Spatial prediction is commonly achieved under the assumption of a Gaussian random field (GRF) by obtaining maximum likelihood estimates of parameters, and then using the kriging equations to arrive at predicted values. For massive datasets, fixed rank kriging using the Expectation-Maximization (EM) algorithm for estimation has been proposed as an alternative to the usual but computationally prohibitive kriging method. The method reduces computation cost of estimation by redefining the spatial process as a linear combination of basis functions and spatial random effects. A disadvantage of this method is that it imposes constraints on the relationship between the observed locations and the knots. We develop an alternative method that utilizes the Spatial Mixed Effects (SME) model, but allows for additional flexibility by estimating the range of the spatial dependence between the observations and the knots via an Alternating Expectation Conditional Maximization (AECM) algorithm. Experiments show that our methodology improves estimation without sacrificing prediction accuracy while also minimizing the additional computational burden of extra parameter estimation. The methodology is applied to a temperature data set archived by the United States National Climate Data Center, with improved results over previous methodology.
The functional linear model is a popular tool to investigate the relationship between a scalar/functional response variable and a scalar/functional covariate. We generalize this model to a functional linear mixed-effects model when repeated measurements are available on multiple subjects. Each subject has an individual intercept and slope function, while shares common population intercept and slope function. This model is flexible in the sense of allowing the slope random effects to change with the time. We propose a penalized spline smoothing method to estimate the population and random slope…
Within a high-frequency framework, we propose a non-parametric approach to estimate a family of copulas associated to a time-changed Brownian motion. We show that our estimator is consistent and asymptotically mixed-Gaussian. Furthermore, we test its finite-sample accuracy via Monte Carlo.
In this article, we consider the problem of reconstructing networks for continuous, binary, count and discrete ordinal variables by estimating sparse precision matrix in Gaussian copula graphical models. We propose two approaches: $\ell_1$ penalized extended rank likelihood with Monte Carlo Expectation-Maximization algorithm (copula EM glasso) and copula skeptic with pair-wise copula estimation for copula Gaussian graphical models. The proposed approaches help to infer networks arising from nonnormal and mixed variables. We demonstrate the performance of our methods through simulation studies …
This paper focuses on the multivariate linear mixed-effects model, including all the correlations between the random effects when the marginal residual terms are assumed uncorrelated and homoscedastic with possibly different standard deviations. The random effects covariance matrix is Cholesky factorized to directly estimate the variance components of these random effects. This strategy enables a consistent estimate of the random effects covariance matrix which, generally, has a poor estimate when it is grossly (or directly) estimated, using the estimating methods such as the EM algorithm. By …
This paper introduces a general framework for estimating variance components in the linear mixed models via general unbiased estimating equations, which include some well-used estimators such as the restricted maximum likelihood estimator. We derive the asymptotic covariance matrices and second-order biases under general estimating equations without assuming the normality of the underlying distributions and identify a class of second-order unbiased estimators of variance components. It is also shown that the asymptotic covariance matrices and second-order biases do not depend on whether the re…
High-dimensional mixed data as a combination of both continuous and ordinal variables are widely seen in many research areas such as genomic studies and survey data analysis. Estimating the underlying correlation among mixed data is hence crucial for further inferring dependence structure. We propose a semiparametric latent Gaussian copula model for this problem. We start with estimating the association among ternary-continuous mixed data via a rank-based approach and generalize the methodology to p-level-ordinal and continuous mixed data. Concentration rate of the estimator is also provided a…
Data reproducibility is a critical issue in all scientific experiments. In this manuscript, we consider the problem of quantifying the reproducibility of graphical measurements. We generalize the concept of image intra-class correlation coefficient (I2C2) and propose the concept of the graphical intra-class correlation coefficient (GICC) for such purpose. The concept of GICC is based on multivariate probit-linear mixed effect models. We will present a Markov Chain EM (MCEM) algorithm for estimating the GICC. Simulations results with varied settings are demonstrated and our method is applied to…
Linear Mixed Effects (LME) models have been widely applied in clustered data analysis in many areas including marketing research, clinical trials, and biomedical studies. Inference can be conducted using maximum likelihood approach if assuming Normal distributions on the random effects. However, in many applications of economy, business and medicine, it is often essential to impose constraints on the regression parameters after taking their real-world interpretations into account. Therefore, in this paper we extend the classical (unconstrained) LME models to allow for sign constraints on its o…
We consider three problems in high-dimensional Gaussian linear mixed models. Without any assumptions on the design for the fixed effects, we construct an asymptotic $F$-statistic for testing whether a collection of random effects is zero, derive an asymptotic confidence interval for a single random effect at the parametric rate $\sqrt{n}$, and propose an empirical Bayes estimator for a part of the mean vector in ANOVA type models that performs asymptotically as well as the oracle Bayes estimator. We support our results with numerical simulations and provide comparisons with oracle estimators. …
Purpose: In this paper we consider the estimation of intracluster correlation for ordinal data. We focus on pure-tone audiometry hearing threshold data, where thresholds are measured in 5 decibel increments. We estimate the intracluster correlation for tests from iPhone-based hearing assessment application as a measure of test/retest reliability. Methods: We present a method to estimate the intracluster correlation using mixed effects cumulative logistic and probit models, which assume the outcome data are ordinal. This contrasts with using a mixed effects linear model which assumes that the o…
We present `latentcor`, an R package for correlation estimation from data with mixed variable types. Mixed variables types, including continuous, binary, ordinal, zero-inflated, or truncated data are routinely collected in many areas of science. Accurate estimation of correlations among such variables is often the first critical step in statistical analysis workflows. Pearson correlation as the default choice is not well suited for mixed data types as the underlying normality assumption is violated. The concept of semi-parametric latent Gaussian copula models, on the other hand, provides a uni…
We propose a versatile and computationally efficient estimating equation method for a class of hierarchical multiplicative generalized linear mixed models with additive dispersion components, based on explicit modelling of the covariance structure. The class combines longitudinal and random effects models and retains a marginal as well as a conditional interpretation. The estimation procedure combines that of generalized estimating equations for the regression with residual maximum likelihood estimation for the association parameters. This avoids the multidimensional integral of the convention…
We extend the linear mixed-effects state model to accommodate the correlated individuals and investigate its parameter and state estimation based on disturbance smoothing in this paper. For parameter estimation, EM and score based algorithms are considered. Intermediate quantity of EM algorithm is investigated firstly from which the explicit recursive formulas for the maximizer of the intermediate quantity are derived out for two given models. As for score based algorithms, explicit formulas for the score vector are achieved from which it is shown that the maximum likelihood estimation is equi…
We consider constructing model selection criteria for evaluating nonlinear mixed effects models via basis expansions. Mean functions and random functions in the mixed effects model are expressed by basis expansions, then they are estimated by the maximum likelihood method. In order to select numbers of basis we derive a Bayesian model selection criterion for evaluating nonlinear mixed effects models estimated by the maximum likelihood method. Simulation results shows the effectiveness of the mixed effects modeling.
Splunk（斯邦克）；University of Southern California（南加州大学）
Mixed linear regression (MLR) model is among the most exemplary statistical tools for modeling non-linear distributions using a mixture of linear models. When the additive noise in MLR model is Gaussian, Expectation-Maximization (EM) algorithm is a widely-used algorithm for maximum likelihood estimation of MLR parameters. However, when noise is non-Gaussian, the steps of EM algorithm may not have closed-form update rules, which makes EM algorithm impractical. In this work, we study the maximum likelihood estimation of the parameters of MLR model when the additive noise has non-Gaussian distrib…
A Mixed Model Approach for Estimating Regional Functional Connectivity from Voxel-level BOLD Signals
University of California Santa Barbara（加州大学圣塔芭芭拉分校）；Yeshiva University（叶史瓦大学）；University of California Davis（加州大学戴维斯分校）；University Grenoble Alpes, CNRS, Inria, Grenoble INP, LJK（格勒诺布尔阿尔卑斯大学、法国国家科学研究中心、法国国家数字科学研究所、格勒诺布尔理工学院）；Brigham Young University（杨百翰大学）
Model averaging with mixed criteria for estimating high quantiles of extreme values: Application to heavy rainfall
Honam Research Division, Electronics and Telecommunications Research Institute（韩国电子与电信研究院湖南研究部）；Department of Statistics, Chonnam National University（全南大学统计系）
We propose a hierarchical Bayesian model to estimate the proportional contribution of source populations to a newly founded colony. Samples are derived from the first generation offspring in the colony, but mating may occur preferentially among migrants from the same source population. Genotypes of the newly founded colony and source populations are used to estimate the mixture proportions, and the mixture proportions are related to environmental and demographic factors that might affect the colonizing process. We estimate an assortative mating coefficient, mixture proportions, and regression …
We propose a novel high-dimensional linear regression estimator: the Discrete Dantzig Selector, which minimizes the number of nonzero regression coefficients subject to a budget on the maximal absolute correlation between the features and residuals. Motivated by the significant advances in integer optimization over the past 10-15 years, we present a Mixed Integer Linear Optimization (MILO) approach to obtain certifiably optimal global solutions to this nonconvex optimization problem. The current state of algorithmics in integer optimization makes our proposal substantially more computationally…
In professional tennis, it is often acknowledged that the server has an initial advantage. Indeed, the majority of points are won by the server, making the serve one of the most important elements in this sport. In this paper, we focus on the role of the serve advantage in winning a point as a function of the rally length. We propose a Bayesian isotonic logistic regression model for the probability of winning a point on serve. In particular, we decompose the logit of the probability of winning via a linear combination of B-splines basis functions, with athlete-specific basis function coefficie…
Monitoring plant and animal populations is an important goal for both academic research and management of natural resources. Successful management of populations often depends on obtaining estimates of their mean or total over a region. The basic problem considered in this paper is the estimation of a total from a sample of plots containing count data, but the plot placements are spatially irregular and non randomized. Our application had counts from thousands of irregularly-spaced aerial photo images. We used change-of-support methods to model counts in images as a realization of an inhomogen…
For estimating area-specific parameters (quantities) in a finite population, a mixed model prediction approach is attractive. However, this approach strongly depends on the normality assumption of the response values although we often encounter a non-normal case in practice. In such a case, transforming observations to make them suitable for normality assumption is a useful tool, but the problem of selecting suitable transformation still remains open. To overcome the difficulty, we here propose a new empirical best predicting method by using a parametric family of transformations to estimate a…
Stochastic differential equations (SDEs) are increasingly used in longitudinal data analysis, compartmental models, growth modelling, and other applications in a number of disciplines. Parameter estimation, however, currently requires specialized software packages that can be difficult to use and understand. This work develops and demonstrates an approach for estimating reducible SDEs using standard nonlinear least squares or mixed-effects software. Reducible SDEs are obtained through a change of variables in linear SDEs, and are sufficiently flexible for modelling many situations. The approac…
In this paper, we consider a single-index mixed model with longitudinal data. A new set of estimating equations is proposed to estimate the single-index coefficient. The link function is estimated by using the local linear smoothing. Asymptotic normality is established for the proposed estimators. Also, the estimator of the link function achieves optimal convergence rates; and the estimators of variance components have root-$n$ consistency. These results facilitate the construction of confidence regions/intervals and hypothesis testing for the parameters of interest. Some simulations and an ap…
Estimating causal effects with propensity scores relies upon the availability of treated and untreated units observed at each value of the estimated propensity score. In settings with strong confounding, limited so-called "overlap" in propensity score distributions can undermine the empirical basis for estimating causal effects and yield erratic finite-sample performance of existing estimators. We propose a Bayesian procedure designed to estimate causal effects in settings where there is limited overlap in propensity score distributions. Our method relies on the posterior predictive treatment …
Mixed Membership Models (MMMs) are a popular family of latent structure models for complex multivariate data. Instead of forcing each subject to belong to a single cluster, MMMs incorporate a vector of subject-specific weights characterizing partial membership across clusters. With this flexibility come challenges in uniquely identifying, estimating, and interpreting the parameters. In this article, we propose a new class of Dimension-Grouped MMMs (Gro-M$^3$s) for multivariate categorical data, which improve parsimony and interpretability. In Gro-M$^3$s, observed variables are partitioned into…
In this paper, we treat estimation and prediction problems where negative multinomial variables are observed and in particular consider unbalanced settings. First, the problem of estimating multiple negative multinomial parameter vectors under the standardized squared error loss is treated and a new empirical Bayes estimator which dominates the UMVU estimator under suitable conditions is derived. Second, we consider estimation of the joint predictive density of several multinomial tables under the Kullback-Leibler divergence and obtain a sufficient condition under which the Bayesian predictive…
The mixed-logit model is a flexible tool in transportation choice analysis, which provides valuable insights into inter and intra-individual behavioural heterogeneity. However, applications of mixed-logit models are limited by the high computational and data requirements for model estimation. When estimating on small samples, the Bayesian estimation approach becomes vulnerable to over and under-fitting. This is problematic for investigating the behaviour of specific population sub-groups or market segments with low data availability. Similar challenges arise when transferring an existing model…
The joint use of counting functions, Hilbert basis and Markov basis allows to define a procedure to generate all the fractions that satisfy a given set of constraints in terms of orthogonality. The general case of mixed level designs, without restrictions on the number of levels of each factor (like primes or power of primes) is studied. This new methodology has been experimented on some significant classes of fractional factorial designs, including mixed level orthogonal arrays.
This article describes a full Bayesian treatment for simultaneous fixed-effect selection and parameter estimation in high-dimensional generalized linear mixed models. The approach consists of using a Bayesian adaptive Lasso penalty for signal-level adaptive shrinkage and a fast Variational Bayes scheme for estimating the posterior mode of the coefficients. The proposed approach offers several advantages over the existing methods, for example, the adaptive shrinkage parameters are automatically incorporated, no Laplace approximation step is required to integrate out the random effects. The perf…
Estimating Evolving Functions with Dynamic Gaussian Processes
Eindhoven University of Technology（埃因霍温理工大学）；Control Systems Technology Section, Department of Mechanical Engineering, Eindhoven University of Technology（埃因霍温理工大学机械工程系控制系统技术组）
We study variance estimation and associated confidence intervals for parameters characterizing genetic effects from genome-wide association studies (GWAS) misspecified mixed model analysis. Previous studies have shown that, in spite of the model misspecification, certain quantities of genetic interests are estimable, and consistent estimators of these quantities can be obtained using the restricted maximum likelihood (REML) method under a misspecified linear mixed model. However, the asymptotic variance of such a REML estimator is complicated and not ready to be implemented for practical use. …
