The inhomogeneous cosmological reionization process leaves tangible imprints in the intergalactic medium down to z=4-5. The Lyman-alpha forest flux power spectrum provides a potentially powerful probe of the epoch of reionization. With the existing SDSS I/II quasar sample we show that two cosmological reionization scenarios, one completing reionization at z=6 and the other at z=9, can be distinguished at ~7 sigma level by utilizing Lyman alpha forest absorption spectra at z=4.5+-0.5, in the absence of other physical processes that may also affect the Lyman alpha flux power spectrum. The redshift range z=4-5 may provide the best window, because there is still enough transmitted flux and quasars to measure precise statistics of the flux fluctuations, and the IGM still retains a significant amount of memory of reionization.
We present an analysis of the evolution of the Lyman-series forest into the epoch of reionization using cosmological radiative transfer simulations in a scenario where reionization ends late. We explore models with different midpoints of reionization and gas temperatures. We find that once the simulations have been calibrated to match the mean flux of the observed Lyman-$α$ forest at $4 < z < 6$, they also naturally reproduce the distribution of effective optical depths of the Lyman-$β$ forest in this redshift range. We note that the tail of the largest optical depths that is most challenging …
We discuss the possible origin of the double-peaked profiles recently observed in Lyman-Alpha Emitters (LAEs) at the epoch of reionization ($z \gtrsim 6.5$) from obscured active galactic nuclei (AGN). Combining the extent of the Lyman-$α$ near-zones estimated from the blue peak velocity offset in these galaxies, with the ionizing emissivity of quasars at $z \gtrsim 6$, we forecast the intrinsic UV and X-ray luminosities of the AGN needed to give rise to their double-peaked profiles. We also estimate the extent of the obscuration of the AGN by comparing their luminosities to those of similar qu…
Recent observations of the Lyman-alpha forest show large-scale spatial variations in the intergalactic Lyman-alpha opacity that grow rapidly with redshift at z>5, far in excess of expectations from empirically motivated models. Previous studies have attempted to explain this excess with spatial fluctuations in the ionizing background, but found that this required either extremely rare sources or problematically low values for the mean free path of ionizing photons. Here we report that much -- or potentially all -- of the observed excess likely arises from residual spatial variations in tempera…
The fraction of ionizing photons escaping from galaxies, $f_{esc}$, is at the same time a crucial parameter in modelling reionization and a very poorly known quantity, especially at high redshift. Recent observations are starting to constrain the values of $f_{esc}$ in low-z star-forming galaxies, but the validity of this comparison remains to be verified. Applying at high-z the empirical relation between $f_{esc}$ and the UV slope trends derived from the Low-z Lyman Continuum Survey, we use the DELPHI semi-analytical galaxy formation model to estimate the global ionizing emissivity of high-z …
Neutral diffuse intergalactic gas that existed during the Epoch of Reionization (EoR) suppresses Lyman Alpha (Lya) flux emitted by background galaxies. In this chapter I summarise the increasing observational support for the claim that Lya photons emitted by galaxies at z>6 are suppressed by intervening HI gas. I describe key physical processes that affect Lya transfer during the EoR. I argue that in spite of the uncertainties associated with this complex multiscale problem, the data on Lya emitting galaxies at z=0-6 strongly suggests that the observed reduction in Lya flux from galaxies at z>…
We present here 21 cm predictions from high dynamic range simulations for a range of reionization histories that have been tested against available Lyman-alpha and CMB data. We assess the observability of the predicted spatial 21 cm fluctuations by ongoing and upcoming experiments in the late stages of reionization in the limit in which the hydrogen spin temperature is significantly larger than the CMB temperature. Models consistent with the available Lyman-alpha data and CMB measurement of the Thomson optical depth predict typical values of 10--20 mK^2 for the variance of the 21 cm brightness…
The epoch of reionization (6 < z < 10) marks the period in our universe when the first large galaxies grew to fruition, and began to affect the universe around them. Massive stars, and potentially accreting supermassive black holes, filled the universe with ionizing radiation, burning off the haze of neutral gas that had filled the intergalactic medium (IGM) since recombination (z~1000). The evolution of this process constrains key properties of these earliest luminous sources, thus observationally constraining reionization is a key science goal for the next decade. The measurement of Lyman-al…
Stacking 21-cm Maps around Lyman-$α$ Emitters during Reionization: Prospects for a Cross-correlation Detection with the Hydrogen Epoch of Reionization Array
We present the first results from the ongoing LAGER project (Lyman Alpha Galaxies in the Epoch of Reionization), which is the largest narrowband survey for $z \sim$ 7 galaxies to date. Using a specially built narrowband filter NB964 for the superb large-area Dark-Energy Camera (DECam) on the NOAO/CTIO 4m Blanco telescope, LAGER has collected 34 hours NB964 narrowband imaging data in the 3 deg$^2$ COSMOS field. We have identified 23 Lyman Alpha Emitter (LAE) candidates at $z$ = 6.9 in the central 2-deg$^2$ region, where DECam and public COSMOS multi-band images exist. The resulting luminosity f…
The observed deficit of strongly Lyman-alpha emitting galaxies at z>6.5 is attributed to either increasing neutral hydrogen in the intergalactic medium (IGM) and/or to the evolving galaxy properties. To investigate this, we have performed very deep near-IR spectroscopy of z>7 galaxies using MOSFIRE on the Keck-I Telescope. We measure the Lyman-alpha fraction at z~8 (combined photometric redshift peak at z=7.7) using two methods. First, we derived NLyα/Ntot directly using extensive simulations to correct for incompleteness. Second, we used a Bayesian formalism (introduced by Treu et al. 2012) t…
A number of independent observations suggest that the intergalactic medium was significantly neutral at $z=7$ and that reionization was, perhaps, still in progress at $z=5.7$. The narrowband survey, SILVERRUSH, has mapped over $2,000$ Lyman-$α$ emitters (LAEs) at these redshifts. Previous analyses have assumed that reionization was over by $z=5.7$, but this data may actually sample the final stages of reionization when the last neutral islands were relegated to the cosmic voids. Motivated by these developments, we reexamine LAE void and peak statistics and their ability to constrain reionizati…
The latest measurements of CMB electron scattering optical depth reported by Planck significantly reduces the allowed space of HI reionization models, pointing toward a later ending and/or less extended phase transition than previously believed. Reionization impulsively heats the intergalactic medium (IGM) to $\sim10^4$ K, and owing to long cooling and dynamical times in the diffuse gas, comparable to the Hubble time, memory of reionization heating is retained. Therefore, a late ending reionization has significant implications for the structure of the $z\sim5-6$ Lyman-$α$ (ly$α$) forest. Using…
The Epoch of Reionization (EoR) represents a milestone in the evolution of our Universe. Star-forming galaxies that existed during the EoR likely emitted a significant fraction (~5-40%) of their bolometric luminosity as Lyman Alpha (Lya) line emission. However, neutral intergalactic gas that existed during the EoR was opaque to Lya emission that escaped from galaxies during this epoch, which makes it difficult to observe. The neutral intergalactic medium (IGM) may thus reveal itself by suppressing the Lya flux from background galaxies. Interestingly, a `sudden' reduction in the observed Lya fl…
We investigate Lyman-$α$ transmission spikes at $z > 5$ in synthetic quasar spectra, and discuss their connection to the properties of the intergalactic medium and their ability to constrain reionization models. We use state-of-the-art radiation-hydrodynamic simulations from the Cosmic Reionization On Computers series to predict the number of transmission spikes as a function of redshift, both in the ideal case of infinite spectral resolution and in a realistic observational setting. Transmission spikes are produced in highly-ionized underdense regions located in the vicinity of UV sources. We…
We extend the existing analytical model of reionization by Furlanetto et al. (2004) to include the biasing of reionization sources and additional absorption by Lyman Limit systems. Our model is, by construction, consistent with the observed evolution of the galaxy luminosity function at z<8 and with the observed evolution of Ly-α forest at z<6. We also find that, for a wide range of values for the relative escape fraction that we consider reasonable, and which are consistent with the observational constraints on the relative escape fraction from lower redshifts, our reionization model is consi…
We probe what constraints for the global ionized hydrogen fraction the Void Probability Function (VPF) clustering can give for the Lyman-Alpha Galaxies in the Epoch of Reionization (LAGER) narrowband survey as a function of area. Neutral hydrogen acts like a fog for Lyman-alpha emission, and measuring the drop in the luminosity function of Lyman-$α$ emitters (LAEs) has been used to constrain the ionization fraction in narrowband surveys. However, the clustering of LAEs is independent from the luminosity function's inherent evolution, and can offer additional constraints for reionization under …
We model the high redshift (z > 5) Lyman-$α$ emitting (LAE) galaxy population using the empirical rest-frame equivalent width distribution. We calibrate to the observed luminosity function and angular correlation function at z = 5.7 as measured by the SILVERRUSH survey. This allows us to populate the high-dynamic-range Sherwood simulation suite with LAEs, and to calculate the transmission of their Ly $α$ emission through the inter-galactic medium (IGM). We use this simulated population to explore the effect of the IGM on high-redshift observations of LAEs, and make predictions for the narrowba…
Reionization leads to large spatial fluctuations in the intergalactic temperature that can persist well after its completion. We study the imprints of such fluctuations on the $z\sim5$ Ly$α$ forest flux power spectrum using a set of radiation-hydrodynamic simulations that model different reionization scenarios. We find that large-scale coherent temperature fluctuations bring $\sim20-60\%$ extra power at $k\sim0.002$ s/km, with the largest enhancements in the models where reionization is extended or ends the latest. On smaller scales ($k\gtrsim0.1$ s/km), we find that temperature fluctuations s…
We present the first simulations of the high-redshift Ly$α$ intensity field that account for scattering in the intergalactic medium (IGM). Using a 3D Monte Carlo radiative transfer code, we find that Ly$α$ scattering smooths spatial fluctuations in the Ly$α$ intensity on small scales and that the spatial dependence of this smoothing depends strongly on the mean neutral fraction of the IGM. Our simulations find a strong effect of reionization on $k=0.1-1~{\rm Mpc^{-1}}$, with $P_{\rm Lyα}\propto k^{-1.75}$ for $\bar{x}_{\rm HI} = 0.63$ and $P_{\rm Lyα} \propto k^{-2.2}$ for $\bar{x}_{\rm HI} = …
We calculate the absolute intensity and anisotropies of the Lyman-alpha radiation field present during the epoch of reionization. We consider emission from both galaxies and the intergalactic medium (IGM) and take into account the main contributions to the production of Lyman-alpha photons: recombinations, collisions, continuum emission from galaxies and scattering of Lyman-n photons in the IGM. We find that the emission from individual galaxies dominates over the IGM with a total Lyman-alpha intensity (times frequency) of about (1.43-3.57)x10^{-8} erg s^{-1} cm^{-2} sr^{-1} at a redshift of 7…
Galaxy Proximate Damped Lyman-Alpha Systems and HI Reionization Topology in TECHNICOLOR DAWN
New Mexico State University（新墨西哥州立大学）；Cosmic Dawn Center (DAWN)（宇宙黎明中心（DAWN））；Niels Bohr Institute, University of Copenhagen / DTU-Space Technical University of Denmark（哥本哈根大学尼尔斯·玻尔研究所/丹麦技术大学空间研究所）
The high redshift Lyman-alpha forest, in particular the Gunn-Peterson trough, is the most unambiguous signature of the neutral to ionized transition of the intergalactic medium (IGM) taking place during the Epoch of Reionization (EoR). Recent studies, e.g. Kulkarni et al. (2019a) and Keating et al. (2019), showed that reproducing the observed Lyman-alpha opacities after overlap required a non-monotonous evolution of cosmic emissivity: rising, peaking at z=6, and then decreasing onwards to z=4. Such an evolution is puzzling considering galaxy build-up and the cosmic star formation rate are stil…
We compare the low redshift (z ~ 0.1) Lyman-alpha forest from hydrodynamical simulations with data from the Cosmic Origin Spectrograph (COS). We find tension between the observed number of lines with b-parameters in the range 25-45 km/s and the predictions from simulations that incorporate either vigorous feedback from active galactic nuclei or that exclude feedback altogether. The gas in these simulations is, respectively, either too hot to contribute to the Lyman-alpha absorption or too cold to produce the required line widths. Matching the observed b-parameter distribution therefore require…
We combine high resolution hydrodynamical simulations with an intermediate resolution, dark matter only simulation and an analytical model for the growth of ionized regions to estimate the large scale distribution and redshift evolution of the visibility of Lyman-alpha emission in 6<=z<=8 galaxies. The inhomogeneous distribution of neutral hydrogen during the reionization process results in significant fluctuations in the Lyman-alpha transmissivity on large scales. The transmissivity depends not only on the ionized fraction of the intergalactic medium by volume and the amplitude of the local i…
Identifying low-redshift galaxies that emit Lyman Continuum radiation (LyC leakers) is one of the primary, indirect methods of studying galaxy formation in the epoch of reionization. However, not only has it proved challenging to identify such systems, it also remains uncertain whether the low-redshift LyC leakers are truly "analogues" of the sources that reionized the Universe. Here, we use high-resolution cosmological radiation hydrodynamics simulations to examine whether simulated galaxies in the epoch of reionization share similar emission line properties to observed LyC leakers at $z\sim3…
The time frame in which hydrogen reionization occurred is highly uncertain, but can be constrained by observations of Lyman-alpha (Ly$α$) emission from distant sources. Neutral hydrogen in the intergalactic medium (IGM) attenuates Ly$α$~photons emitted by galaxies. As reionization progressed the IGM opacity decreased, increasing Ly$α$~visibility. The galaxy Ly$α$~luminosity function (LF) is thus a useful tool to constrain the timeline of reionization. In this work, we model the Ly$α$~LF as a function of redshift, $z=5-10$, and average IGM neutral hydrogen fraction, $\overline{x}_\textsc{hi}$. …
The visibility of high-redshift Lyman-alpha emitting galaxies (LAEs) provides important constraints on galaxy formation processes and the Epoch of Reionization (EoR). However, predicting realistic and representative statistics for comparison with observations represents a significant challenge in the context of large-volume cosmological simulations. The THESAN project offers a unique framework for addressing such limitations by combining state-of-the-art galaxy formation (IllustrisTNG) and dust models with the Arepo-RT radiation-magneto-hydrodynamics solver. In this initial study we present Ly…
Recent work has shown that the z~2.5 Lyman-alpha forest on large scales encodes information about the galaxy and quasar populations that keep the intergalactic medium photoionized. We present the first forecasts for constraining the populations with data from current and next-generation surveys. At a minimum the forest should tell us whether galaxies or, conversely, quasars dominate the photon production. The number density and clustering strength of the ionising sources might be estimated to sub-10% precision with a DESI-like survey if degeneracies (e.g., with the photon mean-free-path, small…
The Lyman-alpha forest is the large-scale structure probe for which we appear to have modeling control to the highest wavenumbers. This makes the Lyman-alpha forest of great interest for constraining the warmness/fuzziness of dark matter and the timing of reionization processes. However, the standard statistic, the Lyman-alpha forest power spectrum, is unable to strongly constrain the IGM temperature-density relation, and this inability further limits how well other high wavenumber-sensitive parameters can be constrained. With the aim of breaking these degeneracies, we measure the power spectr…
We examine large-scale fluctuations in the HeII Lyman-alpha forest transmission during and after HeII reionization. We use a simple Monte Carlo model to distribute quasars throughout a large volume and compute the resulting radiation field along one-dimensional skewers. In agreement with previous studies, we find that the rarity of these sources induces order unity fluctuations in the mean optical depth after reionization, even when averaged over large segments (~10-100 Mpc across). We compare our models to existing data along five HeII Lyman-alpha forest lines of sight spanning z~2-3.2. The l…
Faint star-forming galaxies at $z\sim 2-3$ can be used as alternative background sources to probe the Lyman-$α$ forest in addition to quasars, yielding high sightline densities that enable 3D tomographic reconstruction of the foreground absorption field. Here, we present the first data release from the COSMOS Lyman-Alpha Mapping And Mapping Observations (CLAMATO) Survey, which was conducted with the LRIS spectrograph on the Keck-I telescope. Over an observational footprint of 0.157$\mathrm{deg}^2$ within the COSMOS field, we used 240 galaxies and quasars at $2.17<z<3.00$, with a mean comoving …
We present the Technicolor Dawn simulations, a suite of cosmological radiation-hydrodynamic simulations of the first 1.2 billion years. By modeling a spatially-inhomogeneous UVB on-the-fly with 24 frequencies and resolving dark matter halos down to $10^8 M_\odot$ within 12 $h^{-1}$ Mpc volumes, our simulations unify observations of the intergalactic and circumgalactic media, galaxies, and reionization into a common framework. The only empirically-tuned parameter, the fraction $f_{\mathrm{esc,gal}}(z)$ of ionizing photons that escape the interstellar medium, is adjusted to match observations of…
In this paper, we explore the constraints on the reionization history that are provided by current observations of the Lyman-alpha forest and the CMB. Rather than using a particular semi-analytic model, we take the novel approach of parametrizing the ionizing sources with arbitrary functions, and perform likelihood analyses to constrain possible reionization histories. We find model independent conclusions that reionization is likely to be mostly complete by z=8 and that the IGM was 50% ionized at z=9-10. Upcoming low-frequency observations of the redshifted 21 cm line of neutral hydrogen are …
We investigate the cross-correlation between the spatial distribution of Lyman Break Galaxies (LBGs) and the 21cm intensity mapping signal at $z\sim[3-5]$. At these redshifts, galactic feedback is supposed to only marginally affect the matter power spectrum, and the neutral hydrogen distribution is independently constrained by quasar spectra. Using a high resolution N-body simulation, populated with neutral hydrogen a posteriori, we forecast for the expected LBG-21cm cross-spectrum and its error for a 21cm field observed by the Square Kilometre Array (SKA1-LOW and SKA1-MID), combined with a sp…
We present new results from the widest narrow band survey search for Lyman-alpha (Lya) emitters at z=5.7, just after reionization. We survey a total of 7 deg$^2$ spread over the COSMOS, UDS and SA22 fields. We find over 11,000 line emitters, out of which 514 are robust Lya candidates at z=5.7 within a volume of 6.3x10$^6$ Mpc$^3$. Our Lya emitters span a wide range in Lya luminosities, from faint to bright (L$_{\rm Lyα}\sim10^{42.5-44}$ erg s$^{-1}$) and rest-frame equivalent widths (EW$_0$~25-1000 Å) in a single, homogeneous data-set. By combining all our fields we find that the faint end slo…
We present the first Lyman Alpha Emitter (LAE) study that combines: (i) cosmological SPH simulations run using GADGET-2, (ii) radiative transfer simulations (CRASH), and (iii) a previously developed LAE model. This complete LAE model accounts for the intrinsic LAE Lyman Alpha/continuum luminosity, dust enrichment and Lyman Alpha transmission through the intergalactic medium (IGM), to quantify the effects of reionization, dust and velocity fields on the Lyman Alpha and UV Luminosity Functions (LF). We find that a model neglecting dust sorely fails to reproduce either the slope or the magnitude …
Using four different suites of cosmological simulations, we generate synthetic spectra for galaxies with different Lyman continuum escape fractions (fesc) at redshifts z=7-9, in the rest-frame wavelength range relevant for the James Webb Space Telescope (JWST) NIRSpec instrument. By investigating the effects of realistic star formation histories and metallicity distributions on the EW(Hb)-beta diagram (previously proposed as a tool for identifying galaxies with very high fesc), we find that neither of these effects are likely to jeopardize the identification of galaxies with extreme Lyman cont…
It has been recently shown that the astrophysics of reionization can be extracted from the Ly$α$ forest power spectrum by marginalizing the memory of reionization over cosmological information. This impact of cosmic reionization on the Ly$α$ forest power spectrum can survive cosmological time scales because cosmic reionization, which is inhomogeneous, and subsequent shocks from denser regions can heat the gas in low-density regions to $\sim 3\times10^4$ K and compress it to mean-density. Current approach of marginalization over the memory of reionization, however, is not only model-dependent, …
In La Plante et al. (2017), we presented a new suite of hydrodynamic simulations with the aim of accurately capturing the process of helium II reionization. In this paper, we discuss the observational signatures present in the He II Ly$α$ forest. We show that the effective optical depth of the volume $τ_\mathrm{eff}$ is not sufficient for capturing the ionization state of helium II, due to the large variance inherent in sightlines. However, the He II flux PDF can be used to determine the timing of helium II reionization. The amplitude of the one-dimensional flux power spectrum can also determi…
An appealing approach for studying the reionization history of the Universe is to measure the redshift evolution of the Lyman-alpha fraction, the percentage of Lyman-break selected galaxies that emit appreciably in the Ly-alpha line. This fraction is expected to fall-off towards high redshift as the intergalactic medium becomes significantly neutral, and the galaxies' Ly-alpha emission is progressively attenuated. Intriguingly, early measurements with this technique suggest a strong drop in the Ly-alpha fraction near z ~ 7. Previous work concluded that this requires a surprisingly neutral inte…
We study the visibility of the Lyman Alpha (Lya) emission line during the Epoch of Reionization (EoR). Combining galactic outflow models with large-scale semi-numeric simulations of reionization, we quantify the probability distribution function (PDF) of the fraction of Lya photons transmitted through the intergalactic medium (IGM), T_IGM. Our study focusses on galaxies populating dark matter halos with masses of M_halo=1e10 M_sun at z=8.6, which is inspired by the recent reported discovery of a galaxy at z=8.6 with strong Lya line emission. For reasonable model assumptions, we find that winds…
Combining cosmological SPH simulations with a previously developed Lyman Alpha production/transmission model and the Early Reionization Model (ERM, reionization ends at redshift z~7), we obtain Lyman Alpha and UV Luminosity Functions (LFs) for Lyman Alpha Emitters (LAEs) for redshifts between 5.7 and 7.6. Matching model results to observations at z~5.7 requires escape fractions of Lyman Alpha, f_alpha=0.3, and UV (non-ionizing) continuum photons, f_c=0.22, corresponding to a color excess, E(B-V)=0.15. We find that (i) f_c increases towards higher redshifts, due the decreasing mean dust content…
Due to the large cross section of Ly$α$ photons with hydrogen, Lyman Alpha Emitters (LAEs) are sensitive to the presence of neutral hydrogen in the intergalactic medium (IGM) during the Epoch of Reionization (EoR): the period in the Universe's history where neutral hydrogen in the IGM is ionized. The correlation of the ionized regions in the IGM with respect to the underlying intrinsic LAEs has a pronounced effect on the number of observed LAEs and their apparent clustering. As a result, observations of LAEs during the EoR can be used as a probe of the EoR morphology. Here we build on previous…
We build a physical model for high-redshift Lyman Alpha emitters (LAEs) by coupling state of the art cosmological simulations (GADGET-2) with a dust model and a radiative transfer code (pCRASH). We post-process the cosmological simulation with pCRASH using five different values of the escape fraction of hydrogen ionizing photons (f_esc=0.05,0.25,0.5,0.75,0.95) until reionization is complete, i.e. the average neutral hydrogen fraction drops to <X_HI>~10^-4. Then, the only free-parameter left to match model results to the observed Lya and UV luminosity functions of LAEs at z~6.6 is the relative …
The \lya forest at high redshifts is a powerful probe of reionization. Modeling and observing this imprint comes with significant technical challenges: inhomogeneous reionization must be taken into account while simultaneously being able to resolve the web-like small-scale structure prior to reionization. In this work we quantify the impact of inhomogeneous reionization on the \lya forest at lower redshifts ($2 < z < 4$), where upcoming surveys such as DESI will enable precision measurements of the flux power spectrum. We use both small box simulations capable of handling the small-scale struc…
Lyman-limit absorption systems can play many important roles during and after cosmological reionization. Unfortunately, due to the prohibitively large dynamic range required, it is impossible to self-consistently include these systems in cosmological simulations. Using fast and versatile semi-numeric simulations, we systematically explore the spatial distribution of absorption systems during and following reionization. We self-calibrate the resulting number of absorbers to the mean free path (mfp) of the ionizing ultraviolet background (UVB), and present results at a given mfp and neutral hydr…
