily based on the absorption lines of H_2 molecules and fine-structure transitions. Another important way of probing the thermal state of interstellar medium in these systems is by studying the 21-cm absorption in the spectra of background quasars. Here we report the main results of our GMRT survey to search for 21-cm absorption in a representative and unbiased sample of 35 DLA candidates at 1.10<z<1.…
We present the results of a search for damped Lyman-alpha (DLA) systems in the Sloan Digital Sky Survey II (SDSS), Data Release 7. We use a fully automatic procedure to identify DLAs and derive their column densities. The procedure is checked against the results of previous searches for DLAs in SDSS. We discuss the agreements and differences and show the robustness of our procedure. For each system, we obtain an accurate measurement of the absorber's redshift, the HI column density and the equivalent width of associated metal absorption lines, without any human intervention. We find 1426 absor…
The main feature of the spatial large-scale galaxy distribution is its intricate network of galaxy filaments. This network is spanned by the galaxy locations that can be interpreted as a three-dimensional point distribution. The global properties of the point process can be measured by different statistical methods, which, however, do not describe directly the structure elements. The morphology of the large scale structure, on the other hand, is an important property of the galaxy distribution. Here we apply an object point process with interactions (the Bisous model) to trace and extract the …
We present new estimates for the statistical properties of damped Lyman-$α$ absorbers (DLAs). We compute the column density distribution function at $z>2$, the line density, $\mathrm{d}N/\mathrm{d}X$, and the neutral hydrogen density, $Ω_\mathrm{DLA}$. Our estimates are derived from the DLA catalogue of Garnett 2016, which uses the SDSS-III DR12 quasar spectroscopic survey. This catalogue provides a probability that a given spectrum contains a DLA, allowing us to use even the noisiest data without biasing our results and thus substantially increase our sample size. We measure a non-zero column…
We report on the first Cosmic Origins Spectrograph (COS) observations of damped and sub-damped Lyman-alpha (DLA) systems discovered in a new survey of the gaseous halos of low-redshift galaxies. From observations of 37 sightlines, we have discovered three DLAs and four sub-DLAs. We measure the neutral gas density Omega(HI), and redshift density dN/dz, of DLA and sub-DLA systems at z<0.35. We find dN/dz=0.25 and Omega(HI)=1.4x10^-3 for DLAs, and dN/dz=0.08 with Omega(HI)=4.2x10^-5 for sub-DLAs over a redshift path delta z=11.9. To demonstrate the scientific potential of such systems, we present…
We present a new determination of the large-scale clustering of the CIV forest (i.e., the absorption due to all CIV absorbers) using its cross-correlation with quasars in the Sloan Digital Sky Survey (SDSS) Data Release 12 (DR12). We fit a linear bias model to the measured cross-correlation. We find that the transmission bias of the CIV forest, $b_{Fc}$, at a mean redshift of $z=2.3$, obeys the relation $(1+β_c)b_{F c} = -0.024 \pm 0.003$. Here, $β_{c}$ is the linear redshift space distortion parameter of the CIV absorption, which can only be poorly determined at $β_c=1.1\pm 0.6$ from our data…
We present a survey for low-ionization metal absorption line systems towards 17 QSOs at redshifts z_em=5.8-6.4. Nine of our objects were observed at high resolution with either Keck/HIRES or Magellan/MIKE, and the remainder at moderate resolution with Keck/ESI. The survey spans 5.3 < z_abs < 6.4 and has a pathlength interval ΔX=39.5, or Δz=8.0. In total we detect ten systems, five of which are new discoveries. The line-of-sight number density is consistent with the combined number density at z~3 of DLAs and sub-DLAs, which comprise the main population of low-ionization systems at lower redshif…
We report the first discovery of a QSO damped Ly-alpha (DLA) system by the GALEX satellite. The system was initially identified as an MgII absorption-line system (z_abs=1.028) in the spectrum of SDSS QSO J0203-0910 (z_em=1.58). The presence of unusually strong absorption due to metal lines of ZnII, CrII, MnII, and FeII clearly suggested that it might be a DLA system with N{HI} > 2 x 10^20 atoms cm^-2. Follow-up GALEX NUV grism spectroscopy confirms the system exhibits a DLA absorption line, with a measured HI column density of N{HI} = 1.50+/-0.45 x 10^21 atoms cm^-2. By combining the GALEX N{H…
We study the effects of filaments on galaxy properties in the Sloan Digital Sky Survey (SDSS) Data Release 12 using filaments from the `Cosmic Web Reconstruction' catalogue (Chen et al. 2016), a publicly available filament catalogue for SDSS. Since filaments are tracers of medium-to-high density regions, we expect that galaxy properties associated with the environment are dependent on the distance to the nearest filament. Our analysis demonstrates that a red galaxy or a high-mass galaxy tend to reside closer to filaments than a blue or low-mass galaxy. After adjusting the effect from stellar m…
[Abridged]. Here, we report on the discovery of the galaxy counterpart of the z_abs=2.58 DLA on the line-of-sight to the z=3.07 quasar SDSS J091826.16+163609.0. The galaxy counterpart of the DLA is detected in the OIII 5007 and OII 3726,3729 emission lines redshifted into the NIR at an impact parameter of 16 kpc. Ly-alpha emission is not detected. The upper limit implies that Ly-alpha emission from this galaxy is suppressed by more than an order of magnitude. The DLA is amongst the most metal-rich DLAs studied so far at comparable redshifts. We find evidence for substantial depletion of refrac…
We present a detailed analysis of three extremely strong intervening DLAs (log N(HI)>=21.7) observed towards quasars with VLT/UVES. We measure overall metallicities of [Zn/H]~-1.2, -1.3 and -0.7 at respectively zabs=2.34 towards SDSS J2140-0321 (log N(HI) = 22.4+/-0.1), zabs=3.35 towards SDSS J1456+1609 (log N(HI) = 21.7+/-0.1) and zabs=2.25 towards SDSS J0154+1935 (log N(HI) = 21.75+/-0.15). We detect H2 towards J2140-0321 (log N(H2) = 20.13+/-0.07) and J1456+1609 (log N(H2) = 17.10+/-0.09) and argue for a tentative detection towards J0154+1935. Absorption from the excited fine-structure leve…
We report three additional SINFONI detections of H-alpha emission line from quasar absorbers, two of which are new identifications. These were targeted among a sample of systems with log N(HI)>19.0 and metallicities measured from high-resolution spectroscopy. The detected galaxies are at impact parameters ranging from 6 to 12 kpc from the quasar's line-of-sight. We derive star formation rates (SFR) of a few solar masses per year for the two absorbers at z_abs~1 and SFR=17 solar masses per year for the DLA at z_abs~2. These three detections are found among a sample of 16 DLAs and sub-DLAs (5 at…
We report detections of 39 2175-Å dust extinction bump candidates associated with strong Mg II absorption lines at z$\sim$ 1--1.8 on quasar spectra in Sloan Digital Sky Survey (SDSS) DR3. These strong Mg II absorption line systems are detected among 2,951 strong Mg II absorbers with the rest equivalent width $W_r\lambda2796 >$ 1.0Å at $1.0 < z < 1.86$, which is part of a full sample of 7,421 strong Mg II absorbers compiled by Prochter et al. (2006). The redshift range of the absorbers is chosen to allow the 2175-Å extinction features to be completely covered within the SDSS spectrograph operat…
We perform a Bayesian analysis to study possible features in the primordial inflationary power spectrum of scalar perturbations. In particular, we analyse the possibility of detecting the imprint of these primordial features in the anisotropy temperature power spectrum of the Cosmic Microwave Background (CMB) and also in the matter power spectrum P (k). We use the most recent CMB data provided by the Planck Collaboration and P (k) measurements from the eleventh data release of the Sloan Digital Sky Survey. We focus our analysis on a class of potentials whose features are localised at different…
Mass around dark matter halos can be divided into "infalling" material and "collapsed" material that has passed through at least one pericenter. Analytical models and simulations predict a rapid drop in the halo density profile associated with the transition between these two regimes. Using data from SDSS, we explore the evidence for such a feature in the density profiles of galaxy clusters and investigate the connection between this feature and a possible phase space boundary. We first estimate the steepening of the outer galaxy density profile around clusters: the profiles show an abrupt ste…
SDSS J120602.09+514229.5 is a gravitational lens system formed by a group of galaxies at redshift z=0.422 lensing a bright background galaxy at redshift z=2.001. The main peculiarity of this system is the presence of a luminous satellite near the Einstein radius, that slightly deforms the giant arc. This makes SDSS J120602.09+514229.5 the ideal system to test our grid-based Bayesian lens modelling method, designed to detect galactic satellites independently from their mass-to-light ratio, and to measure the mass of this dwarf galaxy despite its high redshift. Thanks to the pixelized source and…
We have performed an analysis of over 34,000 MgII doublets at 0.36 < z < 2.29 in Sloan Digital Sky Survey (SDSS) Data-Release 7 quasar spectra; the catalog, advanced data products, and tools for analysis are publicly available. The catalog was divided into 14 small redshift bins with roughly 2500 doublets in each, and from Monte-Carlo simulations, we estimate 50% completeness at rest equivalent width W_r ~ 0.8 Angstrom. The equivalent-width frequency distribution is described well by an exponential model at all redshifts, and the distribution becomes flatter with increasing redshift, i.e., the…
We present a generic and fully-automatic method aimed at detecting absorption lines in the spectra of astronomical objects. The algorithm estimates the source continuum flux using a dimensionality reduction technique, nonnegative matrix factorization, and then detects and identifies metal absorption lines. We apply it to a sample of ~100,000 quasar spectra from the Sloan Digital Sky Survey and compile a sample of ~40,000 Mg II & Fe II absorber systems, spanning the redshift range 0.4< z < 2.3. The corresponding catalog is publicly available. We study the statistical properties of these absorbe…
Residual foreground contamination by thermal Sunyaev-Zeldovich (tSZ) effect from galaxy clusters in cosmic microwave background (CMB) maps propagates into the reconstructed CMB lensing field, and thus biases the intrinsic cross-correlation between CMB lensing and large-scale structure (LSS). Through stacking analysis, we show that residual tSZ contamination causes an increment of lensing convergence in the central part of the clusters and a decrement of lensing convergence in the cluster outskirts. We quantify the impact of residual tSZ contamination on cross-correlations between the Planck 20…
The clustering properties of the Universe at large-scales are currently being probed at various redshifts through several cosmological tracers and with diverse statistical estimators. Here we use the three-point angular correlation function (3PACF) to probe the baryon acoustic oscillation (BAO) features in the quasars catalogue from the twelfth data release of the Sloan Digital Sky Survey, with mean redshift z = 2.225, detecting the BAO imprint with a statistical significance of 2.9σ, obtained using lognormal mocks. Following a quasi model-independent approach for the 3PACF, we find the BAO tr…
We searched for star formation activity associated with high-z Damped Lyman-alpha systems (DLAs) with Subaru telescope. We used a set of narrow-band (NB) filters whose central wavelengths correspond to the redshifted Lyman-alpha emission lines of targeted DLA absorbers at 3<z<4.5. We detected one apparent NB-excess object located 3.80 arcsec (~28kpc) away from the quasar SDSS J031036.84+005521.7. Follow-up spectroscopy revealed an asymmetric Lyman-alpha emission at z_em=3.115+/-0.003, which perfectly matches the sub-DLA trough at z_abs=3.1150 with logN(HI)/cm^-2=20.05. The Lyman-alpha luminosi…
Composite spectra of 85 proximate absorbers (log N(HI)>20 and velocity difference between the absorption and emission redshift, dv<10,000 km/s) in the SDSS are used to investigate the trends of metal line strengths with velocity separation from the QSO. We construct composites in 3 velocity bins: dv<3000 km/s, 3000<dv<6000 km/s and dv>6000 km/s, with further sub-samples to investigate the metal line dependence on N(HI) and QSO luminosity. Low (e.g. SiII and FeII) and high ionization (e.g. SiIV and CIV) species alike have equivalent widths (EWs) that are larger by factors of 1.5 -- 3 in the dv<…
We report the discovery of a "super-damped" Lyman-alpha absorber at $z_{abs}=2.2068$ toward QSO Q1135-0010 in the Sloan Digital Sky Survey, and follow-up VLT UVES spectroscopy. Voigt profile fit to the DLA line indicates log $N_{\rm H I} = 22.05 \pm 0.1$. This is the second QSO DLA discovered to date with such high $N_{\rm H I}$. We derive element abundances [Si/H] = $-1.10 \pm 0.10$, [Zn/H] = $-1.06 \pm 0.10$, [Cr/H] = $-1.55 \pm 0.10$, [Ni/H] = $-1.60 \pm 0.10$, [Fe/H] = $-1.76 \pm 0.10$, [Ti/H] = $-1.69 \pm 0.11$, [P/H] = $-0.93 \pm 0.23$, and [Cu/H] = $-0.75 \pm 0.14$. Our data indicate de…
We present deep ground based imaging of the environments of five QSOs that contain sub-Damped Lyman-alpha systems at z<1 with the SOAR telescope and SOI camera. We detect a clear surplus of galaxies in these small fields, supporting the assumption that we are detecting the galaxies responsible for the absorption systems. Assuming these galaxies are at the redshift of the absorption line systems, we detect luminous L>L* galaxies for four of the five fields within 10" of the QSO. In contrast to previous imaging surveys of DLA systems at these redshifts, which indicate a range of morphological ty…
We use cosmological N-body simulations to investigate whether measurements of the moments of large-scale structure can yield constraints on primordial non-Gaussianity. We measure the variance, skewness, and kurtosis of the evolved density field from simulations with Gaussian and three different non-Gaussian initial conditions: a local model with f_NL=100, an equilateral model with f_NL=-400, and an orthogonal model with f_NL=-400. We show that the moments of the dark matter density field differ significantly between Gaussian and non-Gaussian models. We also make the measurements on mock galaxy…
