In the Cograph Deletion (resp., Cograph Editing) problem the input is a graph $G$ and an integer $k$, and the goal is to decide whether there is a set of edges of size at most $k$ whose removal from $G$ (resp., removal and addition to $G$) results in a graph that does not contain an induced path with four vertices. In this paper we give algorithms for Cograph Deletion and Cograph Editing whose running times are $O^*(2.303^k)$ and $O^*(4.329^k)$, respectively.
We design two incremental algorithms for computing an inclusion-minimal completion of an arbitrary graph into a cograph. The first one is able to do so while providing an additional property which is crucial in practice to obtain inclusion-minimal completions using as few edges as possible : it is able to compute a minimum-cardinality completion of the neighbourhood of the new vertex introduced at each incremental step. It runs in $O(n+m')$ time, where $m'$ is the number of edges in the completed graph. This matches the complexity of the algorithm in [Lokshtanov, Mancini and Papadopoulos 2010]…
Many fixed-parameter tractable algorithms using a bounded search tree have been repeatedly improved, often by describing a larger number of branching rules involving an increasingly complex case analysis. We introduce a novel and general search strategy that branches on the forbidden subgraphs of a graph class relaxation. By using the class of $P_4$-sparse graphs as the relaxed graph class, we obtain efficient bounded search tree algorithms for several parameterized deletion problems. We give the first non-trivial bounded search tree algorithms for the cograph edge-deletion problem and the tri…
We provide a $O(k^2 \mathrm{log} k)$ vertex kernel for cograph edge editing. This improves a cubic kernel found by Guillemot, Havet, Paul and Perez [1] which involved four reduction rules. We generalize one of their rules, based on packing of induced paths of length four, by introducing t-modules, which are modules up to t edge modifications. The key fact is that large t-modules cannot be edited more than t times, and this allows to obtain a near quadratic kernel. The extra $\mathrm{log} k$ factor seems tricky to remove as it is necessary in the combinatorial lemma on trees which is central in…
Reciprocal best match graphs (RBMGs) are vertex colored graphs whose vertices represent genes and the colors the species where the genes reside. Edges identify pairs of genes that are most closely related with respect to an underlying evolutionary tree. In practical applications this tree is unknown and the edges of the RBMGs are inferred by quantifying sequence similarity. Due to noise in the data, these empirically determined graphs in general violate the condition of being a ``biologically feasible'' RBMG. Therefore, it is of practical interest in computational biology to correct the initia…
Given a graph G = (V,E) and an integer k, an edge modification problem for a graph property P consists in deciding whether there exists a set of edges F of size at most k such that the graph H = (V,E \vartriangle F) satisfies the property P. In the P edge-completion problem, the set F of edges is constrained to be disjoint from E; in the P edge-deletion problem, F is a subset of E; no constraint is imposed on F in the P edge-edition problem. A number of optimization problems can be expressed in terms of graph modification problems which have been extensively studied in the context of parameter…
In this paper, we revisit the split decomposition of graphs and give new combinatorial and algorithmic results for the class of totally decomposable graphs, also known as the distance hereditary graphs, and for two non-trivial subclasses, namely the cographs and the 3-leaf power graphs. Precisely, we give strutural and incremental characterizations, leading to optimal fully-dynamic recognition algorithms for vertex and edge modifications, for each of these classes. These results rely on a new framework to represent the split decomposition, namely the graph-labelled trees, which also captures t…
Many computational problems admit fast algorithms on special inputs, however, the required properties might be quite restrictive. E.g., many graph problems can be solved much faster on interval or cographs, or on graphs of small modular-width or small tree-width, than on general graphs. One challenge is to attain the greatest generality of such results, i.e., being applicable to less restrictive input classes, without losing much in terms of running time. Building on the use of algebraic expressions we present a clean and robust way of combining such homogeneous structure into more complex het…
PPSZ is the fastest known algorithm for (d,k)-CSP problems, for most values of d and k. It goes through the variables in random order and sets each variable randomly to one of the d colors, excluding those colors that can be ruled out by looking at few constraints at a time. We propose and analyze a modification of PPSZ: whenever all but 2 colors can be ruled out for some variable, immediately set that variable randomly to one of the remaining colors. We show that our new "impatient PPSZ" outperforms PPSZ exponentially for all k and all d >= 3 on formulas with a unique satisfying assignment.
We present two new deterministic algorithms for the Feedback Vertex Set problem parameterized by the solution size. We begin with a simple algorithm, which runs in O*((2 + ϕ)^k) time, where ϕ< 1.619 is the golden ratio. It already surpasses the previously fastest O*((1+2sqrt(2))^k)-time deterministic algorithm due to Cao et al. [SWAT 2010]. In our developments we follow the approach of Cao et al., however, thanks to a new reduction rule, we obtain not only better dependency on the parameter in the running time, but also a solution with simple analysis and only a single branching rule. Then, we…
We improve the running times of $O(1)$-approximation algorithms for the set cover problem in geometric settings, specifically, covering points by disks in the plane, or covering points by halfspaces in three dimensions. In the unweighted case, Agarwal and Pan [SoCG 2014] gave a randomized $O(n\log^4 n)$-time, $O(1)$-approximation algorithm, by using variants of the multiplicative weight update (MWU) method combined with geometric data structures. We simplify the data structure requirement in one of their methods and obtain a deterministic $O(n\log^3 n\log\log n)$-time algorithm. With further n…
Property testing algorithms are highly efficient algorithms, that come with probabilistic accuracy guarantees. For a property P, the goal is to distinguish inputs that have P from those that are far from having P with high probability correctly, by querying only a small number of local parts of the input. In property testing on graphs, the distance is measured by the number of edge modifications (additions or deletions), that are necessary to transform a graph into one with property P. Much research has focussed on the query complexity of such algorithms, i. e. the number of queries the algori…
In the fundamental Maximum Matching problem the task is to find a maximum cardinality set of pairwise disjoint edges in a given undirected graph. The fastest algorithm for this problem, due to Micali and Vazirani, runs in time $\mathcal{O}(\sqrt{n}m)$ and stands unbeaten since 1980. It is complemented by faster, often linear-time, algorithms for various special graph classes. Moreover, there are fast parameterized algorithms, e.g., time $\mathcal{O}(km\log n)$ relative to tree-width $k$, which outperform $\mathcal{O}(\sqrt{n}m)$ when the parameter is sufficiently small. We show that the Micali…
We give an $O(k^3 n \log n \min(k,\log^2 n) \log^2(nC))$-time algorithm for computing maximum integer flows in planar graphs with integer arc {\em and vertex} capacities bounded by $C$, and $k$ sources and sinks. This improves by a factor of $\max(k^2,k\log^2 n)$ over the fastest algorithm previously known for this problem [Wang, SODA 2019]. The speedup is obtained by two independent ideas. First we replace an iterative procedure of Wang that uses $O(k)$ invocations of an $O(k^3 n \log^3 n)$-time algorithm for maximum flow algorithm in a planar graph with $k$ apices [Borradaile et al., FOCS 20…
We make several advances broadly related to the maintenance of electrical flows in weighted graphs undergoing dynamic resistance updates, including: 1. More efficient dynamic spectral vertex sparsification, achieved by faster length estimation of random walks in weighted graphs using Morris counters [Morris 1978, Nelson-Yu 2020]. 2. A direct reduction from detecting edges with large energy in dynamic electric flows to dynamic spectral vertex sparsifiers. 3. A procedure for turning algorithms for estimating a sequence of vectors under updates from an oblivious adversary to one that tolerates ad…
We consider the Online Boolean Matrix-Vector Multiplication (OMV) problem studied by Henzinger et al. [STOC'15]: given an $n \times n$ Boolean matrix $M$, we receive $n$ Boolean vectors $v_1,\ldots,v_n$ one at a time, and are required to output $M v_i$ (over the Boolean semiring) before seeing the vector $v_{i+1}$, for all $i$. Previous known algorithms for this problem are combinatorial, running in $O(n^3/\log^2 n)$ time. Henzinger et al. conjecture there is no $O(n^{3-\varepsilon})$ time algorithm for OMV, for all $\varepsilon > 0$; their OMV conjecture is shown to imply strong hardness resu…
In this paper we provide faster algorithms for approximately solving discounted Markov Decision Processes in multiple parameter regimes. Given a discounted Markov Decision Process (DMDP) with $|S|$ states, $|A|$ actions, discount factor $γ\in(0,1)$, and rewards in the range $[-M, M]$, we show how to compute an $ε$-optimal policy, with probability $1 - δ$ in time \[ \tilde{O}\left( \left(|S|^2 |A| + \frac{|S| |A|}{(1 - γ)^3} \right) \log\left( \frac{M}ε \right) \log\left( \frac{1}δ \right) \right) ~ . \] This contribution reflects the first nearly linear time, nearly linearly convergent algorit…
The pigeonhole principle states that if $n$ items are contained in $m$ boxes, then at least one box has no more than $n / m$ items. It is utilized to solve many data management problems, especially for thresholded similarity searches. Despite many pigeonhole principle-based solutions proposed in the last few decades, the condition stated by the principle is weak. It only constrains the number of items in a single box. By organizing the boxes in a ring, we propose a new principle, called the pigeonring principle, which constrains the number of items in multiple boxes and yields stronger conditi…
