In Financial Signal Processing, multiple time series such as financial indicators, stock prices and exchange rates are strongly coupled due to their dependence on the latent state of the market and therefore they are required to be jointly analysed. We focus on learning the relationships among financial time series by modelling them through a multi-output Gaussian process (MOGP) with expressive covariance functions. Learning these market dependencies among financial series is crucial for the imputation and prediction of financial observations. The proposed model is validated experimentally on two real-world financial datasets for which their correlations across channels are analysed. We compare our model against other MOGPs and the independent Gaussian process on real financial data.
Imputation is a popular technique for handling item nonresponse in survey sampling. Parametric imputation is based on a parametric model for imputation and is less robust against the failure of the imputation model. Nonparametric imputation is fully robust but is not applicable when the dimension of covariates is large due to the curse of dimensionality. Semiparametric imputation is another robust imputation based on a flexible model where the number of model parameters can increase with the sample size. In this paper, we propose another semiparametric imputation based on a more flexible model…
Technical University of Denmark (DTU)（丹麦技术大学）；University of Washington（华盛顿大学）；Massachusetts Institute of Technology (MIT)（麻省理工学院）
Traffic speed data imputation is a fundamental challenge for data-driven transport analysis. In recent years, with the ubiquity of GPS-enabled devices and the widespread use of crowdsourcing alternatives for the collection of traffic data, transportation professionals increasingly look to such user-generated data for many analysis, planning, and decision support applications. However, due to the mechanics of the data collection process, crowdsourced traffic data such as probe-vehicle data is highly prone to missing observations, making accurate imputation crucial for the success of any applica…
Missing data are ubiquitous in real world applications and, if not adequately handled, may lead to the loss of information and biased findings in downstream analysis. Particularly, high-dimensional incomplete data with a moderate sample size, such as analysis of multi-omics data, present daunting challenges. Imputation is arguably the most popular method for handling missing data, though existing imputation methods have a number of limitations. Single imputation methods such as matrix completion methods do not adequately account for imputation uncertainty and hence would yield improper statist…
Item nonresponse is frequently encountered in practice. Ignoring missing data can lose efficiency and lead to misleading inference. Fractional imputation is a frequentist approach of imputation for handling missing data. However, the parametric fractional imputation of \cite{kim2011parametric} may be subject to bias under model misspecification. In this paper, we propose a novel semiparametric fractional imputation method using Gaussian mixture models. The proposed method is computationally efficient and leads to robust estimation. The proposed method is further extended to incorporate the cat…
The problem of missing values in multivariable time series is a key challenge in many applications such as clinical data mining. Although many imputation methods show their effectiveness in many applications, few of them are designed to accommodate clinical multivariable time series. In this work, we propose a multiple imputation model that capture both cross-sectional information and temporal correlations. We integrate Gaussian processes with mixture models and introduce individualized mixing weights to handle the variance of predictive confidence of Gaussian process models. The proposed mode…
This paper proposes a flexible Bayesian approach to multiple imputation using conditional Gaussian mixtures. We introduce novel shrinkage priors for covariate-dependent mixing proportions in the mixture models to automatically select the suitable number of components used in the imputation step. We develop an efficient sampling algorithm for posterior computation and multiple imputation via Markov Chain Monte Carlo methods. The proposed method can be easily extended to the situation where the data contains not only continuous variables but also discrete variables such as binary and count value…
Missing data theory deals with the statistical methods in the occurrence of missing data. Missing data occurs when some values are not stored or observed for variables of interest. However, most of the statistical theory assumes that data is fully observed. An alternative to deal with incomplete databases is to fill in the spaces corresponding to the missing information based on some criteria, this technique is called imputation. We introduce a new imputation methodology for databases with univariate missing patterns based on additional information from fully-observed auxiliary variables. We a…
Universidad Carlos III de Madrid（马德里卡洛斯三世大学）；Microsoft Research（微软研究院）；University of Cambridge（剑桥大学）
Variational Autoencoders (VAEs) have recently been highly successful at imputing and acquiring heterogeneous missing data. However, within this specific application domain, existing VAE methods are restricted by using only one layer of latent variables and strictly Gaussian posterior approximations. To address these limitations, we present HH-VAEM, a Hierarchical VAE model for mixed-type incomplete data that uses Hamiltonian Monte Carlo with automatic hyper-parameter tuning for improved approximate inference. Our experiments show that HH-VAEM outperforms existing baselines in the tasks of miss…
Biomedical Research and Innovation Institute of Cádiz (INiBICA)（加的斯生物医学研究与创新研究所（INiBICA））；Puerta del Mar University（马门大学）；Universidad Autónoma de Madrid（马德里自治大学）；Puerta del Mar University Hospital（马门大学医院）；University of Cádiz（加的斯大学）
Missing values are common in many real-life datasets. However, most of the current machine learning methods can not handle missing values. This means that they should be imputed beforehand. Gaussian Processes (GPs) are non-parametric models with accurate uncertainty estimates that combined with sparse approximations and stochastic variational inference scale to large data sets. Sparse GPs can be used to compute a predictive distribution for missing data. Here, we present a hierarchical composition of sparse GPs that is used to predict missing values at each dimension using all the variables fr…
University College London（伦敦大学学院）；University of Exeter（埃克塞特大学）
Deep Gaussian processes (DGPs) provide a rich class of models that can better represent functions with varying regimes or sharp changes, compared to conventional GPs. In this work, we propose a novel inference method for DGPs for computer model emulation. By stochastically imputing the latent layers, our approach transforms a DGP into a linked GP: a novel emulator developed for systems of linked computer models. This transformation permits an efficient DGP training procedure that only involves optimizations of conventional GPs. In addition, predictions from DGP emulators can be made in a fast …
We propose Conditional Imputation GAN, an extended missing data imputation method based on Generative Adversarial Networks (GANs). The motivating use case is learning-to-rank, the cornerstone of modern search, recommendation system, and information retrieval applications. Empirical ranking datasets do not always follow standard Gaussian distributions or Missing Completely At Random (MCAR) mechanism, which are standard assumptions of classic missing data imputation methods. Our methodology provides a simple solution that offers compatible imputation guarantees while relaxing assumptions for mis…
ETH Zürich（苏黎世联邦理工学院）；Yandex（俄罗斯搜索引擎公司）；UC Irvine（加州大学欧文分校）
Multivariate time series with missing values are common in areas such as healthcare and finance, and have grown in number and complexity over the years. This raises the question whether deep learning methodologies can outperform classical data imputation methods in this domain. However, naive applications of deep learning fall short in giving reliable confidence estimates and lack interpretability. We propose a new deep sequential latent variable model for dimensionality reduction and data imputation. Our modeling assumption is simple and interpretable: the high dimensional time series has a l…
In this paper we recast the problem of missing values in the covariates of a regression model as a latent Gaussian Markov random field (GMRF) model in a fully Bayesian framework. Our proposed approach is based on the definition of the covariate imputation sub-model as a latent effect with a GMRF structure. We show how this formulation works for continuous covariates and provide some insight on how this could be extended to categorical covariates. The resulting Bayesian hierarchical model naturally fits within the integrated nested Laplace approximation (INLA) framework, which we use for model …
ETH Zurich（苏黎世联邦理工学院）；SIB Swiss Institute of Bioinformatics（SIB瑞士生物信息学研究所）
The signature transform is a 'universal nonlinearity' on the space of continuous vector-valued paths, and has received attention for use in machine learning on time series. However, real-world temporal data is typically observed at discrete points in time, and must first be transformed into a continuous path before signature techniques can be applied. We make this step explicit by characterising it as an imputation problem, and empirically assess the impact of various imputation strategies when applying signature-based neural nets to irregular time series data. For one of these strategies, Gau…
TerraNIS；University of Toulouse（图卢兹大学）；IRIT-INP-ENSEEIHT（图卢兹国立综合理工学院-ENSEEIHT-图卢兹计算机研究所）；TéSA（航空航天电信实验室）；IRIT-UPS（图卢兹第三大学-图卢兹计算机研究所）
Missing data is a recurrent problem in remote sensing, mainly due to cloud coverage for multispectral images and acquisition problems. This can be a critical issue for crop monitoring, especially for applications relying on machine learning techniques, which generally assume that the feature matrix does not have missing values. This paper proposes a Gaussian Mixture Model (GMM) for the reconstruction of parcel-level features extracted from multispectral images. A robust version of the GMM is also investigated, since datasets can be contaminated by inaccurate samples or features (e.g., wrong cr…
Joint data imputation and mechanistic modelling for simulating heart-brain interactions in incomplete datasets
Inria（法国国家信息与自动化技术研究所）；Université Côte d’Azur（蔚蓝海岸大学）；PhySense（PhySense公司）；Department of Information and Communication Technologies（信息与通信技术系）；Universitat Pompeu Fabra（庞培法布拉大学）
Queen Mary University of London（伦敦玛丽女王大学）；University of Witwatersrand（威特沃特斯兰德大学）；University of Johannesburg（约翰内斯堡大学）；Summerland Research and Development Centre, Agriculture and Agri-Food Canada（加拿大农业与农业食品部萨默兰研发中心）
Streamflow observation data is vital for flood monitoring, agricultural, and settlement planning. However, such streamflow data are commonly plagued with missing observations due to various causes such as harsh environmental conditions and constrained operational resources. This problem is often more pervasive in under-resourced areas such as Sub-Saharan Africa. In this work, we reconstruct streamflow time series data through bias correction of the GEOGloWS ECMWF streamflow service (GESS) forecasts at ten river gauging stations in Benin Republic. We perform bias correction by fitting Quantile …
In the last five years, the financial industry has been impacted by the emergence of digitalization and machine learning. In this article, we explore two methods that have undergone rapid development in recent years: Gaussian processes and Bayesian optimization. Gaussian processes can be seen as a generalization of Gaussian random vectors and are associated with the development of kernel methods. Bayesian optimization is an approach for performing derivative-free global optimization in a small dimension, and uses Gaussian processes to locate the global maximum of a black-box function. The firs…
Financial markets are notoriously complex environments, presenting vast amounts of noisy, yet potentially informative data. We consider the problem of forecasting financial time series from a wide range of information sources using online Gaussian Processes with Automatic Relevance Determination (ARD) kernels. We measure the performance gain, quantified in terms of Normalised Root Mean Square Error (NRMSE), Median Absolute Deviation (MAD) and Pearson correlation, from fusing each of four separate data domains: time series technicals, sentiment analysis, options market data and broker recommend…
In this paper we use Gaussian Process (GP) regression to propose a novel approach for predicting volatility of financial returns by forecasting the envelopes of the time series. We provide a direct comparison of their performance to traditional approaches such as GARCH. We compare the forecasting power of three approaches: GP regression on the absolute and squared returns; regression on the envelope of the returns and the absolute returns; and regression on the envelope of the negative and positive returns separately. We use a maximum a posteriori estimate with a Gaussian prior to determine ou…
We present a computational method for measuring financial risk by estimating the Value at Risk and Expected Shortfall from financial series. We have made two assumptions: First, that the predictive distributions of the values of an asset are conditioned by information on the way in which the variable evolves from similar conditions, and secondly, that the underlying random processes can be described using piecewise Gaussian processes. The performance of the method was evaluated by using it to estimate VaR and ES for a daily data series taken from the S&P500 index and applying a backtesting pro…
The estimation of dependencies between multiple variables is a central problem in the analysis of financial time series. A common approach is to express these dependencies in terms of a copula function. Typically the copula function is assumed to be constant but this may be inaccurate when there are covariates that could have a large influence on the dependence structure of the data. To account for this, a Bayesian framework for the estimation of conditional copulas is proposed. In this framework the parameters of a copula are non-linearly related to some arbitrary conditioning variables. We e…
A diffusion-based generative model for financial time series via geometric Brownian motion
Department of Mathematics, POSTECH（POSTECH数学系）；Department of Financial Mathematics, Gachon University（高丽大学金融数学系）；Department of Applied Artificial Intelligence, SeoulTech（首尔科技大学应用人工智能系）
We introduce a Bayesian Gaussian process latent variable model that explicitly captures spatial correlations in data using a parameterized spatial kernel and leveraging structure-exploiting algebra on the model covariance matrices for computational tractability. Inference is made tractable through a collapsed variational bound with similar computational complexity to that of the traditional Bayesian GP-LVM. Inference over partially-observed test cases is achieved by optimizing a "partially-collapsed" bound. Modeling high-dimensional time series systems is enabled through use of a dynamical GP …
Center for Mathematical Modeling Universidad de Chile（智利大学数学建模中心）
We present MOGPTK, a Python package for multi-channel data modelling using Gaussian processes (GP). The aim of this toolkit is to make multi-output GP (MOGP) models accessible to researchers, data scientists, and practitioners alike. MOGPTK uses a Python front-end, relies on the GPflow suite and is built on a TensorFlow back-end, thus enabling GPU-accelerated training. The toolkit facilitates implementing the entire pipeline of GP modelling, including data loading, parameter initialization, model learning, parameter interpretation, up to data imputation and extrapolation. MOGPTK implements the…
Multiple imputation (MI) is a popular method for dealing with missing values. One main advantage of MI is to separate the imputation phase and the analysis one. However, both are related since they are based on distribution assumptions that have to be consistent. This point is well known as congeniality. In this paper, we discuss congeniality for clustering on continuous data. First, we theoretically highlight how two joint modeling (JM) MI methods (JM-GL and JM-DP) are congenial with various clustering methods. Then, we propose a new fully conditional specification (FCS) MI method with the sa…
There are various metrics for financial risk, such as value at risk (VaR), expected shortfall, expected/unexpected loss, etc. When estimating these metrics, it was very common to assume Gaussian distribution for the asset returns, which may underestimate the real risk of the market, especially during the financial crisis. In this paper, we propose a series of time-varying mixture models for risk analysis and management. These mixture models contain two components: one component with Gaussian distribution, and the other one with a fat-tailed Cauchy distribution. We allow the distribution parame…
The Gaussian graphical model is a widely used tool for learning gene regulatory networks with high-dimensional gene expression data. Most existing methods for Gaussian graphical models assume that the data are homogeneous, i.e., all samples are drawn from a single Gaussian distribution. However, for many real problems, the data are heterogeneous, which may contain some subgroups or come from different resources. This paper proposes to model the heterogeneous data using a mixture Gaussian graphical model, and apply the imputation-consistency algorithm, combining with the $ψ$-learning algorithm,…
Gaussian mixtures are commonly used for modeling heavy-tailed error distributions in robust linear regression. Combining the likelihood of a multivariate robust linear regression model with a standard improper prior distribution yields an analytically intractable posterior distribution that can be sampled using a data augmentation algorithm. When the response matrix has missing entries, there are unique challenges to the application and analysis of the convergence properties of the algorithm. Conditions for geometric ergodicity are provided when the incomplete data have a "monotone" structure.…
J.P.Morgan AI Research（摩根大通人工智能研究院）；J.P.Morgan AI Services & Innovation（摩根大通人工智能服务与创新部）
We propose a novel group of Gaussian Process based algorithms for fast approximate optimal stopping of time series with specific applications to financial markets. We show that structural properties commonly exhibited by financial time series (e.g., the tendency to mean-revert) allow the use of Gaussian and Deep Gaussian Process models that further enable us to analytically evaluate optimal stopping value functions and policies. We additionally quantify uncertainty in the value function by propagating the price model through the optimal stopping analysis. We compare and contrast our proposed m…
Sharif University of Technology（谢里夫理工大学）；Khatam University（哈塔姆大学）
Credit scoring is a rapidly expanding analytical technique used by banks and other financial institutions. Academic studies on credit scoring provide a range of classification techniques used to differentiate between good and bad borrowers. The main contribution of this paper is to introduce a new method for credit scoring based on Gaussian Mixture Models. Our algorithm classifies consumers into groups which are labeled as positive or negative. Labels are estimated according to the probability associated with each class. We apply our model with real world databases from Australia, Japan, and G…
In this work, we propose a model for estimating volatility from financial time series, extending the non-Gaussian family of space-state models with exact marginal likelihood proposed by Gamerman, Santos and Franco (2013). On the literature there are models focused on estimating financial assets risk, however, most of them rely on MCMC methods based on Metropolis algorithms, since full conditional posterior distributions are not known. We present an alternative model capable of estimating the volatility, in an automatic way, since all full conditional posterior distributions are known, and it i…
Imperial College London（帝国理工学院）；Cyprus University of Technology（塞浦路斯理工大学）
Generalized autoregressive conditional heteroscedasticity (GARCH) models have long been considered as one of the most successful families of approaches for volatility modeling in financial return series. In this paper, we propose an alternative approach based on methodologies widely used in the field of statistical machine learning. Specifically, we propose a novel nonparametric Bayesian mixture of Gaussian process regression models, each component of which models the noise variance process that contaminates the observed data as a separate latent Gaussian process driven by the observed data. T…
The accurate prediction of time-changing variances is an important task in the modeling of financial data. Standard econometric models are often limited as they assume rigid functional relationships for the variances. Moreover, function parameters are usually learned using maximum likelihood, which can lead to overfitting. To address these problems we introduce a novel model for time-changing variances using Gaussian Processes. A Gaussian Process (GP) defines a distribution over functions, which allows us to capture highly flexible functional relationships for the variances. In addition, we de…
This paper modifies a box-counting method of estimating a fractal dimension of a graph, and applies it to estimate the roughness of a sample function of a stochastic process such as a Levy process or a Gaussian process with stationary increments
Lawrence Berkeley National Laboratory（劳伦斯伯克利国家实验室）；University of California, Santa Cruz（加州大学圣克鲁兹分校）；UC Berkeley（加州大学伯克利分校）
This paper presents an efficient variational inference framework for deriving a family of structured gaussian process regression network (SGPRN) models. The key idea is to incorporate auxiliary inducing variables in latent functions and jointly treats both the distributions of the inducing variables and hyper-parameters as variational parameters. Then we propose structured variable distributions and marginalize latent variables, which enables the decomposability of a tractable variational lower bound and leads to stochastic optimization. Our inference approach is able to model data in which ou…
The Global Historical Climatology Network-Daily database contains, among other variables, daily maximum and minimum temperatures from weather stations around the globe. It is long known that climatological summary statistics based on daily temperature minima and maxima will not be accurate, if the bias due to the time at which the observations were collected is not accounted for. Despite some previous work, to our knowledge, there does not exist a satisfactory solution to this important problem. In this paper, we carefully detail the problem and develop a novel approach to address it. Our idea…
Multivariate categorical data occur in many applications of machine learning. One of the main difficulties with these vectors of categorical variables is sparsity. The number of possible observations grows exponentially with vector length, but dataset diversity might be poor in comparison. Recent models have gained significant improvement in supervised tasks with this data. These models embed observations in a continuous space to capture similarities between them. Building on these ideas we propose a Bayesian model for the unsupervised task of distribution estimation of multivariate categorica…
University of California, Santa Cruz（加州大学圣克鲁兹分校）；AppZen Inc.（AppZen公司）
Optical Character Recognition and extraction is a key tool in the automatic evaluation of documents in a financial context. However, the image data provided to automated systems can have unreliable quality, and can be inherently low-resolution or downsampled and compressed by a transmitting program. In this paper, we illustrate the efficacy of a Gaussian Process upsampling model for the purposes of improving OCR and extraction through upsampling low resolution documents.
We present a Python implementation for RS-HDMR-GPR (Random Sampling High Dimensional Model Representation Gaussian Process Regression). The method builds representations of multivariate functions with lower-dimensional terms, either as an expansion over orders of coupling or using terms of only a given dimensionality. This facilitates, in particular, recovering functional dependence from sparse data. The code also allows for imputation of missing values of the variables and for a significant pruning of the useful number of HDMR terms. The code can also be used for estimating relative importanc…
In this paper, we derive tail approximations of integrals of exponential functions of Gaussian random fields with varying mean functions and approximations of the associated point processes. This study is motivated naturally by multiple applications such as hypothesis testing for spatial models, study of the distribution of Bayesian marginal likelihood and Bayes factor, and financial applications.
Astronomical data often suffer from noise and incompleteness. We extend the common mixtures-of-Gaussians density estimation approach to account for situations with a known sample incompleteness by simultaneous imputation from the current model. The method, called GMMis, generalizes existing Expectation-Maximization techniques for truncated data to arbitrary truncation geometries and probabilistic rejection processes, as long as they can be specified and do not depend on the density itself. The method accounts for independent multivariate normal measurement errors for each of the observed sampl…
We consider a framework for determining and estimating the conditional pairwise relationships of variables when the observed samples are contaminated with measurement error in high dimensional settings. Assuming the true underlying variables follow a multivariate Gaussian distribution, if no measurement error is present, this problem is often solved by estimating the precision matrix under sparsity constraints. However, when measurement error is present, not correcting for it leads to inconsistent estimates of the precision matrix and poor identification of relationships. We propose a new Baye…
