Graph-FCN for image semantic segmentation

The Importance of Skip Connections in Biomedical Image Segmentation

In this paper, we study the influence of both long and short skip connections on Fully Convolutional Networks (FCN) for biomedical image segmentation. In standard FCNs, only long skip connections are used to skip features from the contracting path to the expanding path in order to recover spatial information lost during downsampling. We extend FCNs by adding short skip connections, that are similar to the ones introduced in residual networks, in order to build very deep FCNs (of hundreds of layers). A review of the gradient flow confirms that for a very deep FCN it is beneficial to have both l…

Semantic Segmentation with Boundary Neural Fields

The state-of-the-art in semantic segmentation is currently represented by fully convolutional networks (FCNs). However, FCNs use large receptive fields and many pooling layers, both of which cause blurring and low spatial resolution in the deep layers. As a result FCNs tend to produce segmentations that are poorly localized around object boundaries. Prior work has attempted to address this issue in post-processing steps, for example using a color-based CRF on top of the FCN predictions. However, these approaches require additional parameters and low-level features that are difficult to tune an…

STFCN: Spatio-Temporal FCN for Semantic Video Segmentation

This paper presents a novel method to involve both spatial and temporal features for semantic video segmentation. Current work on convolutional neural networks(CNNs) has shown that CNNs provide advanced spatial features supporting a very good performance of solutions for both image and video analysis, especially for the semantic segmentation task. We investigate how involving temporal features also has a good effect on segmenting video data. We propose a module based on a long short-term memory (LSTM) architecture of a recurrent neural network for interpreting the temporal characteristics of v…

Comparison of the Deep-Learning-Based Automated Segmentation Methods for the Head Sectioned Images of the Virtual Korean Human Project

This paper presents an end-to-end pixelwise fully automated segmentation of the head sectioned images of the Visible Korean Human (VKH) project based on Deep Convolutional Neural Networks (DCNNs). By converting classification networks into Fully Convolutional Networks (FCNs), a coarse prediction map, with smaller size than the original input image, can be created for segmentation purposes. To refine this map and to obtain a dense pixel-wise output, standard FCNs use deconvolution layers to upsample the coarse map. However, upsampling based on deconvolution increases the number of network param…

Fully Convolutional Neural Networks for Crowd Segmentation

In this paper, we propose a fast fully convolutional neural network (FCNN) for crowd segmentation. By replacing the fully connected layers in CNN with 1 by 1 convolution kernels, FCNN takes whole images as inputs and directly outputs segmentation maps by one pass of forward propagation. It has the property of translation invariance like patch-by-patch scanning but with much lower computation cost. Once FCNN is learned, it can process input images of any sizes without warping them to a standard size. These attractive properties make it extendable to other general image segmentation problems. Ba…

Masking Salient Object Detection, a Mask Region-based Convolutional Neural Network Analysis for Segmentation of Salient Objects

In this paper, we propose a broad comparison between Fully Convolutional Networks (FCNs) and Mask Region-based Convolutional Neural Networks (Mask-RCNNs) applied in the Salient Object Detection (SOD) context. Studies in the SOD literature usually explore architectures based in FCNs to detect salient regions and objects in visual scenes. However, besides the promising results achieved, FCNs showed issues in some challenging scenarios. Fairly recently studies in the SOD literature proposed the use of a Mask-RCNN approach to overcome such issues. However, there is no extensive comparison between …

Convolutional Random Walk Networks for Semantic Image Segmentation

Most current semantic segmentation methods rely on fully convolutional networks (FCNs). However, their use of large receptive fields and many pooling layers cause low spatial resolution inside the deep layers. This leads to predictions with poor localization around the boundaries. Prior work has attempted to address this issue by post-processing predictions with CRFs or MRFs. But such models often fail to capture semantic relationships between objects, which causes spatially disjoint predictions. To overcome these problems, recent methods integrated CRFs or MRFs into an FCN framework. The down…

Improving Fully Convolution Network for Semantic Segmentation

Fully Convolution Networks (FCN) have achieved great success in dense prediction tasks including semantic segmentation. In this paper, we start from discussing FCN by understanding its architecture limitations in building a strong segmentation network. Next, we present our Improved Fully Convolution Network (IFCN). In contrast to FCN, IFCN introduces a context network that progressively expands the receptive fields of feature maps. In addition, dense skip connections are added so that the context network can be effectively optimized. More importantly, these dense skip connections enable IFCN t…

Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation

Semantic segmentation is an important preliminary step towards automatic medical image interpretation. Recently deep convolutional neural networks have become the first choice for the task of pixel-wise class prediction. While incorporating prior knowledge about the structure of target objects has proven effective in traditional energy-based segmentation approaches, there has not been a clear way for encoding prior knowledge into deep learning frameworks. In this work, we propose a new loss term that encodes the star shape prior into the loss function of an end-to-end trainable fully convoluti…

FCN+：全局感受野卷积让FCN重焕生机

FCN+: Global Receptive Convolution Makes FCN Great Again

针对FCN感受野有限导致全局上下文捕捉不足的问题，提出无额外参数的全局感受野卷积（GRC），通过分组偏移采样融合全局与位置信息，改进得到FCN+，在三大数据集上性能媲美最先进方法。

An application of cascaded 3D fully convolutional networks for medical image segmentation

Recent advances in 3D fully convolutional networks (FCN) have made it feasible to produce dense voxel-wise predictions of volumetric images. In this work, we show that a multi-class 3D FCN trained on manually labeled CT scans of several anatomical structures (ranging from the large organs to thin vessels) can achieve competitive segmentation results, while avoiding the need for handcrafting features or training class-specific models. To this end, we propose a two-stage, coarse-to-fine approach that will first use a 3D FCN to roughly define a candidate region, which will then be used as input t…

BiSeg: Simultaneous Instance Segmentation and Semantic Segmentation with Fully Convolutional Networks

We present a simple and effective framework for simultaneous semantic segmentation and instance segmentation with Fully Convolutional Networks (FCNs). The method, called BiSeg, predicts instance segmentation as a posterior in Bayesian inference, where semantic segmentation is used as a prior. We extend the idea of position-sensitive score maps used in recent methods to a fusion of multiple score maps at different scales and partition modes, and adopt it as a robust likelihood for instance segmentation inference. As both Bayesian inference and map fusion are performed per pixel, BiSeg is a full…

Adaptive feature recombination and recalibration for semantic segmentation: application to brain tumor segmentation in MRI

Convolutional neural networks (CNNs) have been successfully used for brain tumor segmentation, specifically, fully convolutional networks (FCNs). FCNs can segment a set of voxels at once, having a direct spatial correspondence between units in feature maps (FMs) at a given location and the corresponding classified voxels. In convolutional layers, FMs are merged to create new FMs, so, channel combination is crucial. However, not all FMs have the same relevance for a given class. Recently, in classification problems, Squeeze-and-Excitation (SE) blocks have been proposed to re-calibrate FMs as a …

Critical Assessment of Transfer Learning for Medical Image Segmentation with Fully Convolutional Neural Networks

Transfer learning is widely used for training machine learning models. Here, we study the role of transfer learning for training fully convolutional networks (FCNs) for medical image segmentation. Our experiments show that although transfer learning reduces the training time on the target task, the improvement in segmentation accuracy is highly task/data-dependent. Larger improvements in accuracy are observed when the segmentation task is more challenging and the target training data is smaller. We observe that convolutional filters of an FCN change little during training for medical image seg…

Weakly Supervised Object Localization on grocery shelves using simple FCN and Synthetic Dataset

We propose a weakly supervised method using two algorithms to predict object bounding boxes given only an image classification dataset. First algorithm is a simple Fully Convolutional Network (FCN) trained to classify object instances. We use the property of FCN to return a mask for images larger than training images to get a primary output segmentation mask during test time by passing an image pyramid to it. We enhance the FCN output mask into final output bounding boxes by a Convolutional Encoder-Decoder (ConvAE) viz. the second algorithm. ConvAE is trained to localize objects on an artifici…

Fully Convolutional Instance-aware Semantic Segmentation

We present the first fully convolutional end-to-end solution for instance-aware semantic segmentation task. It inherits all the merits of FCNs for semantic segmentation and instance mask proposal. It performs instance mask prediction and classification jointly. The underlying convolutional representation is fully shared between the two sub-tasks, as well as between all regions of interest. The proposed network is highly integrated and achieves state-of-the-art performance in both accuracy and efficiency. It wins the COCO 2016 segmentation competition by a large margin. Code would be released a…

Self-Adaptive 2D-3D Ensemble of Fully Convolutional Networks for Medical Image Segmentation

Segmentation is a critical step in medical image analysis. Fully Convolutional Networks (FCNs) have emerged as powerful segmentation models achieving state-of-the-art results in various medical image datasets. Network architectures are usually designed manually for a specific segmentation task so applying them to other medical datasets requires extensive experience and time. Moreover, the segmentation requires handling large volumetric data that results in big and complex architectures. Recently, methods that automatically design neural networks for medical image segmentation have been present…

Multi-class Semantic Segmentation of Skin Lesions via Fully Convolutional Networks

Melanoma is clinically difficult to distinguish from common benign skin lesions, particularly melanocytic naevus and seborrhoeic keratosis. The dermoscopic appearance of these lesions has huge intra-class variations and high inter-class visual similarities. Most current research is focusing on single-class segmentation irrespective of classes of skin lesions. In this work, we evaluate the performance of deep learning on multi-class segmentation of ISIC-2017 challenge dataset, which consists of 2,750 dermoscopic images. We propose an end-to-end solution using fully convolutional networks (FCNs)…

Multi-Resolution Networks for Semantic Segmentation in Whole Slide Images

Digital pathology provides an excellent opportunity for applying fully convolutional networks (FCNs) to tasks, such as semantic segmentation of whole slide images (WSIs). However, standard FCNs face challenges with respect to multi-resolution, inherited from the pyramid arrangement of WSIs. As a result, networks specifically designed to learn and aggregate information at different levels are desired. In this paper, we propose two novel multi-resolution networks based on the popular `U-Net' architecture, which are evaluated on a benchmark dataset for binary semantic segmentation in WSIs. The pr…

Gaussian Filter in CRF Based Semantic Segmentation

Artificial intelligence is making great changes in academy and industry with the fast development of deep learning, which is a branch of machine learning and statistical learning. Fully convolutional network [1] is the standard model for semantic segmentation. Conditional random fields coded as CNN [2] or RNN [3] and connected with FCN has been successfully applied in object detection [4]. In this paper, we introduce a multi-resolution neural network for FCN and apply Gaussian filter to the extended CRF kernel neighborhood and the label image to reduce the oscillating effect of CRF neural netw…

Organ Segmentation From Full-size CT Images Using Memory-Efficient FCN

In this work, we present a memory-efficient fully convolutional network (FCN) incorporated with several memory-optimized techniques to reduce the run-time GPU memory demand during training phase. In medical image segmentation tasks, subvolume cropping has become a common preprocessing. Subvolumes (or small patch volumes) were cropped to reduce GPU memory demand. However, small patch volumes capture less spatial context that leads to lower accuracy. As a pilot study, the purpose of this work is to propose a memory-efficient FCN which enables us to train the model on full size CT image directly …

Weakly-Supervised Semantic Segmentation using Motion Cues

Fully convolutional neural networks (FCNNs) trained on a large number of images with strong pixel-level annotations have become the new state of the art for the semantic segmentation task. While there have been recent attempts to learn FCNNs from image-level weak annotations, they need additional constraints, such as the size of an object, to obtain reasonable performance. To address this issue, we present motion-CNN (M-CNN), a novel FCNN framework which incorporates motion cues and is learned from video-level weak annotations. Our learning scheme to train the network uses motion segments as s…

Confidence Calibration and Predictive Uncertainty Estimation for Deep Medical Image Segmentation

Fully convolutional neural networks (FCNs), and in particular U-Nets, have achieved state-of-the-art results in semantic segmentation for numerous medical imaging applications. Moreover, batch normalization and Dice loss have been used successfully to stabilize and accelerate training. However, these networks are poorly calibrated i.e. they tend to produce overconfident predictions both in correct and erroneous classifications, making them unreliable and hard to interpret. In this paper, we study predictive uncertainty estimation in FCNs for medical image segmentation. We make the following co…

One-Shot Learning for Semantic Segmentation

Low-shot learning methods for image classification support learning from sparse data. We extend these techniques to support dense semantic image segmentation. Specifically, we train a network that, given a small set of annotated images, produces parameters for a Fully Convolutional Network (FCN). We use this FCN to perform dense pixel-level prediction on a test image for the new semantic class. Our architecture shows a 25% relative meanIoU improvement compared to the best baseline methods for one-shot segmentation on unseen classes in the PASCAL VOC 2012 dataset and is at least 3 times faster.

II-FCN for skin lesion analysis towards melanoma detection

Dermoscopy image detection stays a tough task due to the weak distinguishable property of the object.Although the deep convolution neural network signifigantly boosted the performance on prevelance computer vision tasks in recent years,there remains a room to explore more robust and precise models to the problem of low contrast image segmentation.Towards the challenge of Lesion Segmentation in ISBI 2017,we built a symmetrical identity inception fully convolution network which is based on only 10 reversible inception blocks,every block composed of four convolution branches with combination of d…

Brain Tumor Segmentation Based on Refined Fully Convolutional Neural Networks with A Hierarchical Dice Loss

As a basic task in computer vision, semantic segmentation can provide fundamental information for object detection and instance segmentation to help the artificial intelligence better understand real world. Since the proposal of fully convolutional neural network (FCNN), it has been widely used in semantic segmentation because of its high accuracy of pixel-wise classification as well as high precision of localization. In this paper, we apply several famous FCNN to brain tumor segmentation, making comparisons and adjusting network architectures to achieve better performance measured by metrics …

Fully Convolutional Networks for Panoptic Segmentation with Point-based Supervision

In this paper, we present a conceptually simple, strong, and efficient framework for fully- and weakly-supervised panoptic segmentation, called Panoptic FCN. Our approach aims to represent and predict foreground things and background stuff in a unified fully convolutional pipeline, which can be optimized with point-based fully or weak supervision. In particular, Panoptic FCN encodes each object instance or stuff category with the proposed kernel generator and produces the prediction by convolving the high-resolution feature directly. With this approach, instance-aware and semantically consiste…

Joint Multi-Person Pose Estimation and Semantic Part Segmentation

Human pose estimation and semantic part segmentation are two complementary tasks in computer vision. In this paper, we propose to solve the two tasks jointly for natural multi-person images, in which the estimated pose provides object-level shape prior to regularize part segments while the part-level segments constrain the variation of pose locations. Specifically, we first train two fully convolutional neural networks (FCNs), namely Pose FCN and Part FCN, to provide initial estimation of pose joint potential and semantic part potential. Then, to refine pose joint location, the two types of po…

LULC Segmentation of RGB Satellite Image Using FCN-8

This work presents use of Fully Convolutional Network (FCN-8) for semantic segmentation of high-resolution RGB earth surface satel-lite images into land use land cover (LULC) categories. Specically, we propose a non-overlapping grid-based approach to train a Fully Convo-lutional Network (FCN-8) with vgg-16 weights to segment satellite im-ages into four (forest, built-up, farmland and water) classes. The FCN-8 semantically projects the discriminating features in lower resolution learned by the encoder onto the pixel space in higher resolution to get a dense classi cation. We experimented the pr…

Combining the Best of Convolutional Layers and Recurrent Layers: A Hybrid Network for Semantic Segmentation

State-of-the-art results of semantic segmentation are established by Fully Convolutional neural Networks (FCNs). FCNs rely on cascaded convolutional and pooling layers to gradually enlarge the receptive fields of neurons, resulting in an indirect way of modeling the distant contextual dependence. In this work, we advocate the use of spatially recurrent layers (i.e. ReNet layers) which directly capture global contexts and lead to improved feature representations. We demonstrate the effectiveness of ReNet layers by building a Naive deep ReNet (N-ReNet), which achieves competitive performance on …

Face Mask Extraction in Video Sequence

Inspired by the recent development of deep network-based methods in semantic image segmentation, we introduce an end-to-end trainable model for face mask extraction in video sequence. Comparing to landmark-based sparse face shape representation, our method can produce the segmentation masks of individual facial components, which can better reflect their detailed shape variations. By integrating Convolutional LSTM (ConvLSTM) algorithm with Fully Convolutional Networks (FCN), our new ConvLSTM-FCN model works on a per-sequence basis and takes advantage of the temporal correlation in video clips. …

Deep Multiphase Level Set for Scene Parsing

Recently, Fully Convolutional Network (FCN) seems to be the go-to architecture for image segmentation, including semantic scene parsing. However, it is difficult for a generic FCN to discriminate pixels around the object boundaries, thus FCN based methods may output parsing results with inaccurate boundaries. Meanwhile, level set based active contours are superior to the boundary estimation due to the sub-pixel accuracy that they achieve. However, they are quite sensitive to initial settings. To address these limitations, in this paper we propose a novel Deep Multiphase Level Set (DMLS) method…

Deep Smoke Segmentation

Inspired by the recent success of fully convolutional networks (FCN) in semantic segmentation, we propose a deep smoke segmentation network to infer high quality segmentation masks from blurry smoke images. To overcome large variations in texture, color and shape of smoke appearance, we divide the proposed network into a coarse path and a fine path. The first path is an encoder-decoder FCN with skip structures, which extracts global context information of smoke and accordingly generates a coarse segmentation mask. To retain fine spatial details of smoke, the second path is also designed as an …

Unified Multi-scale Feature Abstraction for Medical Image Segmentation

Automatic medical image segmentation, an essential component of medical image analysis, plays an importantrole in computer-aided diagnosis. For example, locating and segmenting the liver can be very helpful in livercancer diagnosis and treatment. The state-of-the-art models in medical image segmentation are variants ofthe encoder-decoder architecture such as fully convolutional network (FCN) and U-Net.1A major focus ofthe FCN based segmentation methods has been on network structure engineering by incorporating the latestCNN structures such as ResNet2and DenseNet.3In addition to exploring new n…

Fully Convolutional Multi-scale Residual DenseNets for Cardiac Segmentation and Automated Cardiac Diagnosis using Ensemble of Classifiers

Deep fully convolutional neural network (FCN) based architectures have shown great potential in medical image segmentation. However, such architectures usually have millions of parameters and inadequate number of training samples leading to over-fitting and poor generalization. In this paper, we present a novel highly parameter and memory efficient FCN based architecture for medical image analysis. We propose a novel up-sampling path which incorporates long skip and short-cut connections to overcome the feature map explosion in FCN like architectures. In order to processes the input images at …

Evidential fully convolutional network for semantic segmentation

We propose a hybrid architecture composed of a fully convolutional network (FCN) and a Dempster-Shafer layer for image semantic segmentation. In the so-called evidential FCN (E-FCN), an encoder-decoder architecture first extracts pixel-wise feature maps from an input image. A Dempster-Shafer layer then computes mass functions at each pixel location based on distances to prototypes. Finally, a utility layer performs semantic segmentation from mass functions and allows for imprecise classification of ambiguous pixels and outliers. We propose an end-to-end learning strategy for jointly updating t…

Investigations on the inference optimization techniques and their impact on multiple hardware platforms for Semantic Segmentation

In this work, the task of pixel-wise semantic segmentation in the context of self-driving with a goal to reduce the inference time is explored. Fully Convolutional Network (FCN-8s, FCN-16s, and FCN-32s) with a VGG16 encoder architecture and skip connections is trained and validated on the Cityscapes dataset. Numerical investigations are carried out for several inference optimization techniques built into TensorFlow and TensorRT to quantify their impact on the inference time and network size. Finally, the trained network is ported on to an embedded platform (Nvidia Jetson TX1) and the inference…

Deep Variational Instance Segmentation

Instance Segmentation, which seeks to obtain both class and instance labels for each pixel in the input image, is a challenging task in computer vision. State-of-the-art algorithms often employ two separate stages, the first one generating object proposals and the second one recognizing and refining the boundaries. Further, proposals are usually based on detectors such as faster R-CNN which search for boxes in the entire image exhaustively. In this paper, we propose a novel algorithm that directly utilizes a fully convolutional network (FCN) to predict instance labels. Specifically, we propose…

Quantization of Fully Convolutional Networks for Accurate Biomedical Image Segmentation

With pervasive applications of medical imaging in health-care, biomedical image segmentation plays a central role in quantitative analysis, clinical diagno- sis, and medical intervention. Since manual anno- tation su ers limited reproducibility, arduous e orts, and excessive time, automatic segmentation is desired to process increasingly larger scale histopathological data. Recently, deep neural networks (DNNs), par- ticularly fully convolutional networks (FCNs), have been widely applied to biomedical image segmenta- tion, attaining much improved performance. At the same time, quantization of …

A Novel Transformer Based Semantic Segmentation Scheme for Fine-Resolution Remote Sensing Images

The fully convolutional network (FCN) with an encoder-decoder architecture has been the standard paradigm for semantic segmentation. The encoder-decoder architecture utilizes an encoder to capture multilevel feature maps, which are incorporated into the final prediction by a decoder. As the context is crucial for precise segmentation, tremendous effort has been made to extract such information in an intelligent fashion, including employing dilated/atrous convolutions or inserting attention modules. However, these endeavors are all based on the FCN architecture with ResNet or other backbones, w…

Complex Relations in a Deep Structured Prediction Model for Fine Image Segmentation

Many deep learning architectures for semantic segmentation involve a Fully Convolutional Neural Network (FCN) followed by a Conditional Random Field (CRF) to carry out inference over an image. These models typically involve unary potentials based on local appearance features computed by FCNs, and binary potentials based on the displacement between pixels. We show that while current methods succeed in segmenting whole objects, they perform poorly in situations involving a large number of object parts. We therefore suggest incorporating into the inference algorithm additional higher-order potent…

Multimodal Transfer Learning-based Approaches for Retinal Vascular Segmentation

In ophthalmology, the study of the retinal microcirculation is a key issue in the analysis of many ocular and systemic diseases, like hypertension or diabetes. This motivates the research on improving the retinal vasculature segmentation. Nowadays, Fully Convolutional Neural Networks (FCNs) usually represent the most successful approach to image segmentation. However, the success of these models is conditioned by an adequate selection and adaptation of the architectures and techniques used, as well as the availability of a large amount of annotated data. These two issues become specially relev…

Fully Convolutional Networks for Panoptic Segmentation

In this paper, we present a conceptually simple, strong, and efficient framework for panoptic segmentation, called Panoptic FCN. Our approach aims to represent and predict foreground things and background stuff in a unified fully convolutional pipeline. In particular, Panoptic FCN encodes each object instance or stuff category into a specific kernel weight with the proposed kernel generator and produces the prediction by convolving the high-resolution feature directly. With this approach, instance-aware and semantically consistent properties for things and stuff can be respectively satisfied i…

FCNs in the Wild: Pixel-level Adversarial and Constraint-based Adaptation

Fully convolutional models for dense prediction have proven successful for a wide range of visual tasks. Such models perform well in a supervised setting, but performance can be surprisingly poor under domain shifts that appear mild to a human observer. For example, training on one city and testing on another in a different geographic region and/or weather condition may result in significantly degraded performance due to pixel-level distribution shift. In this paper, we introduce the first domain adaptive semantic segmentation method, proposing an unsupervised adversarial approach to pixel pre…

Semi-Supervised Deep Learning for Fully Convolutional Networks

Deep learning usually requires large amounts of labeled training data, but annotating data is costly and tedious. The framework of semi-supervised learning provides the means to use both labeled data and arbitrary amounts of unlabeled data for training. Recently, semi-supervised deep learning has been intensively studied for standard CNN architectures. However, Fully Convolutional Networks (FCNs) set the state-of-the-art for many image segmentation tasks. To the best of our knowledge, there is no existing semi-supervised learning method for such FCNs yet. We lift the concept of auxiliary manif…

A multi-scale pyramid of 3D fully convolutional networks for abdominal multi-organ segmentation

Recent advances in deep learning, like 3D fully convolutional networks (FCNs), have improved the state-of-the-art in dense semantic segmentation of medical images. However, most network architectures require severely downsampling or cropping the images to meet the memory limitations of today's GPU cards while still considering enough context in the images for accurate segmentation. In this work, we propose a novel approach that utilizes auto-context to perform semantic segmentation at higher resolutions in a multi-scale pyramid of stacked 3D FCNs. We train and validate our models on a dataset …

FCN-Transformer Feature Fusion for Polyp Segmentation

Colonoscopy is widely recognised as the gold standard procedure for the early detection of colorectal cancer (CRC). Segmentation is valuable for two significant clinical applications, namely lesion detection and classification, providing means to improve accuracy and robustness. The manual segmentation of polyps in colonoscopy images is time-consuming. As a result, the use of deep learning (DL) for automation of polyp segmentation has become important. However, DL-based solutions can be vulnerable to overfitting and the resulting inability to generalise to images captured by different colonosc…

AttenScribble：面向涂鸦监督医学图像分割的注意力相似性学习

AttenScribble: Attentive Similarity Learning for Scribble-Supervised Medical Image Segmentation

针对涂鸦监督医学图像分割缺乏形状与边界信息的问题，本文提出可插拔空间自注意力模块及注意力相似性损失，并结合部分分割损失与掩码CRF进行端到端训练，在ACDC和CHAOS上达到接近全监督性能。

UI-Net: Interactive Artificial Neural Networks for Iterative Image Segmentation Based on a User Model

For complex segmentation tasks, fully automatic systems are inherently limited in their achievable accuracy for extracting relevant objects. Especially in cases where only few data sets need to be processed for a highly accurate result, semi-automatic segmentation techniques exhibit a clear benefit for the user. One area of application is medical image processing during an intervention for a single patient. We propose a learning-based cooperative segmentation approach which includes the computing entity as well as the user into the task. Our system builds upon a state-of-the-art fully convolut…

Instance-sensitive Fully Convolutional Networks

Fully convolutional networks (FCNs) have been proven very successful for semantic segmentation, but the FCN outputs are unaware of object instances. In this paper, we develop FCNs that are capable of proposing instance-level segment candidates. In contrast to the previous FCN that generates one score map, our FCN is designed to compute a small set of instance-sensitive score maps, each of which is the outcome of a pixel-wise classifier of a relative position to instances. On top of these instance-sensitive score maps, a simple assembling module is able to output instance candidate at each posi…

Rethinking Semantic Segmentation from a Sequence-to-Sequence Perspective with Transformers

Most recent semantic segmentation methods adopt a fully-convolutional network (FCN) with an encoder-decoder architecture. The encoder progressively reduces the spatial resolution and learns more abstract/semantic visual concepts with larger receptive fields. Since context modeling is critical for segmentation, the latest efforts have been focused on increasing the receptive field, through either dilated/atrous convolutions or inserting attention modules. However, the encoder-decoder based FCN architecture remains unchanged. In this paper, we aim to provide an alternative perspective by treatin…

H-DenseUNet: Hybrid Densely Connected UNet for Liver and Tumor Segmentation from CT Volumes

Liver cancer is one of the leading causes of cancer death. To assist doctors in hepatocellular carcinoma diagnosis and treatment planning, an accurate and automatic liver and tumor segmentation method is highly demanded in the clinical practice. Recently, fully convolutional neural networks (FCNs), including 2D and 3D FCNs, serve as the back-bone in many volumetric image segmentation. However, 2D convolutions can not fully leverage the spatial information along the third dimension while 3D convolutions suffer from high computational cost and GPU memory consumption. To address these issues, we …

ClamNet: Using contrastive learning with variable depth Unets for medical image segmentation

Unets have become the standard method for semantic segmentation of medical images, along with fully convolutional networks (FCN). Unet++ was introduced as a variant of Unet, in order to solve some of the problems facing Unet and FCNs. Unet++ provided networks with an ensemble of variable depth Unets, hence eliminating the need for professionals estimating the best suitable depth for a task. While Unet and all its variants, including Unet++ aimed at providing networks that were able to train well without requiring large quantities of annotated data, none of them attempted to eliminate the need …

CS-R-FCN: Cross-supervised Learning for Large-Scale Object Detection

Generic object detection is one of the most fundamental problems in computer vision, yet it is difficult to provide all the bounding-box-level annotations aiming at large-scale object detection for thousands of categories. In this paper, we present a novel cross-supervised learning pipeline for large-scale object detection, denoted as CS-R-FCN. First, we propose to utilize the data flow of image-level annotated images in the fully-supervised two-stage object detection framework, leading to cross-supervised learning combining bounding-box-level annotated data and image-level annotated data. Sec…