Chemical-disease relation (CDR) extraction is significantly important to various areas of biomedical research and health care. Nowadays, many large-scale biomedical knowledge bases (KBs) containing triples about entity pairs and their relations have been built. KBs are important resources for biomedical relation extraction. However, previous research pays little attention to prior knowledge. In addition, the dependency tree contains important syntactic and semantic information, which helps to improve relation extraction. So how to effectively use it is also worth studying. In this paper, we propose a novel convolutional attention network (CAN) for CDR extraction. Firstly, we extract the shortest dependency path (SDP) between chemical and disease pairs in a sentence, which includes a sequence of words, dependency directions, and dependency relation tags. Then the convolution operations are performed on the SDP to produce deep semantic dependency features. After that, an attention mechanism is employed to learn the importance/weight of each semantic dependency vector related to knowledge representations learned from KBs. Finally, in order to combine dependency information and prior knowledge, the concatenation of weighted semantic dependency representations and knowledge representations is fed to the softmax layer for classification. Experiments on the BioCreative V CDR dataset show that our method achieves comparable performance with the state-of-the-art systems, and both dependency information and prior knowledge play important roles in CDR extraction task.
Relation Extraction (RE) is one of the fundamental tasks in Information Extraction and Natural Language Processing. Dependency trees have been shown to be a very useful source of information for this task. The current deep learning models for relation extraction has mainly exploited this dependency information by guiding their computation along the structures of the dependency trees. One potential problem with this approach is it might prevent the models from capturing important context information beyond syntactic structures and cause the poor cross-domain generalization. This paper introduce…
University of Chinese Academy of Sciences（中国科学院大学）；Institute of Software Chinese Academy of Sciences（中国科学院软件研究所）；University Of Electronic Science And Technology Of China（电子科技大学）
Medical Relation Extraction (MRE) task aims to extract relations between entities in medical texts. Traditional relation extraction methods achieve impressive success by exploring the syntactic information, e.g., dependency tree. However, the quality of the 1-best dependency tree for medical texts produced by an out-of-domain parser is relatively limited so that the performance of medical relation extraction method may degenerate. To this end, we propose a method to jointly model semantic and syntactic information from medical texts based on causal explanation theory. We generate dependency fo…
Dependency trees help relation extraction models capture long-range relations between words. However, existing dependency-based models either neglect crucial information (e.g., negation) by pruning the dependency trees too aggressively, or are computationally inefficient because it is difficult to parallelize over different tree structures. We propose an extension of graph convolutional networks that is tailored for relation extraction, which pools information over arbitrary dependency structures efficiently in parallel. To incorporate relevant information while maximally removing irrelevant c…
This article presents the SIRIUS-LTG-UiO system for the SemEval 2018 Task 7 on Semantic Relation Extraction and Classification in Scientific Papers. First we extract the shortest dependency path (sdp) between two entities, then we introduce a convolutional neural network (CNN) which takes the shortest dependency path embeddings as input and performs relation classification with differing objectives for each subtask of the shared task. This approach achieved overall F1 scores of 76.7 and 83.2 for relation classification on clean and noisy data, respectively. Furthermore, for combined relation e…
Background: Given the importance of relation or event extraction from biomedical research publications to support knowledge capture and synthesis, and the strong dependency of approaches to this information extraction task on syntactic information, it is valuable to understand which approaches to syntactic processing of biomedical text have the highest performance. Results: We perform an empirical study comparing state-of-the-art traditional feature-based and neural network-based models for two core natural language processing tasks of part-of-speech (POS) tagging and dependency parsing on two…
University of Rochester（罗切斯特大学）；Tencent AI Lab（腾讯人工智能实验室）；Institute of Advanced Technology, Westlake Institute for Advanced Study（西湖高等研究院先进技术研究院）；IBM T.J. Watson Research（IBM托马斯·J·沃森研究中心）；Amazon AWS（亚马逊云科技）；Xiamen University（厦门大学）
Medical relation extraction discovers relations between entity mentions in text, such as research articles. For this task, dependency syntax has been recognized as a crucial source of features. Yet in the medical domain, 1-best parse trees suffer from relatively low accuracies, diminishing their usefulness. We investigate a method to alleviate this problem by utilizing dependency forests. Forests contain many possible decisions and therefore have higher recall but more noise compared with 1-best outputs. A graph neural network is used to represent the forests, automatically distinguishing the …
Indian Institute of Technology Patna（印度理工学院巴特那分校）；ezDI, INC（ezDI公司）
Owing to the exponential rise in the electronic medical records, information extraction in this domain is becoming an important area of research in recent years. Relation extraction between the medical concepts such as medical problem, treatment, and test etc. is also one of the most important tasks in this area. In this paper, we present an efficient relation extraction system based on the shortest dependency path (SDP) generated from the dependency parsed tree of the sentence. Instead of relying on many handcrafted features and the whole sequence of tokens present in a sentence, our system r…
School of Computing and Information Systems（计算与信息系统学院）；The University of Melbourne（墨尔本大学）
We investigate the incorporation of character-based word representations into a standard CNN-based relation extraction model. We experiment with two common neural architectures, CNN and LSTM, to learn word vector representations from character embeddings. Through a task on the BioCreative-V CDR corpus, extracting relationships between chemicals and diseases, we show that models exploiting the character-based word representations improve on models that do not use this information, obtaining state-of-the-art result relative to previous neural approaches.
School of Computer Science and Technology, Dalian University of Technology（大连理工大学计算机科学与技术学院）；School of Foreign Languages, Dalian University of Technology（大连理工大学外国语学院）；School of Mathematical Sciences, Dalian University of Technology（大连理工大学数学科学学院）
Background: Automatic extraction of chemical-disease relations (CDR) from unstructured text is of essential importance for disease treatment and drug development. Meanwhile, biomedical experts have built many highly-structured knowledge bases (KBs), which contain prior knowledge about chemicals and diseases. Prior knowledge provides strong support for CDR extraction. How to make full use of it is worth studying. Results: This paper proposes a novel model called "Knowledge-guided Convolutional Networks (KCN)" to leverage prior knowledge for CDR extraction. The proposed model first learns knowle…
Singapore University of Technology and Design（新加坡科技设计大学）
Named entity recognition (NER), which focuses on the extraction of semantically meaningful named entities and their semantic classes from text, serves as an indispensable component for several down-stream natural language processing (NLP) tasks such as relation extraction and event extraction. Dependency trees, on the other hand, also convey crucial semantic-level information. It has been shown previously that such information can be used to improve the performance of NER (Sasano and Kurohashi 2008, Ling and Weld 2012). In this work, we investigate on how to better utilize the structured infor…
School of Computer Science and Technology at Dalian University of Technology（大连理工大学计算机科学与技术学院）
Automatically extracting the relationships between chemicals and diseases is significantly important to various areas of biomedical research and health care. Biomedical experts have built many large-scale knowledge bases (KBs) to advance the development of biomedical research. KBs contain huge amounts of structured information about entities and relationships, therefore plays a pivotal role in chemical-disease relation (CDR) extraction. However, previous researches pay less attention to the prior knowledge existing in KBs. This paper proposes a neural network-based attention model (NAM) for CD…
Previous works on key information extraction from visually rich documents (VRDs) mainly focus on labeling the text within each bounding box (i.e., semantic entity), while the relations in-between are largely unexplored. In this paper, we adapt the popular dependency parsing model, the biaffine parser, to this entity relation extraction task. Being different from the original dependency parsing model which recognizes dependency relations between words, we identify relations between groups of words with layout information instead. We have compared different representations of the semantic entity…
Singapore University of Technology and Design（新加坡科技设计大学）
Dependency trees convey rich structural information that is proven useful for extracting relations among entities in text. However, how to effectively make use of relevant information while ignoring irrelevant information from the dependency trees remains a challenging research question. Existing approaches employing rule based hard-pruning strategies for selecting relevant partial dependency structures may not always yield optimal results. In this work, we propose Attention Guided Graph Convolutional Networks (AGGCNs), a novel model which directly takes full dependency trees as inputs. Our mo…
Indiana University（印第安纳大学）；Swarthmore College（斯沃斯莫尔学院）；University of Wisconsin – Madison（威斯康星大学麦迪逊分校）
We consider the task of KBP slot filling -- extracting relation information from newswire documents for knowledge base construction. We present our pipeline, which employs Relational Dependency Networks (RDNs) to learn linguistic patterns for relation extraction. Additionally, we demonstrate how several components such as weak supervision, word2vec features, joint learning and the use of human advice, can be incorporated in this relational framework. We evaluate the different components in the benchmark KBP 2015 task and show that RDNs effectively model a diverse set of features and perform co…
Information Extraction (IE) for semi-structured document images is often approached as a sequence tagging problem by classifying each recognized input token into one of the IOB (Inside, Outside, and Beginning) categories. However, such problem setup has two inherent limitations that (1) it cannot easily handle complex spatial relationships and (2) it is not suitable for highly structured information, which are nevertheless frequently observed in real-world document images. To tackle these issues, we first formulate the IE task as spatial dependency parsing problem that focuses on the relations…
We introduce a biomedical information extraction (IE) pipeline that extracts biological relationships from text and demonstrate that its components, such as named entity recognition (NER) and relation extraction (RE), outperform state-of-the-art in BioNLP. We apply it to tens of millions of PubMed abstracts to extract protein-protein interactions (PPIs) and augment these extractions to a biomedical knowledge graph that already contains PPIs extracted from STRING, the leading structured PPI database. We show that, despite already containing PPIs from an established structured source, augmenting…
Nara Institute of Science and Technology（奈良先端科学技术大学院大学）
We propose an 'end-to-end' character-based recurrent neural network that extracts disease named entities from a Japanese medical text and simultaneously judges its modality as either positive or negative; i.e., the mentioned disease or symptom is affirmed or negated. The motivation to adopt neural networks is to learn effective lexical and structural representation features for Entity Recognition and also for Positive/Negative classification from an annotated corpora without explicitly providing any rule-based or manual feature sets. We confirmed the superiority of our method over previous cha…
Mila - Quebec AI Institute（米拉-魁北克人工智能研究所）；School of Computer Science, McGill University（麦吉尔大学计算机学院）；Stanford University（斯坦福大学）
Much recent work suggests that incorporating syntax information from dependency trees can improve task-specific transformer models. However, the effect of incorporating dependency tree information into pre-trained transformer models (e.g., BERT) remains unclear, especially given recent studies highlighting how these models implicitly encode syntax. In this work, we systematically study the utility of incorporating dependency trees into pre-trained transformers on three representative information extraction tasks: semantic role labeling (SRL), named entity recognition, and relation extraction. …
Open Information Extraction (OpenIE) aims to extract relational tuples from open-domain sentences. Traditional rule-based or statistical models have been developed based on syntactic structures of sentences, identified by syntactic parsers. However, previous neural OpenIE models under-explore the useful syntactic information. In this paper, we model both constituency and dependency trees into word-level graphs, and enable neural OpenIE to learn from the syntactic structures. To better fuse heterogeneous information from both graphs, we adopt multi-view learning to capture multiple relationship…
Reproducibility is an important task in scientific research. It is crucial for researchers to compare newly developed systems with the state-of-the-art to assess whether they made a breakthrough. However previous works may not be immediately reproducible, for example due to the lack of source code. In this work we reproduce DEXTER, a system to automatically extract Gene-Disease Associations (GDAs) from biomedical abstracts. The goal is to provide a benchmark for future works regarding Relation Extraction (RE), enabling researchers to test and compare their results.
Hallucination-Resistant Relation Extraction via Dependency-Aware Sentence Simplification and Two-tiered Hierarchical Refinement
Shanghai Jiao Tong University（上海交通大学）；University of California San Diego（加州大学圣地亚哥分校）；Mohamed bin Zayed University of Artificial Intelligence（穆罕默德·本·扎耶德人工智能大学）；Alibaba Group（阿里巴巴集团）
Beijing Institute of Technology（北京理工大学）；University of Southern California（南加州大学）；Tsinghua University（清华大学）；Harvard T.H.Chan School of Public Health（哈佛陈曾熙公共卫生学院）；Harvard Medical School（哈佛医学院）；Broad Institute of MIT and Harvard（麻省理工学院和哈佛大学博德研究所）；Harvard Data Science Initiative（哈佛数据科学研究院）
Objective: Disease knowledge graphs are a way to connect, organize, and access disparate information about diseases with numerous benefits for artificial intelligence (AI). To create knowledge graphs, it is necessary to extract knowledge from multimodal datasets in the form of relationships between disease concepts and normalize both concepts and relationship types. Methods: We introduce REMAP, a multimodal approach for disease relation extraction and classification. The REMAP machine learning approach jointly embeds a partial, incomplete knowledge graph and a medical language dataset into a c…
Institute for Artificial Intelligence and Decision Support（人工智能与决策支持研究所）；Medical University of Vienna（维也纳医科大学）
Deep neural networks and other intricate Artificial Intelligence (AI) models have reached high levels of accuracy on many biomedical natural language processing tasks. However, their applicability in real-world use cases may be limited due to their vague inner working and decision logic. A post-hoc explanation method can approximate the behavior of a black-box AI model by extracting relationships between feature values and outcomes. In this paper, we introduce a post-hoc explanation method that utilizes confident itemsets to approximate the behavior of black-box classifiers for medical informa…
Indiana University Purdue University Indianapolis（印第安纳大学与普渡大学印第安纳波利斯联合分校）
Extracting cause-effect entities from medical literature is an important task in medical information retrieval. A solution for solving this task can be used for compilation of various causality relations, such as, causality between disease and symptoms, between medications and side effects, between genes and diseases, etc. Existing solutions for extracting cause-effect entities work well for sentences where the cause and the effect phrases are name entities, single-word nouns, or noun phrases consisting of two to three words. Unfortunately, in medical literature, cause and effect phrases in a …
Existing works on information extraction (IE) have mainly solved the four main tasks separately (entity mention recognition, relation extraction, event trigger detection, and argument extraction), thus failing to benefit from inter-dependencies between tasks. This paper presents a novel deep learning model to simultaneously solve the four tasks of IE in a single model (called FourIE). Compared to few prior work on jointly performing four IE tasks, FourIE features two novel contributions to capture inter-dependencies between tasks. First, at the representation level, we introduce an interaction…
This paper presents our participation in the AGAC Track from the 2019 BioNLP Open Shared Tasks. We provide a solution for Task 3, which aims to extract "gene - function change - disease" triples, where "gene" and "disease" are mentions of particular genes and diseases respectively and "function change" is one of four pre-defined relationship types. Our system extends BERT (Devlin et al., 2018), a state-of-the-art language model, which learns contextual language representations from a large unlabelled corpus and whose parameters can be fine-tuned to solve specific tasks with minimal additional …
Joint entity and relation extraction framework constructs a unified model to perform entity recognition and relation extraction simultaneously, which can exploit the dependency between the two tasks to mitigate the error propagation problem suffered by the pipeline model. Current efforts on joint entity and relation extraction focus on enhancing the interaction between entity recognition and relation extraction through parameter sharing, joint decoding, or other ad-hoc tricks (e.g., modeled as a semi-Markov decision process, cast as a multi-round reading comprehension task). However, there are…
Automatic Extraction of Disease Risk Factors from Medical Publications
School of Computer Science, The Academic College of Tel Aviv-Yaffo（特拉维夫-雅法学术学院计算机科学学院）；Division of Cardiology, Tel-Aviv Sourasky Medical Center（特拉维夫苏拉斯基医疗中心心脏病科）；Faculty of Medicine, The Hebrew University of Jerusalem（希伯来大学医学院）；Bioinformatics, School of Computer Science, The Academic College of Tel Aviv-Yaffo（特拉维夫-雅法学术学院计算机科学学院生物信息学方向）
Web 2.0 has brought with it numerous user-produced data revealing one's thoughts, experiences, and knowledge, which are a great source for many tasks, such as information extraction, and knowledge base construction. However, the colloquial nature of the texts poses new challenges for current natural language processing techniques, which are more adapt to the formal form of the language. Ellipsis is a common linguistic phenomenon that some words are left out as they are understood from the context, especially in oral utterance, hindering the improvement of dependency parsing, which is of great …
Comparison of pipeline, sequence-to-sequence, and GPT models for end-to-end relation extraction: experiments with the rare disease use-case
Computer Science Department, University of Kentucky, USA（肯塔基大学计算机科学系）；Division of Biomedical Informatics, Dept. of Internal Medicine, University of Kentucky, USA（肯塔基大学生物医学信息学部）
College of Information and Computer Sciences（信息与计算机科学学院）；University of Massachusetts Amherst（马萨诸塞大学阿默斯特分校）
Dependency parsing research, which has made significant gains in recent years, typically focuses on improving the accuracy of single-tree predictions. However, ambiguity is inherent to natural language syntax, and communicating such ambiguity is important for error analysis and better-informed downstream applications. In this work, we propose a transition sampling algorithm to sample from the full joint distribution of parse trees defined by a transition-based parsing model, and demonstrate the use of the samples in probabilistic dependency analysis. First, we define the new task of dependency…
National Centre for Text Mining（国家文本挖掘中心）；The University of Manchester（曼彻斯特大学）；Toyota Technological Institute（丰田工业大学）；Artificial Intelligence Research Center (AIRC), National Institute of Advanced Industrial Science and Technology (AIST)（人工智能研究中心（AIRC），产业技术综合研究所（AIST））
Document-level relation extraction is a complex human process that requires logical inference to extract relationships between named entities in text. Existing approaches use graph-based neural models with words as nodes and edges as relations between them, to encode relations across sentences. These models are node-based, i.e., they form pair representations based solely on the two target node representations. However, entity relations can be better expressed through unique edge representations formed as paths between nodes. We thus propose an edge-oriented graph neural model for document-lev…
To minimize the accelerating amount of time invested in the biomedical literature search, numerous approaches for automated knowledge extraction have been proposed. Relation extraction is one such task where semantic relations between the entities are identified from the free text. In the biomedical domain, extraction of regulatory pathways, metabolic processes, adverse drug reaction or disease models necessitates knowledge from the individual relations, for example, physical or regulatory interactions between genes, proteins, drugs, chemical, disease or phenotype. In this paper, we study the …
Bosch Center for Artificial Intelligence（博世人工智能中心）
The performance of relation extraction models has increased considerably with the rise of neural networks. However, a key issue of neural relation extraction is robustness: the models do not scale well to long sentences with multiple entities and relations. In this work, we address this problem with an enriched attention mechanism. Attention allows the model to focus on parts of the input sentence that are relevant to relation extraction. We propose to enrich the attention function with features modeling knowledge about the relation arguments and the shortest dependency path between them. Thus…
Rensselaer Polytechnic Institute（伦斯勒理工学院）；IBM T.J. Watson Research Center（IBM T.J. 沃森研究中心）
Slot Filling (SF) aims to extract the values of certain types of attributes (or slots, such as person:cities\_of\_residence) for a given entity from a large collection of source documents. In this paper we propose an effective DNN architecture for SF with the following new strategies: (1). Take a regularized dependency graph instead of a raw sentence as input to DNN, to compress the wide contexts between query and candidate filler; (2). Incorporate two attention mechanisms: local attention learned from query and candidate filler, and global attention learned from external knowledge bases, to g…
King Abduallah University of Science and Technology（阿卜杜拉国王科技大学）
In natural language processing, relation extraction seeks to rationally understand unstructured text. Here, we propose a novel SpanBERT-based graph convolutional network (DG-SpanBERT) that extracts semantic features from a raw sentence using the pre-trained language model SpanBERT and a graph convolutional network to pool latent features. Our DG-SpanBERT model inherits the advantage of SpanBERT on learning rich lexical features from large-scale corpus. It also has the ability to capture long-range relations between entities due to the usage of GCN on dependency tree. The experimental results s…
PrionNER: A Named Entity Recognition Dataset for Prion Disease Biomedical Literature
The University of Tokyo（东京大学）；Medical Doctor, Independent Researcher（医学博士，独立研究员）；Center for Language AI Research, Tohoku University（语言人工智能研究中心，东北大学）；RIKEN Center for Advanced Intelligence Project（日本理化学研究院高级智能项目中心）；National Institute of Informatics（信息机构国家研究所）
University of Hamburg（汉堡大学）；University of Mannheim（曼海姆大学）
We present DepCC, the largest-to-date linguistically analyzed corpus in English including 365 million documents, composed of 252 billion tokens and 7.5 billion of named entity occurrences in 14.3 billion sentences from a web-scale crawl of the \textsc{Common Crawl} project. The sentences are processed with a dependency parser and with a named entity tagger and contain provenance information, enabling various applications ranging from training syntax-based word embeddings to open information extraction and question answering. We built an index of all sentences and their linguistic meta-data ena…
Dependency context-based word embedding jointly learns the representations of word and dependency context, and has been proved effective in aspect term extraction. In this paper, we design the positional dependency-based word embedding (PoD) which considers both dependency context and positional context for aspect term extraction. Specifically, the positional context is modeled via relative position encoding. Besides, we enhance the dependency context by integrating more lexical information (e.g., POS tags) along dependency paths. Experiments on SemEval 2014/2015/2016 datasets show that our ap…
Open information extraction (OIE) is the process to extract relations and their arguments automatically from textual documents without the need to restrict the search to predefined relations. In recent years, several OIE systems for the English language have been created but there is not any system for the Vietnamese language. In this paper, we propose a method of OIE for Vietnamese using a clause-based approach. Accordingly, we exploit Vietnamese dependency parsing using grammar clauses that strives to consider all possible relations in a sentence. The corresponding clause types are identifie…
This paper presents a contextualized graph attention network that combines edge features and multiple sub-graphs for improving relation extraction. A novel method is proposed to use multiple sub-graphs to learn rich node representations in graph-based networks. To this end multiple sub-graphs are obtained from a single dependency tree. Two types of edge features are proposed, which are effectively combined with GAT and GCN models to apply for relation extraction. The proposed model achieves state-of-the-art performance on Semeval 2010 Task 8 dataset, achieving an F1-score of 86.3.
Siemens AG（西门子股份公司）；University of Munich (LMU)（慕尼黑大学）
Past work in relation extraction mostly focuses on binary relation between entity pairs within single sentence. Recently, the NLP community has gained interest in relation extraction in entity pairs spanning multiple sentences. In this paper, we propose a novel architecture for this task: inter-sentential dependency-based neural networks (iDepNN). iDepNN models the shortest and augmented dependency paths via recurrent and recursive neural networks to extract relationships within (intra-) and across (inter-) sentence boundaries. Compared to SVM and neural network baselines, iDepNN is more robus…
Evidence-based medicine, the practice in which healthcare professionals refer to the best available evidence when making decisions, forms the foundation of modern healthcare. However, it relies on labour-intensive systematic reviews, where domain specialists must aggregate and extract information from thousands of publications, primarily of randomised controlled trial (RCT) results, into evidence tables. This paper investigates automating evidence table generation by decomposing the problem across two language processing tasks: \textit{named entity recognition}, which identifies key entities w…
Southwest Jiaotong University（西南交通大学）；University of Illinois at Chicago（伊利诺伊大学芝加哥分校）；Fern University in Hagen（哈根函授大学）
Aspect term extraction is one of the important subtasks in aspect-based sentiment analysis. Previous studies have shown that using dependency tree structure representation is promising for this task. However, most dependency tree structures involve only one directional propagation on the dependency tree. In this paper, we first propose a novel bidirectional dependency tree network to extract dependency structure features from the given sentences. The key idea is to explicitly incorporate both representations gained separately from the bottom-up and top-down propagation on the given dependency …
Peking University（北京大学）；Microsoft Research（微软研究院）；University of Edinburgh（爱丁堡大学）
In this paper, we develop a novel approach to aspect term extraction based on unsupervised learning of distributed representations of words and dependency paths. The basic idea is to connect two words (w1 and w2) with the dependency path (r) between them in the embedding space. Specifically, our method optimizes the objective w1 + r = w2 in the low-dimensional space, where the multi-hop dependency paths are treated as a sequence of grammatical relations and modeled by a recurrent neural network. Then, we design the embedding features that consider linear context and dependency context informat…
In this paper, we propose to use a set of simple, uniform in architecture LSTM-based models to recover different kinds of temporal relations from text. Using the shortest dependency path between entities as input, the same architecture is used to extract intra-sentence, cross-sentence, and document creation time relations. A "double-checking" technique reverses entity pairs in classification, boosting the recall of positive cases and reducing misclassifications between opposite classes. An efficient pruning algorithm resolves conflicts globally. Evaluated on QA-TempEval (SemEval2015 Task 5), o…
Northwestern University Feinberg School of Medicine（西北大学范伯格医学院）；Bluhm Cardiovascular Institute of Northwestern Medicine（西北大学布鲁姆心血管研究所）；University of Kansas Medical Center（堪萨斯大学医学中心）
Novel information retrieval methods to identify citations relevant to a clinical topic can overcome the knowledge gap existing between the primary literature (MEDLINE) and online clinical knowledge resources such as UpToDate. Searching the MEDLINE database directly or with query expansion methods returns a large number of citations that are not relevant to the query. The current study presents a citation retrieval system that retrieves citations for evidence-based clinical knowledge summarization. This approach combines query expansion, concept-based screening algorithm, and concept-based vect…
Computer School, Wuhan University（武汉大学计算机学院）；National University of Singapore（新加坡国立大学）
Document-level relation extraction aims to discover relations between entities across a whole document. How to build the dependency of entities from different sentences in a document remains to be a great challenge. Current approaches either leverage syntactic trees to construct document-level graphs or aggregate inference information from different sentences. In this paper, we build cross-sentence dependencies by inferring compositional relations between inter-sentence mentions. Adopting aggressive linking strategy, intermediate relations are reasoned on the document-level graphs by mention c…
