The Cosmological Principle, the combined assumptions of cosmological isotropy and homogeneity, underpins the standard model of Big Bang cosmology with which we interpret astronomical observations. A new test of isotropy over the redshift range $2<z<4$ and across large angular scales on the sky is presented. We use the cosmological distribution of neutral hydrogen, as probed by the Ly$α$ forest seen towards distant quasars. The Sloan Digital Sky Survey provides the largest dataset of quasar spectra available to date. We use combined information from Data Releases 12 and 14 to select a sample of 142,661 quasars most suitable for this purpose. The scales covered by the data extend beyond post-inflation causality scales, thus probing initial conditions in the early universe. We identify significant spatially correlated systematic effects that can emulate cosmological anisotropy. Once these systematics have been accounted for, the data are found to be consistent with isotropy, providing an important independent check on the standard model, consistent with results from cosmic microwave background data.
We present an analysis of the evolution of the Lyman-series forest into the epoch of reionization using cosmological radiative transfer simulations in a scenario where reionization ends late. We explore models with different midpoints of reionization and gas temperatures. We find that once the simulations have been calibrated to match the mean flux of the observed Lyman-$α$ forest at $4 < z < 6$, they also naturally reproduce the distribution of effective optical depths of the Lyman-$β$ forest in this redshift range. We note that the tail of the largest optical depths that is most challenging …
We compare the low redshift (z ~ 0.1) Lyman-alpha forest from hydrodynamical simulations with data from the Cosmic Origin Spectrograph (COS). We find tension between the observed number of lines with b-parameters in the range 25-45 km/s and the predictions from simulations that incorporate either vigorous feedback from active galactic nuclei or that exclude feedback altogether. The gas in these simulations is, respectively, either too hot to contribute to the Lyman-alpha absorption or too cold to produce the required line widths. Matching the observed b-parameter distribution therefore require…
The inhomogeneous cosmological reionization process leaves tangible imprints in the intergalactic medium down to z=4-5. The Lyman-alpha forest flux power spectrum provides a potentially powerful probe of the epoch of reionization. With the existing SDSS I/II quasar sample we show that two cosmological reionization scenarios, one completing reionization at z=6 and the other at z=9, can be distinguished at ~7 sigma level by utilizing Lyman alpha forest absorption spectra at z=4.5+-0.5, in the absence of other physical processes that may also affect the Lyman alpha flux power spectrum. The redshi…
The Lyman-alpha forest is the large-scale structure probe for which we appear to have modeling control to the highest wavenumbers. This makes the Lyman-alpha forest of great interest for constraining the warmness/fuzziness of dark matter and the timing of reionization processes. However, the standard statistic, the Lyman-alpha forest power spectrum, is unable to strongly constrain the IGM temperature-density relation, and this inability further limits how well other high wavenumber-sensitive parameters can be constrained. With the aim of breaking these degeneracies, we measure the power spectr…
Recent work has shown that the z~2.5 Lyman-alpha forest on large scales encodes information about the galaxy and quasar populations that keep the intergalactic medium photoionized. We present the first forecasts for constraining the populations with data from current and next-generation surveys. At a minimum the forest should tell us whether galaxies or, conversely, quasars dominate the photon production. The number density and clustering strength of the ionising sources might be estimated to sub-10% precision with a DESI-like survey if degeneracies (e.g., with the photon mean-free-path, small…
Faint star-forming galaxies at $z\sim 2-3$ can be used as alternative background sources to probe the Lyman-$α$ forest in addition to quasars, yielding high sightline densities that enable 3D tomographic reconstruction of the foreground absorption field. Here, we present the first data release from the COSMOS Lyman-Alpha Mapping And Mapping Observations (CLAMATO) Survey, which was conducted with the LRIS spectrograph on the Keck-I telescope. Over an observational footprint of 0.157$\mathrm{deg}^2$ within the COSMOS field, we used 240 galaxies and quasars at $2.17<z<3.00$, with a mean comoving …
We investigate the large-scale structure of Lyman-alpha emission intensity in the Universe at redshifts z=2-3.5 using cross-correlation techniques. Our Lya emission samples are spectra of BOSS Luminous Red Galaxies from Data Release 12 with the best fit model galaxies subtracted. We cross-correlate the residual flux in these spectra with BOSS quasars, and detect a positive signal on scales 1-15 Mpc/h. We identify and remove a source of contamination not previously accounted for, due to the effects of quasar clustering on cross-fibre light. Corrected, our quasar-Lya emission cross-correlation i…
In this work we expand upon the Tomographic Absorption Reconstruction and Density Inference Scheme (TARDIS) in order to include multiple tracers while reconstructing matter density fields at Cosmic Noon (z ~ 2-3). In particular, we jointly reconstruct the underlying density field from simulated Lyman-Alpha forest observations at $z\sim 2.5$ and an overlapping galaxy survey. We find that these data are synergistic, with the Lyman Alpha forest providing reconstruction of low density regions and galaxy surveys tracing the density peaks. We find a more accurate power spectra reconstruction going t…
We present the first detection of a correlation between the Lyman-$α$ forest and cosmic microwave background (CMB) lensing. For each Lyman-$α$ forest in SDSS-III/BOSS DR12, we correlate the one-dimensional power spectrum with the CMB lensing convergence on the same line of sight from Planck. This measurement constitutes a position-dependent power spectrum, or a squeezed bispectrum, and quantifies the non-linear response of the Lyman-$α$ forest power spectrum to a large-scale overdensity. The signal is measured at 5~$σ$ and is consistent with the $Λ$CDM expectation. We measure the linear bias o…
We re-analyse high redshift and high resolution Lyman-$α$ forest spectra considered in (Viel et al 2013), seeking to constrain the properties of warm dark matter particles. Compared to this previous work, we consider a wider range of thermal histories of the intergalactic medium. We find that both warm and cold dark matter models can explain the cut-off observed in the flux power spectra of high-resolution observations equally well. This implies, however, very different thermal histories and underlying re-ionisation models. We discuss how to remove this degeneracy.
The Lyman-alpha forest is a unique probe of large-scale matter density fluctuations at high redshift (z > 2). It is possible to obtain 3D maps of the matter distribution from Lyman-alpha data, using tomographic reconstruction methods. Here, we present the largest tomographic map of matter fluctuations at z > 2, over the Gpc^3 volume covered by Lyman-alpha forest from SDSS-IV quasar spectra in the Stripe 82 field. We present a catalog of high-redshift voids constructed from this map. The measurement of the cross-correlation between these voids and the Lyman-alpha forest provides the first obser…
Studies of low redshift galaxy clusters suggest the intra-cluster medium (ICM) has experienced non-gravitational heating during the formation phase of the clusters. Using simple phenomenological heating prescriptions, we simulate the effect of this preheating of the nascent ICM in galaxy proto-clusters and examine its effect on Lyman-$α$ (Ly$α$) forest tomographic maps. We analyse a series of cosmological zoom-in simulations of proto-clusters within the framework of the Ly$α$ transmission-dark matter (DM) density distribution. We find that the more energy is injected into the proto-ICM at $z$ …
We study the sensitivity of the $z=0.1$ Lyman-$α$ Forest observables, such as the column density distribution function (CDD), flux PDF, flux power spectrum, and line width distribution, to sub-grid models of active galactic nuclei (AGN) feedback using the Illustris and IllustrisTNG (TNG) cosmological simulations. The two simulations share an identical Ultraviolet Background (UVB) prescription and similar cosmological parameters, but TNG features an entirely reworked AGN feedback model. Due to changes in the AGN radio mode model, the original Illustris simulations have a factor of 2-3 fewer Lym…
Recent Lyman-$α$ forest tomography measurements of the intergalactic medium (IGM) have revealed a wealth of cosmic structures at high redshift ($z\sim 2.5$). In this work, we present the Tomographic Absorption Reconstruction and Density Inference Scheme (TARDIS), a new chrono-cosmographic analysis tool for understanding the formation and evolution of these observed structures. We use maximum likelihood techniques with a fast non-linear gravitational model to reconstruct the initial density field of the observed regions. We find that TARDIS allows accurate reconstruction of smaller scale struct…
Active galactic nuclei (AGN) feedback models are generally calibrated to reproduce galaxy observables such as the stellar mass function and the bimodality in galaxy colors. We use variations of the AGN feedback implementations in the IllustrisTNG (TNG) and Simba cosmological hydrodynamic simulations to show that the low redshift Lyman-$α$ forest can provide constraints on the impact of AGN feedback. We show that TNG over-predicts the number density of absorbers at column densities $N_{\rm HI} < 10^{14}$ cm$^{-2}$ compared to data from the Cosmic Origins Spectrograph (in agreement with previous…
We quantify the impact of massive neutrinos on the statistics of low density regions in the intergalactic medium (IGM) as probed by the Lyman-alpha forest at redshifts z=2.2--4. Based on mock but realistic quasar (QSO) spectra extracted from hydrodynamic simulations with cold dark matter, baryons and neutrinos, we find that the probability distribution of weak Lyman-alpha absorption features, as sampled by Lyman-alpha flux regions at high transmissivity, is strongly affected by the presence of massive neutrinos. We show that systematic errors affecting the Lyman-alpha forest reduce but do not …
Continuum fitting is an important aspect of Lyman-alpha forest science, since errors in the estimated optical depths scale with the fractional continuum error. However, traditional methods of estimating continua in noisy and moderate-resolution spectra (S/N < 10 pixel^-1 and R ~ 2000, respectively, such as SDSS) using power-law extrapolation or the mean spectrum, achieve no better than ~ 10-15% RMS accuracy. To improve on this, we introduce mean-flux regulated/principal component analysis (MF-PCA) continuum fitting. In this technique, PCA fitting is carried out redwards of the quasar Lyman-alp…
In this work we extend our recently developed multi-fidelity emulation technique to the simulated Lyman-$α$ forest flux power spectrum. Multi-fidelity emulation allows interpolation of simulation outputs between cosmological parameters using many cheap low-fidelity simulations and a few expensive high-fidelity simulations. Using a test suite of small box (30 Mpc/h) simulations, we show that multi-fidelity emulation is able to reproduce the Lyman-$α$ forest flux power spectrum well, achieving an average accuracy when compared to a test suite of $0.8\%$. We further show that it has a substantial…
We present the characteristics of the Damped Lyman-$α$ (DLA) systems found in the data release DR16 of the extended Baryon Oscillation Spectroscopic Survey (eBOSS) of the Sloan Digital Sky Survey (SDSS). DLAs were identified using the convolutional neural network (CNN) of~\cite{Parks2018}. A total of 117,458 absorber candidates were found with $2 \leq \zdla \leq 5.5$ and $19.7 \leq \lognhi \leq 22$, including 57,136 DLA candidates with $\lognhi \geq 20.3$. Mock quasar spectra were used to estimate DLA detection efficiency and the purity of the resulting catalog. Restricting the quasar sample t…
The post-reionization thermal state of the intergalactic medium is characterized by a power-law relationship between temperature and density, with a slope determined by the parameter $γ$. We describe a new method to measure $γ$ using the ratio of flux curvature in the Lyman-$α$ and $β$ forests. At a given redshift, this curvature ratio incorporates information from the different gas densities traced by Lyman-$α$ and $β$ absorption. It is relatively simple and fast to compute and appears robust against several observational uncertainties. We apply this technique to a sample of 27 high-resolutio…
The angular positions of quasars are deflected by the gravitational lensing effect of foreground matter. The Lyman-alpha forest seen in the spectra of these quasars is therefore also lensed. We propose that the signature of weak gravitational lensing of the forest could be measured using similar techniques that have been applied to the lensed Cosmic Microwave Background, and which have also been proposed for application to spectral data from 21cm radio telescopes. As with 21cm data, the forest has the advantage of spectral information, potentially yielding many lensed "slices" at different red…
We provide an analytical description of the line broadening of HI absorbers in the Lyman-alpha forest resulting from Doppler broadening and Jeans smoothing. We demonstrate that our relation captures the dependence of the line-width on column density for narrow lines in z~3 mock spectra remarkably well. Broad lines at a given column density arise when the underlying density structure is more complex, and such clustering is not captured by our model. Our understanding of the line broadening opens the way to a new method to characterise the thermal state of the intergalactic medium and to determi…
We present the first measurement of the large-scale cross-correlation of Lyman alpha forest absorption and Damped Lyman alpha systems (DLA), using the 9th Data Release of the Baryon Oscillation Spectroscopic Survey (BOSS). The cross-correlation is clearly detected on scales up to 40 Mpc/h and is well fitted by the linear theory prediction of the standard Cold Dark Matter model of structure formation with the expected redshift distortions, confirming its origin in the gravitational evolution of structure. The amplitude of the DLA-Lyman alpha cross-correlation depends on only one free parameter,…
We present new simulations of the flux power spectrum of the Lyman $α$ forest as a means to investigate the effects of time-dependent dark energy on structure formation. We use a linearized parameterization of the time-dependence of the dark energy equation of state and sample the parameters ($w_0,w_a$) from the the extrema of the allowed observational values as determined by the Planck results. Each chosen ($w_0,w_a$) pair is then used in a high-resolution, large-scale cosmological simulation run with a modified version of the publicly available SPH code {\tt GADGET-2}. From each of these sim…
Detection of primordial non-Gaussianity will give us an unprecedented detail of the physics of inflation. As observational probes are now exploring new expanses of the inflationary landscape, it is crucial to distinguish and disentangle effects of various non-Gaussianities beyond f_NL. In this work, we calculate the effects of non-Gaussianities parametrized by f_NL and the cubic-order g_NL, on the Lyman-alpha-forest flux measurements. We give the expressions of the bias due to f_NL and g_NL, which can be deduced from accurate measurements of the transmitted flux. We show how these two effects …
The squeezed-limit bispectrum, which is generated by nonlinear gravitational evolution as well as inflationary physics, measures the correlation of three wavenumbers, in the configuration where one wavenumber is much smaller than the other two. Since the squeezed-limit bispectrum encodes the impact of a large-scale fluctuation on the small-scale power spectrum, it can be understood as how the small-scale power spectrum "responds" to the large-scale fluctuation. Viewed in this way, the squeezed-limit bispectrum can be calculated using the response approach even in the cases which do not submit …
The amplitude of the metagalactic ultraviolet background (UVB) at large-scales is impacted by two factors. First, it naturally attenuates at scales larger than mean-free-path of UVB photons due to the absorption by neutral intergalactic medium. Second, there are discrete and rare ionizing sources distributing in the Universe, emitting the UVB photons, and thus enhancing the local UVB amplitude. Therefore, for cosmological probe that is sensitive to the UVB amplitude and capable of detecting the large scale like Lyman-$α$ forest spectrum, the fluctuation due to the clustering of ionizing source…
The baryon-acoustic oscillation (BAO) feature in the Lyman-$α$ forest is one of the key probes of the cosmic expansion rate at redshifts z~2.5, well before dark energy is believed to have become dynamically significant. A key advantage of the BAO as a standard ruler is that it is a sharp feature and hence is more robust against broadband systematic effects than other cosmological probes. However, if the Lyman-$α$ forest transmission is sensitive to the initial streaming velocity of the baryons relative to the dark matter, then the BAO peak position can be shifted. Here we investigate this sens…
We measure the large-scale cross-correlation of quasars with the Lyman α forest absorption in redshift space, using ~ 60000 quasar spectra from Data Release 9 (DR9) of the Baryon Oscillation Spectroscopic Survey (BOSS). The cross-correlation is detected over a wide range of scales, up to comoving separations r of 80 Mpc/h. For r > 15 Mpc/h, we show that the cross-correlation is well fitted by the linear theory prediction for the mean overdensity around a quasar host halo in the standard ΛCDM model, with the redshift distortions indicative of gravitational evolution detected at high confidence.…
With recent Lyman-alpha forest data from BOSS and XQ-100, some studies suggested that the lower mass limit on the fuzzy dark matter (FDM) particles is lifted up to $10^{-21}\,\mathrm{eV}$. However, such a limit was obtained by $Λ$CDM simulations with the FDM initial condition and the quantum pressure (QP) was not taken into account which could have generated non-trivial effects in large scales structures. We investigate the QP effects in cosmological simulations systematically, and find that the QP leads to further suppression of the matter power spectrum at small scales, as well as the halo m…
We study and compare fitting methods for the Lyman-$α$ (Ly$α$) forest 3D correlation function. We use the nested sampler PolyChord and the community code picca to perform a Bayesian analysis which we compare with previous frequentist analyses. By studying synthetic correlation functions, we find that the frequentist profile likelihood produces results in good agreement with a full Bayesian analysis. On the other hand, Maximum Likelihood Estimation with the Gaussian approximation for the uncertainties is inadequate for current data sets. We compute for the first time the full posterior distribu…
We have proposed a method for measuring weak lensing using the Lyman-alpha forest. Here we estimate the noise expected in weak lensing maps and power spectra for different sets of observational parameters. We find that surveys of the size and quality of the ones being done today and ones planned for the future will be able to measure the lensing power spectrum at a source redshift of z~2.5 with high precision and even be able to image the distribution of foreground matter with high fidelity on degree scales. For example, we predict that Lyman-alpha forest lensing measurement from the Dark Ener…
We explore the use of Deep Learning to infer physical quantities from the observable transmitted flux in the Lyman-alpha forest. We train a Neural Network using redshift z=3 outputs from cosmological hydrodynamic simulations and mock datasets constructed from them. We evaluate how well the trained network is able to reconstruct the optical depth for Lyman-alpha forest absorption from noisy and often saturated transmitted flux data. The Neural Network outperforms an alternative reconstruction method involving log inversion and spline interpolation by approximately a factor of 2 in the optical d…
We use hydrodynamic cosmological simulations in a (600 Mpc)^3 volume to study the observability of baryon acoustic oscillations (BAO) in the intergalactic medium as probed by Lyman alpha forest (LAF) absorption. The large scale separation between the wavelength of the BAO mode (~150 Mpc) and the size of LAF absorbers (~100 kpc) makes this a numerically challenging problem. We report on several 2048^3 simulations of the LAF using the ENZO code. We adopt WMAP5 concordance cosmological parameters and power spectrum including BAO perturbations. 5000 synthetic HI absorption line spectra are generat…
In this work, we analyze the Lyman-$α$ forest in cosmological hydrodynamical simulations of chameleon-type f(R) gravity with the goal to assess whether the impact of such models is detectable in absorption line statistics. We carry out a set of hydrodynamical simulations with the cosmological simulation code MG-GADGET, including star formation and cooling effects, and create synthetic Lyman-$α$ absorption spectra from the simulation outputs. We statistically compare simulations with f(R) and ordinary general relativity, focusing on flux probability distribution functions (PDFs) and flux power-…
We measure the effect of high column density absorbing systems of neutral hydrogen (HI) on the one-dimensional (1D) Lyman-alpha forest flux power spectrum using cosmological hydrodynamical simulations from the Illustris project. High column density absorbers (which we define to be those with HI column densities $N(\mathrm{HI}) > 1.6 \times 10^{17}\,\mathrm{atoms}\,\mathrm{cm}^{-2}$) cause broadened absorption lines with characteristic damping wings. These damping wings bias the 1D Lyman-alpha forest flux power spectrum by causing absorption in quasar spectra away from the location of the absor…
In Lyman-alpha forest measurements it is generally assumed that quasars are mere background light sources which are uncorrelated with the forest. Gravitational lensing of the quasars violates this assumption. This effect leads to a measurement bias, but more interestingly it provides a valuable signal. The lensing signal can be extracted by correlating quasar magnitudes with the flux power spectrum and with the flux decrement. These correlations will be challenging to measure but their detection provides a direct measure of how features in the Lyman-alpha forest trace the underlying mass densi…
We compare the observed probability distribution function of the transmission in the \HI\ Lyman-alpha forest, measured from the UVES 'Large Programme' sample at redshifts z=[2,2.5,3], to results from the GIMIC cosmological simulations. Our measured values for the mean transmission and its PDF are in good agreement with published results. Errors on statistics measured from high-resolution data are typically estimated using bootstrap or jack-knife resampling techniques after splitting the spectra into chunks. We demonstrate that these methods tend to underestimate the sample variance unless the …
The hydrogen Ly$α$ forest is an important probe of the $z>2$ Universe that is otherwise challenging to observe with galaxy redshift surveys, but this technique has traditionally been limited to 1D studies in front of bright quasars. However, by pushing to faint magnitudes ($g>23$) with 8-10m large telescopes it becomes possible to exploit the high area density of high-redshift star-forming galaxies to create 3D tomographic maps of large-scale structure in the foreground. I describe the first pilot observations using this technique, as well discuss future surveys and the resulting science possi…
We investigate the possibility of using the cross-correlation of the Lyman-alpha forest and redshifted 21-cm emission to detect the baryon acoustic oscillation (BAO). The standard Fisher matrix formalism is used to determine the accuracy with which it will be possible to measure cosmological distances using this signal. Earlier predictions indicate that it will be possible to measure the dilation factor D_V with 1.9 % accuracy at z=2.5 from the BOSS Lyman-alpha forest auto-correlation. In this paper we investigate if it is possible to improve the accuracy using the cross-correlation. We use a …
Cosmological hydrodynamic simulations can accurately predict the properties of the intergalactic medium (IGM), but only under the condition of retaining high spatial resolution necessary to resolve density fluctuations in the IGM. This resolution constraint prohibits simulating large volumes, such as those probed by BOSS and future surveys, like DESI and 4MOST. To overcome this limitation, we present Iteratively Matched Statistics (IMS), a novel method to accurately model the Lyman-alpha forest with collisionless N-body simulations, where the relevant density fluctuations are unresolved. We us…
Massive spectroscopic surveys of high-redshift quasars yield large numbers of correlated Lyman α absorption spectra that can be used to measure large-scale structure. Simulations of these surveys are required to accurately interpret the measurements of correlations and correct for systematic errors. An efficient method to generate mock realizations of Lyman α forest surveys is presented which generates a field over the lines of sight to the survey sources only, instead of having to generate it over the entire three-dimensional volume of the survey. The method can be calibrated to reproduce the…
Maps of the large-scale structure of the Universe at redshifts 2-4 can be made with the Lyman-alpha forest which are complementary to low redshift galaxy surveys. We apply the Wiener interpolation method of Caucci et al. to construct three-dimensional maps from sets of Lyman-alpha forest spectra taken from cosmological hydrodynamic simulations. We mimic some current and future quasar redshift surveys (BOSS, eBOSS and MS-DESI) by choosing similar sightline densities. We use these appropriate subsets of the Lyman-alpha absorption sightlines to reconstruct the full three dimensional Lyman-alpha f…
In recent years, the autocorrelation of the hydrogen Lyman-α forest has been used to observe the baryon acoustic peak at redshift 2 < z < 3.5 using tens of thousands of QSO spectra from the BOSS survey. However, the interstellar medium of the Milky-Way introduces absorption lines into the spectrum of any extragalactic source. These lines, while weak and undetectable in a single BOSS spectrum, could potentially bias the cosmological signal. In order to examine this, we generate absorption line maps by stacking over a million spectra of galaxies and QSOs. We find that the systematics introduced …
We present a theoretical estimate for a new observable: the cross-correlation between the Lyman-alpha flux fluctuations in quasar (QSO) spectra and the convergence of the cosmic microwave background (CMB) as measured along the same line-of-sight. As a first step toward the assessment of its detectability, we estimate the signal-to-noise ratio using linear theory. Although the signal-to-noise is small for a single line-of-sight and peaks at somewhat smaller redshifts than those probed by the Lyman-alpha forest, we estimate a total signal-to-noise of 9 for cross-correlating QSO spectra of SDSS-I…
We present the first simulation of the signature of baryonic acoustic oscillations (BAO) in Lyman alpha forest data containing 180,000 mock quasar sight-lines. We use eight large dark-matter only simulations onto which we paint the Lyman alpha field using the fluctuating Gunn-Peterson approximation. We argue that this approach should be sufficient for the mean signature on the scales of interest. Our results indicate that Lyman alpha flux provides a good tracer of the underlying dark matter field on large scales and that redshift space distortions are well described by a simple linear theory p…
Current results from the Lyman alpha forest assume that the primordial power spectrum of density perturbations follows a simple power law form, with running. We present the first analysis of Lyman alpha data to study the effect of relaxing this strong assumption on primordial and astrophysical constraints. We perform a large suite of numerical simulations, using them to calibrate a minimally parametric framework for describing the power spectrum. Combined with cross-validation, a statistical technique which prevents over-fitting of the data, this framework allows us to reconstruct the power sp…
The sources which reionized the Intergalactic Medium by redshift ~6 are still unknown. A severe constraint on the ionization process is the low emissivity required to maintain the ionization in the Lyman-α forest. Simulation-calibrated observations suggest a production rate of at most only a few photons per baryon. In this work, we present a new solution to this "photon-starvation" problem using a weak background of cosmic magnetic fields, which may be present as a consequence of early-Universe physics and subsequent magneto-hydrodynamical amplification. If present, such magnetic fields can in…
We present methods for interpolating between the 1-D flux power spectrum of the Lyman-$α$ forest, as output by cosmological hydrodynamic simulations. Interpolation is necessary for cosmological parameter estimation due to the limited number of simulations possible. We construct an emulator for the Lyman-$α$ forest flux power spectrum from $21$ small simulations using Latin hypercube sampling and Gaussian process interpolation. We show that this emulator has a typical accuracy of 1.5% and a worst-case accuracy of 4%, which compares well to the current statistical error of 3 - 5% at $z < 3$ from…
We show that comparisons of HeII Lyman-alpha forest lines of sight to nearby quasar populations can strongly constrain the lifetimes and emission geometry of quasars. By comparing the HeII and HI Lyman-alpha forests along a particular line of sight, one can trace fluctuations in the hardness of the radiation field (which are driven by fluctuations in the HeII ionization rate). Because this high-energy background is highly variable - thanks to the rarity of the bright quasars that dominate it and the relatively short attenuation lengths of these photons - it is straightforward to associate feat…
Inhomogeneous reionization enhances the 1D Lyman-$α$ forest power spectrum on large scales at redshifts $z\geq4$. This is due to coherent fluctuations in the ionized hydrogen fraction that arise from large-scale variations in the post-reionization gas temperature, which fade as the gas cools. It is therefore possible to use these relic fluctuations to constrain inhomogeneous reionization with the power spectrum at wavenumbers $\log_{10}(k/{\rm km^{-1}\,s})\lesssim -1.5$. We use the Sherwood-Relics suite of hybrid radiation hydrodynamical simulations to perform a first analysis of new Lyman-$α$…
