Over the last two decades, frameworks for distributed-memory parallel computation, such as MapReduce, Hadoop, Spark and Dryad, have gained significant popularity with the growing prevalence of large network datasets. The Massively Parallel Computation (MPC) model is the de-facto standard for studying graph algorithms in these frameworks theoretically. Subgraph counting is one such fundamental problem in analyzing massive graphs, with the main algorithmic challenges centering on designing methods which are both scalable and accurate.
Given a graph $G=(V, E)$ with $n$ vertices, $m$ edges and $T$ triangles, our first result is an algorithm that outputs a $(1+\varepsilon)$-approximation to $T$, with asymptotically \emph{optimal round and total space complexity} provided any $S \geq \max{(\sqrt m, n^2/m)}$ space per machine and assuming $T=Ω(\sqrt{m/n})$. Our result gives a quadratic improvement on the bound on $T$ over previous works. We also provide a simple extension of our result to counting \emph{any} subgraph of $k$ size for constant $k \geq 1$. Our second result is an $O_{\varepsilon}(\log \log n)$-round algorithm for exactly counting the number of triangles, whose total space usage is parametrized by the \emph{arboricity} $α$ of the input graph. We extend this result to exactly counting $k$-cliques for any constant $k$. Finally, we prove that a recent result of Bera, Pashanasangi and Seshadhri (ITCS 2020) for exactly counting all subgraphs of size at most $5$ can be implemented in the MPC model in total space.
The problem of counting occurrences of query graphs in a large data graph, known as subgraph counting, is fundamental to several domains such as genomics and social network analysis. Many important special cases (e.g. triangle counting) have received significant attention. Color coding is a very general and powerful algorithmic technique for subgraph counting. Color coding has been shown to be effective in several applications, but scalable implementations are only known for the special case of {\em tree queries} (i.e. queries of treewidth one). In this paper we present the first efficient dis…
Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from multiple domains. Counting subgraphs is however computationally very expensive and there has been a large body of work on efficient algorithms and strategies to make subgraph counting feasible for larger subgraphs and networks. This survey aims precisely to provide a comprehensive overview of the existing methods for subgraph counting. Our main contribution is …
We systematically investigate the complexity of counting subgraph patterns modulo fixed integers. For example, it is known that the parity of the number of $k$-matchings can be determined in polynomial time by a simple reduction to the determinant. We generalize this to an $n^{f(t,s)}$-time algorithm to compute modulo $2^t$ the number of subgraph occurrences of patterns that are $s$ vertices away from being matchings. This shows that the known polynomial-time cases of subgraph detection (Jansen and Marx, SODA 2015) carry over into the setting of counting modulo $2^t$. Complementing our algorit…
In the subgraph counting problem, we are given a input graph $G(V, E)$ and a target graph $H$; the goal is to estimate the number of occurrences of $H$ in $G$. Our focus here is on designing sublinear-time algorithms for approximately counting occurrences of $H$ in $G$ in the setting where the algorithm is given query access to $G$. This problem has been studied in several recent papers which primarily focused on specific families of graphs $H$ such as triangles, cliques, and stars. However, not much is known about approximate counting of arbitrary graphs $H$. This is in sharp contrast to the …
Counting the frequency of small subgraphs is a fundamental technique in network analysis across various domains, most notably in bioinformatics and social networks. The special case of triangle counting has received much attention. Getting results for 4-vertex or 5-vertex patterns is highly challenging, and there are few practical results known that can scale to massive sizes. We introduce an algorithmic framework that can be adopted to count any small pattern in a graph and apply this framework to compute exact counts for \emph{all} 5-vertex subgraphs. Our framework is built on cutting a patt…
This paper initializes the study of {\em range subgraph counting} and {\em range subgraph listing}, both of which are motivated by the significant demands in practice to perform graph analytics on subgraphs pertinent to only selected, as opposed to all, vertices. In the first problem, there is an undirected graph $G$ where each vertex carries a real-valued attribute. Given an interval $q$ and a pattern $Q$, a query counts the number of occurrences of $Q$ in the subgraph of $G$ induced by the vertices whose attributes fall in $q$. The second problem has the same setup except that a query needs …
We consider the problem of counting all $k$-vertex subgraphs in an input graph, for any constant $k$. This problem (denoted sub-cnt$_k$) has been studied extensively in both theory and practice. In a classic result, Chiba and Nishizeki (SICOMP 85) gave linear time algorithms for clique and 4-cycle counting for bounded degeneracy graphs. This is a rich class of sparse graphs that contains, for example, all minor-free families and preferential attachment graphs. The techniques from this result have inspired a number of recent practical algorithms for sub-cnt$_k$. Towards a better understanding o…
We present a dynamic data structure representing a graph G, which allows addition and removal of edges from G and can determine the number of appearances of a graph of a bounded size as an induced subgraph of G. The queries are answered in constant time. When the data structure is used to represent graphs from a class with bounded expansion (which includes planar graphs and more generally all proper classes closed on topological minors, as well as many other natural classes of graphs with bounded average degree), the amortized time complexity of updates is polylogarithmic.
This paper presents a comprehensive study of algorithms for maintaining the number of all connected four-vertex subgraphs in a dynamic graph. Specifically, our algorithms maintain the number of paths of length three in deterministic amortized $\mathcal{O}(m^\frac{1}{2})$ update time, and any other connected four-vertex subgraph which is not a clique in deterministic amortized update time $\mathcal{O}(m^\frac{2}{3})$. Queries can be answered in constant time. We also study the query times for subgraphs containing an arbitrary edge that is supplied only with the query as well as the case where o…
Subgraph counting is a fundamental task in network analysis. Typically, algorithmic work is on total counting, where we wish to count the total frequency of a (small) pattern subgraph in a large input data set. But many applications require local counts (also called vertex orbit counts) wherein, for every vertex $v$ of the input graph, one needs the count of the pattern subgraph involving $v$. This provides a rich set of vertex features that can be used in machine learning tasks, especially classification and clustering. But getting local counts is extremely challenging. Even the easier proble…
We present a new parallel algorithm for $k$-clique counting/listing that has polylogarithmic span (parallel time) and is work-efficient (matches the work of the best sequential algorithm) for sparse graphs. Our algorithm is based on computing low out-degree orientations, which we present new linear-work and polylogarithmic-span algorithms for computing in parallel. We also present new parallel algorithms for producing unbiased estimations of clique counts using graph sparsification. Finally, we design two new parallel work-efficient algorithms for approximating the $k$-clique densest subgraph,…
Subgraph counting is a fundamental primitive in graph processing, with applications in social network analysis (e.g., estimating the clustering coefficient of a graph), database processing and other areas. The space complexity of subgraph counting has been studied extensively in the literature, but many natural settings are still not well understood. In this paper we revisit the subgraph (and hypergraph) counting problem in the sketching model, where the algorithm's state as it processes a stream of updates to the graph is a linear function of the stream. This model has recently received a lot…
In this paper we study a natural generalization of both {\sc $k$-Path} and {\sc $k$-Tree} problems, namely, the {\sc Subgraph Isomorphism} problem. In the {\sc Subgraph Isomorphism} problem we are given two graphs $F$ and $G$ on $k$ and $n$ vertices respectively as an input, and the question is whether there exists a subgraph of $G$ isomorphic to $F$. We show that if the treewidth of $F$ is at most $t$, then there is a randomized algorithm for the {\sc Subgraph Isomorphism} problem running in time $\cO^*(2^k n^{2t})$. To do so, we associate a new multivariate {Homomorphism polynomial} of degre…
Counting instances of specific subgraphs in a larger graph is an important problem in graph mining. Finding cliques of size k (k-cliques) is one example of this NP-hard problem. Different algorithms for clique counting avoid counting the same clique multiple times by pivoting or ordering the graph. Ordering-based algorithms include an ordering step to direct the edges in the input graph, and a counting step, which is dominated by building node or edge-induced subgraphs. Of the ordering-based algorithms, kClist is the state-of-the art algorithm designed to work on sparse real-world graphs. Desp…
We present an algorithm to count the number of occurrences of a pattern graph $H$ as an induced subgraph in a host graph $G$. If $G$ belongs to a bounded expansion class, the algorithm runs in linear time. Our design choices are motivated by the need for an approach that can be engineered into a practical implementation for sparse host graphs. Specifically, we introduce a decomposition of the pattern $H$ called a counting dag $\vec C(H)$ which encodes an order-aware, inclusion-exclusion counting method for $H$. Given such a counting dag and a suitable linear ordering $\mathbb G$ of $G$ as inpu…
We prove that finding a $k$-edge induced subgraph is fixed-parameter tractable, thereby answering an open problem of Leizhen Cai. Our algorithm is based on several combinatorial observations, Gauss' famous \emph{Eureka} theorem [Andrews, 86], and a generalization of the well-known fpt-algorithm for the model-checking problem for first-order logic on graphs with locally bounded tree-width due to Frick and Grohe [Frick and Grohe, 01]. On the other hand, we show that two natural counting versions of the problem are hard. Hence, the $k$-edge induced subgraph problem is one of the rare known exampl…
We introduce graph motif parameters, a class of graph parameters that depend only on the frequencies of constant-size induced subgraphs. Classical works by Lovász show that many interesting quantities have this form, including, for fixed graphs $H$, the number of $H$-copies (induced or not) in an input graph $G$, and the number of homomorphisms from $H$ to $G$. Using the framework of graph motif parameters, we obtain faster algorithms for counting subgraph copies of fixed graphs $H$ in host graphs $G$: For graphs $H$ on $k$ edges, we show how to count subgraph copies of $H$ in time $k^{O(k)}\c…
For a class $\mathcal{H}$ of graphs, #Sub$(\mathcal{H})$ is the counting problem that, given a graph $H\in \mathcal{H}$ and an arbitrary graph $G$, asks for the number of subgraphs of $G$ isomorphic to $H$. It is known that if $\mathcal{H}$ has bounded vertex-cover number (equivalently, the size of the maximum matching in $\mathcal{H}$ is bounded), then #Sub$(\mathcal{H})$ is polynomial-time solvable. We complement this result with a corresponding lower bound: if $\mathcal{H}$ is any recursively enumerable class of graphs with unbounded vertex-cover number, then #Sub$(\mathcal{H})$ is #W[1]-ha…
We consider the problem of counting the number of copies of a fixed graph $H$ within an input graph $G$. This is one of the most well-studied algorithmic graph problems, with many theoretical and practical applications. We focus on solving this problem when the input $G$ has bounded degeneracy. This is a rich family of graphs, containing all graphs without a fixed minor (e.g. planar graphs), as well as graphs generated by various random processes (e.g. preferential attachment graphs). We say that $H$ is easy if there is a linear-time algorithm for counting the number of copies of $H$ in an inp…
We study the problems of counting the homomorphisms, counting the copies, and counting the induced copies of a $k$-vertex graph $H$ in a $d$-degenerate $n$-vertex graph $G$. Our main result establishes exhaustive and explicit complexity classifications for counting subgraphs and induced subgraphs. We show that the (not necessarily induced) copies of $H$ in $G$ can be counted in time $f(k,d)\cdot n^{\max(\mathsf{imn}(H),1)}\cdot \log n$, where $f$ is some computable function and $\mathsf{imn}(H)$ is the size of the largest induced matching of $H$. Whenever the class of allowed patterns has unbo…
Estimating the number of subgraphs in data streams is a fundamental problem that has received great attention in the past decade. In this paper, we give improved streaming algorithms for approximately counting the number of occurrences of an arbitrary subgraph $H$, denoted $\# H$, when the input graph $G$ is represented as a stream of $m$ edges. To obtain our algorithms, we provide a generic transformation that converts constant-round sublinear-time graph algorithms in the query access model to constant-pass sublinear-space graph streaming algorithms. Using this transformation, we obtain the f…
A $k$-motif (or graphlet) is a subgraph on $k$ nodes in a graph or network. Counting of motifs in complex networks has been a well-studied problem in network analysis of various real-word graphs arising from the study of social networks and bioinformatics. In particular, the triangle counting problem has received much attention due to its significance in understanding the behavior of social networks. Similarly, subgraphs with more than 3 nodes have received much attention recently. While there have been successful methods developed on this problem, most of the existing algorithms are not scala…
Vassilevska and Williams (STOC 2009) showed how to count simple paths on $k$ vertices and matchings on $k/2$ edges in an $n$-vertex graph in time $n^{k/2+O(1)}$. In the same year, two different algorithms with the same runtime were given by Koutis and Williams~(ICALP 2009), and Björklund \emph{et al.} (ESA 2009), via $n^{st/2+O(1)}$-time algorithms for counting $t$-tuples of pairwise disjoint sets drawn from a given family of $s$-sized subsets of an $n$-element universe. Shortly afterwards, Alon and Gutner (TALG 2010) showed that these problems have $Ω(n^{\lfloor st/2\rfloor})$ and $Ω(n^{\lflo…
Given a graph property $Φ$, we consider the problem $\mathtt{EdgeSub}(Φ)$, where the input is a pair of a graph $G$ and a positive integer $k$, and the task is to decide whether $G$ contains a $k$-edge subgraph that satisfies $Φ$. Specifically, we study the parameterized complexity of $\mathtt{EdgeSub}(Φ)$ and of its counting problem $\#\mathtt{EdgeSub}(Φ)$ with respect to both approximate and exact counting. We obtain a complete picture for minor-closed properties $Φ$: the decision problem $\mathtt{EdgeSub}(Φ)$ always admits an FPT algorithm and the counting problem $\#\mathtt{EdgeSub}(Φ)$ al…
We present a simple sublinear-time algorithm for sampling an arbitrary subgraph $H$ \emph{exactly uniformly} from a graph $G$ with $m$ edges, to which the algorithm has access by performing the following types of queries: (1) degree queries, (2) neighbor queries, (3) pair queries and (4) edge sampling queries. The query complexity and running time of our algorithm are $\tilde{O}(\min\{m, \frac{m^{ρ(H)}}{\# H}\})$ and $\tilde{O}(\frac{m^{ρ(H)}}{\# H})$, respectively, where $ρ(H)$ is the fractional edge-cover of $H$ and $\# H$ is the number of copies of $H$ in $G$. For any clique on $r$ vertices…
The Massively Parallel Computation (MPC) model is an emerging model which distills core aspects of distributed and parallel computation. It has been developed as a tool to solve (typically graph) problems in systems where the input is distributed over many machines with limited space. Recent work has focused on the regime in which machines have sublinear (in $n$, the number of nodes in the input graph) memory, with randomized algorithms presented for fundamental graph problems of Maximal Matching and Maximal Independent Set. However, there have been no prior corresponding \emph{deterministic} …
Let H be a graph, and let C_H(G) be the number of (subgraph isomorphic) copies of H contained in a graph G. We investigate the fundamental problem of estimating C_H(G). Previous results cover only a few specific instances of this general problem, for example, the case when H has degree at most one (monomer-dimer problem). In this paper, we present the first general subcase of the subgraph isomorphism counting problem which is almost always efficiently approximable. The results rely on a new graph decomposition technique. Informally, the decomposition is a labeling of the vertices such that eve…
The $h$-index is a metric used to measure the impact of a user in a publication setting, such as a member of a social network with many highly liked posts or a researcher in an academic domain with many highly cited publications. Specifically, the $h$-index of a user is the largest integer $h$ such that at least $h$ publications of the user have at least $h$ units of positive feedback. We design an algorithm that, given query access to the $n$ publications of a user and each publication's corresponding positive feedback number, outputs a $(1\pm \varepsilon)$-approximation of the $h$-index of t…
We show for a broad class of counting problems, correlation decay (strong spatial mixing) implies FPTAS on planar graphs. The framework for the counting problems considered by us is the Holant problems with arbitrary constant-size domain and symmetric constraint functions. We define a notion of regularity on the constraint functions, which covers a wide range of natural and important counting problems, including all multi-state spin systems, counting graph homomorphisms, counting weighted matchings or perfect matchings, the subgraphs world problem transformed from the ferromagnetic Ising model…
We study the problem of estimating the value of sums of the form $S_p \triangleq \sum \binom{x_i}{p}$ when one has the ability to sample $x_i \geq 0$ with probability proportional to its magnitude. When $p=2$, this problem is equivalent to estimating the selectivity of a self-join query in database systems when one can sample rows randomly. We also study the special case when $\{x_i\}$ is the degree sequence of a graph, which corresponds to counting the number of $p$-stars in a graph when one has the ability to sample edges randomly. Our algorithm for a $(1 \pm \varepsilon)$-multiplicative app…
The problem of counting small subgraphs, and specifically cycles, in the streaming model received a lot of attention over the past few years. In this paper, we consider arbitrary order insertion-only streams, improving over the state-of-the-art result on counting 4-cycles. Our algorithm computes a $(1+ε)$-approximation by taking three passes over the stream and using space $O(\frac{m \log n}{ε^2 T^{1/3}})$, where $m$ is the number of edges in the graph and $T$ is the number of 4-cycles.
Many of the classic graph problems cannot be solved in the Massively Parallel Computation setting (MPC) with strongly sublinear space per machine and $o(\log n)$ rounds, unless the 1-vs-2 cycles conjecture is false. This is true even on planar graphs. Such problems include, for example, counting connected components, bipartition, minimum spanning tree problem, (approximate) shortest paths, and (approximate) diameter/radius. In this paper, we show a way to get around this limitation. Specifically, we show that if we have a ``nice'' (for example, straight-line) embedding of the input graph, all …
Counting the frequency of small subgraphs is a fundamental technique in network analysis across various domains, most notably in bioinformatics and social networks. The special case of triangle counting has received much attention. Getting results for 4-vertex patterns is highly challenging, and there are few practical results known that can scale to massive sizes. Indeed, even a highly tuned enumeration code takes more than a day on a graph with millions of edges. Most previous work that runs for truly massive graphs employ clusters and massive parallelization. We provide a sampling algorithm…
We propose Graph Priority Sampling (GPS), a new paradigm for order-based reservoir sampling from massive streams of graph edges. GPS provides a general way to weight edge sampling according to auxiliary and/or size variables so as to accomplish various estimation goals of graph properties. In the context of subgraph counting, we show how edge sampling weights can be chosen so as to minimize the estimation variance of counts of specified sets of subgraphs. In distinction with many prior graph sampling schemes, GPS separates the functions of edge sampling and subgraph estimation. We propose two …
Counting perfect matchings has played a central role in the theory of counting problems. The permanent, corresponding to bipartite graphs, was shown to be #P-complete to compute exactly by Valiant (1979), and a fully polynomial randomized approximation scheme (FPRAS) was presented by Jerrum, Sinclair, and Vigoda (2004) using a Markov chain Monte Carlo (MCMC) approach. However, it has remained an open question whether there exists an FPRAS for counting perfect matchings in general graphs. In fact, it was unresolved whether the same Markov chain defined by JSV is rapidly mixing in general. In th…
In this paper we present a modification of a technique by Chiba and Nishizeki [Chiba and Nishizeki: Arboricity and Subgraph Listing Algorithms, SIAM J. Comput. 14(1), pp. 210--223 (1985)]. Based on it, we design a data structure suitable for dynamic graph algorithms. We employ the data structure to formulate new algorithms for several problems, including counting subgraphs of four vertices, recognition of diamond-free graphs, cop-win graphs and strongly chordal graphs, among others. We improve the time complexity for graphs with low arboricity or h-index.
