Purpose: The purpose of this study is to investigate the robustness of a commonly-used convolutional neural network for image segmentation with respect to visually-subtle adversarial perturbations, and suggest new methods to make these networks more robust to such perturbations. Materials and Methods: In this retrospective study, the accuracy of brain tumor segmentation was studied in subjects with low- and high-grade gliomas. A three-dimensional UNet model was implemented to segment four different MR series (T1-weighted, post-contrast T1-weighted, T2- weighted, and T2-weighted FLAIR) into four pixelwise labels (Gd-enhancing tumor, peritumoral edema, necrotic and non-enhancing tumor, and background). We developed attack strategies based on the Fast Gradient Sign Method (FGSM), iterative FGSM (i-FGSM), and targeted iterative FGSM (ti-FGSM) to produce effective attacks. Additionally, we explored the effectiveness of distillation and adversarial training via data augmentation to counteract adversarial attacks. Robustness was measured by comparing the Dice coefficient for each attack method using Wilcoxon signed-rank tests. Results: Attacks based on FGSM, i-FGSM, and ti-FGSM were effective in significantly reducing the quality of image segmentation with reductions in Dice coefficient by up to 65%. For attack defenses, distillation performed significantly better than adversarial training approaches. However, all defense approaches performed worse compared to unperturbed test images. Conclusion: Segmentation networks can be adversely affected by targeted attacks that introduce visually minor (and potentially undetectable) modifications to existing images. With an increasing interest in applying deep learning techniques to medical imaging data, it is important to quantify the ramifications of adversarial inputs (either intentional or unintentional).
Autonomous vehicles utilize urban scene segmentation to understand the real world like a human and react accordingly. Semantic segmentation of normal scenes has experienced a remarkable rise in accuracy on conventional benchmarks. However, a significant portion of real-life accidents features abnormal scenes, such as those with object deformations, overturns, and unexpected traffic behaviors. Since even small mis-segmentation of driving scenes can lead to serious threats to human lives, the robustness of such models in accident scenarios is an extremely important factor in ensuring safety of i…
NRSeg: Noise-Resilient Learning for BEV Semantic Segmentation via Driving World Models
School of Artificial Intelligence and Robotics and the National Engineering Research Center of Robot Visual Perception and Control Technology, Hunan University（人工智能与机器人学院和机器人视觉感知与控制技术国家工程研究中心，湖南大学）
University of Leicester（莱斯特大学）；University of Lancaster（兰卡斯特大学）；Queen Mary, University of London（伦敦大学玛丽女王学院）；Xidian University（西安电子科技大学）；Bielefeld University（比勒费尔德大学）
Brain tumor segmentation is one of the most challenging problems in medical image analysis. The goal of brain tumor segmentation is to generate accurate delineation of brain tumor regions. In recent years, deep learning methods have shown promising performance in solving various computer vision problems, such as image classification, object detection and semantic segmentation. A number of deep learning based methods have been applied to brain tumor segmentation and achieved promising results. Considering the remarkable breakthroughs made by state-of-the-art technologies, we use this survey to …
The single image super-resolution task is one of the most examined inverse problems in the past decade. In the recent years, Deep Neural Networks (DNNs) have shown superior performance over alternative methods when the acquisition process uses a fixed known downsampling kernel-typically a bicubic kernel. However, several recent works have shown that in practical scenarios, where the test data mismatch the training data (e.g. when the downsampling kernel is not the bicubic kernel or is not available at training), the leading DNN methods suffer from a huge performance drop. Inspired by the liter…
University College London（伦敦大学学院）；NAAMII；Redev Technology（Redev科技）
We present our novel deep multi-task learning method for medical image segmentation. Existing multi-task methods demand ground truth annotations for both the primary and auxiliary tasks. Contrary to it, we propose to generate the pseudo-labels of an auxiliary task in an unsupervised manner. To generate the pseudo-labels, we leverage Histogram of Oriented Gradients (HOGs), one of the most widely used and powerful hand-crafted features for detection. Together with the ground truth semantic segmentation masks for the primary task and pseudo-labels for the auxiliary task, we learn the parameters o…
Muroran Institute of Technology（室兰工业大学）；Niigata University of Healthcare and Welfare（新泻医疗福祉大学）
Nuclear segmentation, classification and quantification within Haematoxylin & Eosin stained histology images enables the extraction of interpretable cell-based features that can be used in downstream explainable models in computational pathology. The Colon Nuclei Identification and Counting (CoNIC) Challenge is held to help drive forward research and innovation for automatic nuclei recognition in computational pathology. This report describes our proposed method submitted to the CoNIC challenge. Our method employs a multi-task learning framework, which performs a panoptic segmentation task and…
Medical University of Vienna（维也纳医科大学）；Technical University Graz（格拉茨工业大学）；Complexity Science Hub（复杂性科学中心）
Recently, pruning deep neural networks (DNNs) has received a lot of attention for improving accuracy and generalization power, reducing network size, and increasing inference speed on specialized hardwares. Although pruning was mainly tested on computer vision tasks, its application in the context of medical image analysis has hardly been explored. This work investigates the impact of well-known pruning techniques, namely layer-wise and network-wide magnitude pruning, on the nuclei instance segmentation performance in histological images. Our utilized instance segmentation model consists of tw…
Shaanxi University of Science and Technology（陕西科技大学）；Lanzhou Jiaotong University（兰州交通大学）；Brunel University London（伦敦布鲁内尔大学）
Deep learning has been widely used for medical image segmentation and a large number of papers has been presented recording the success of deep learning in the field. In this paper, we present a comprehensive thematic survey on medical image segmentation using deep learning techniques. This paper makes two original contributions. Firstly, compared to traditional surveys that directly divide literatures of deep learning on medical image segmentation into many groups and introduce literatures in detail for each group, we classify currently popular literatures according to a multi-level structure…
The extent to which the arbitrarily selected L2 regularization hyperparameter value affects the outcome of semantic segmentation with deep learning is demonstrated. Demonstrations rely on training U-net on small LGE-MRI datasets using the arbitrarily selected L2 regularization values. The remaining hyperparameters are to be manually adjusted or tuned only when 10 % of all epochs are reached before the training validation accuracy reaches 90%. Semantic segmentation with deep learning outcomes are objectively and subjectively evaluated against the manual ground truth segmentation.
Segmentation has been a major task in neuroimaging. A large number of automated methods have been developed for segmenting healthy and diseased brain tissues. In recent years, deep learning techniques have attracted a lot of attention as a result of their high accuracy in different segmentation problems. We present a new deep learning based segmentation method, DeepMRSeg, that can be applied in a generic way to a variety of segmentation tasks. The proposed architecture combines recent advances in the field of biomedical image segmentation and computer vision. We use a modified UNet architectur…
In this paper we present a new approach for feature fusion between RGB and LWIR Thermal images for the task of semantic segmentation for driving perception. We propose DooDLeNet, a double DeepLab architecture with specialized encoder-decoders for thermal and color modalities and a shared decoder for final segmentation. We combine two strategies for feature fusion: confidence weighting and correlation weighting. We report state-of-the-art mean IoU results on the MF dataset.
Emory University（埃默里大学）；Winship Cancer Institute（温希普癌症研究所）
This paper presents a review of deep learning (DL) in multi-organ segmentation. We summarized the latest DL-based methods for medical image segmentation and applications. These methods were classified into six categories according to their network design. For each category, we listed the surveyed works, highlighted important contributions and identified specific challenges. Following the detailed review of each category, we briefly discussed its achievements, shortcomings and future potentials. We provided a comprehensive comparison among DL-based methods for thoracic and head & neck multiorga…
Current advances in deep learning is leading to human-level accuracy in computer vision tasks such as object classification, localization, semantic segmentation, and instance segmentation. In this paper, we describe a new deep convolutional neural network architecture called Vec2Instance for instance segmentation. Vec2Instance provides a framework for parametrization of instances, allowing convolutional neural networks to efficiently estimate the complex shapes of instances around their centroids. We demonstrate the feasibility of the proposed architecture with respect to instance segmentation…
National Taiwan University（台湾大学）；Santa Clara University（圣克拉拉大学）；QNAP Systems, Inc（威联通科技股份有限公司）；Taipei Hospital（台北医院）；National Taiwan University Hospital（台湾大学附属医院）
Semantic segmentation of medical images with deep learning models is rapidly developed. In this study, we benchmarked state-of-the-art deep learning segmentation algorithms on our clinical stereotactic radiosurgery dataset, demonstrating the strengths and weaknesses of these algorithms in a fairly practical scenario. In particular, we compared the model performances with respect to their sampling method, model architecture, and the choice of loss functions, identifying the suitable settings for their applications and shedding light on the possible improvements.
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes coronavirus disease 2019 (COVID-19). Imaging tests such as chest X-ray (CXR) and computed tomography (CT) can provide useful information to clinical staff for facilitating a diagnosis of COVID-19 in a more efficient and comprehensive manner. As a breakthrough of artificial intelligence (AI), deep learning has been applied to perform COVID-19 infection region segmentation and disease classification by analyzing CXR and CT data. However, prediction uncertainty of deep learning models for these tasks, which is very important to s…
National Institutes of Health Clinical Center（美国国立卫生研究院临床中心）
This paper reports Deep LOGISMOS approach to 3D tumor segmentation by incorporating boundary information derived from deep contextual learning to LOGISMOS - layered optimal graph image segmentation of multiple objects and surfaces. Accurate and reliable tumor segmentation is essential to tumor growth analysis and treatment selection. A fully convolutional network (FCN), UNet, is first trained using three adjacent 2D patches centered at the tumor, providing contextual UNet segmentation and probability map for each 2D patch. The UNet segmentation is then refined by Gaussian Mixture Model (GMM) a…
Isfahan University of Technology（伊斯法罕理工大学）；University of Michigan（密歇根大学）
Ultrasound imaging is a standard examination during pregnancy that can be used for measuring specific biometric parameters towards prenatal diagnosis and estimating gestational age. Fetal head circumference (HC) is one of the significant factors to determine the fetus growth and health. In this paper, a multi-task deep convolutional neural network is proposed for automatic segmentation and estimation of HC ellipse by minimizing a compound cost function composed of segmentation dice score and MSE of ellipse parameters. Experimental results on fetus ultrasound dataset in different trimesters of …
Semantic segmentation is a fundamental research in remote sensing image processing. Because of the complex maritime environment, the sea-land segmentation is a challenging task. Although the neural network has achieved excellent performance in semantic segmentation in the last years, there are a few of works using CNN for sea-land segmentation and the results could be further improved. This paper proposes a novel deep convolution neural network named DeepUNet. Like the U-Net, its structure has a contracting path and an expansive path to get high resolution output. But differently, the DeepUNet…
In this paper, we propose a novel medical image segmentation using iterative deep learning framework. We have combined an iterative learning approach and an encoder-decoder network to improve segmentation results, which enables to precisely localize the regions of interest (ROIs) including complex shapes or detailed textures of medical images in an iterative manner. The proposed iterative deep convolutional encoder-decoder network consists of two main paths: convolutional encoder path and convolutional decoder path with iterative learning. Experimental results show that the proposed iterative …
Class-agnostic object proposal generation is an important first step in many object detection pipelines. However, object proposals of modern systems are rather inaccurate in terms of segmentation and only roughly adhere to object boundaries. Since typical refinement steps are usually not applicable to thousands of proposals, we propose a superpixel-based refinement system for object proposal generation systems. Utilizing precise superpixels and superpixel pooling on deep features, we refine initial coarse proposals in an end-to-end learned system. Furthermore, we propose a novel DeepFH segment…
Deep learning has been revolutionary for computer vision and semantic segmentation in particular, with Bayesian Deep Learning (BDL) used to obtain uncertainty maps from deep models when predicting semantic classes. This information is critical when using semantic segmentation for autonomous driving for example. Standard semantic segmentation systems have well-established evaluation metrics. However, with BDL's rising popularity in computer vision we require new metrics to evaluate whether a BDL method produces better uncertainty estimates than another method. In this work we propose three such…
Applying machine learning technologies, especially deep learning, into medical image segmentation is being widely studied because of its state-of-the-art performance and results. It can be a key step to provide a reliable basis for clinical diagnosis, such as 3D reconstruction of human tissues, image-guided interventions, image analyzing and visualization. In this review article, deep-learning-based methods for ultrasound image segmentation are categorized into six main groups according to their architectures and training at first. Secondly, for each group, several current representative algor…
We propose a new method for semantic instance segmentation, by first computing how likely two pixels are to belong to the same object, and then by grouping similar pixels together. Our similarity metric is based on a deep, fully convolutional embedding model. Our grouping method is based on selecting all points that are sufficiently similar to a set of "seed points", chosen from a deep, fully convolutional scoring model. We show competitive results on the Pascal VOC instance segmentation benchmark.
Université de Rouen Normandie（鲁昂诺曼底大学）；INSA Rouen（鲁昂应用科学学院）
Multi-modality is widely used in medical imaging, because it can provide multiinformation about a target (tumor, organ or tissue). Segmentation using multimodality consists of fusing multi-information to improve the segmentation. Recently, deep learning-based approaches have presented the state-of-the-art performance in image classification, segmentation, object detection and tracking tasks. Due to their self-learning and generalization ability over large amounts of data, deep learning recently has also gained great interest in multi-modal medical image segmentation. In this paper, we give an …
Deep learning techniques have successfully been employed in numerous computer vision tasks including image segmentation. The techniques have also been applied to medical image segmentation, one of the most critical tasks in computer-aided diagnosis. Compared with natural images, the medical image is a gray-scale image with low-contrast (even with some invisible parts). Because some organs have similar intensity and texture with neighboring organs, there is usually a need to refine automatic segmentation results. In this paper, we propose an interactive deep refinement framework to improve the …
The rapid development of deep learning has made a great progress in image segmentation, one of the fundamental tasks of computer vision. However, the current segmentation algorithms mostly rely on the availability of pixel-level annotations, which are often expensive, tedious, and laborious. To alleviate this burden, the past years have witnessed an increasing attention in building label-efficient, deep-learning-based image segmentation algorithms. This paper offers a comprehensive review on label-efficient image segmentation methods. To this end, we first develop a taxonomy to organize these …
While significant attention has been recently focused on designing supervised deep semantic segmentation algorithms for vision tasks, there are many domains in which sufficient supervised pixel-level labels are difficult to obtain. In this paper, we revisit the problem of purely unsupervised image segmentation and propose a novel deep architecture for this problem. We borrow recent ideas from supervised semantic segmentation methods, in particular by concatenating two fully convolutional networks together into an autoencoder--one for encoding and one for decoding. The encoding layer produces a…
Skolkovo Institute of Science and Technology (Skoltech)（斯科尔科沃科学技术学院）；Yandex（Yandex（俄罗斯搜索引擎公司））；Samsung AI Center（三星人工智能中心）
We propose a new and, arguably, a very simple reduction of instance segmentation to semantic segmentation. This reduction allows to train feed-forward non-recurrent deep instance segmentation systems in an end-to-end fashion using architectures that have been proposed for semantic segmentation. Our approach proceeds by introducing a fixed number of labels (colors) and then dynamically assigning object instances to those labels during training (coloring). A standard semantic segmentation objective is then used to train a network that can color previously unseen images. At test time, individual …
University of Notre Dame（圣母大学）；Research and Academic Computer Network（研究与学术计算机网络）
This paper offers three new, open-source, deep learning-based iris segmentation methods, and the methodology how to use irregular segmentation masks in a conventional Gabor-wavelet-based iris recognition. To train and validate the methods, we used a wide spectrum of iris images acquired by different teams and different sensors and offered publicly, including data taken from CASIA-Iris-Interval-v4, BioSec, ND-Iris-0405, UBIRIS, Warsaw-BioBase-Post-Mortem-Iris v2.0 (post-mortem iris images), and ND-TWINS-2009-2010 (iris images acquired from identical twins). This varied training data should incr…
Traditional Scene Understanding problems such as Object Detection and Semantic Segmentation have made breakthroughs in recent years due to the adoption of deep learning. However, the former task is not able to localise objects at a pixel level, and the latter task has no notion of different instances of objects of the same class. We focus on the task of Instance Segmentation which recognises and localises objects down to a pixel level. Our model is based on a deep neural network trained for semantic segmentation. This network incorporates a Conditional Random Field with end-to-end trainable hi…
We propose a novel deep neural network architecture for semi-supervised semantic segmentation using heterogeneous annotations. Contrary to existing approaches posing semantic segmentation as a single task of region-based classification, our algorithm decouples classification and segmentation, and learns a separate network for each task. In this architecture, labels associated with an image are identified by classification network, and binary segmentation is subsequently performed for each identified label in segmentation network. The decoupled architecture enables us to learn classification an…
In deep networks, the lost data details significantly degrade the performances of image segmentation. In this paper, we propose to apply Discrete Wavelet Transform (DWT) to extract the data details during feature map down-sampling, and adopt Inverse DWT (IDWT) with the extracted details during the up-sampling to recover the details. We firstly transform DWT/IDWT as general network layers, which are applicable to 1D/2D/3D data and various wavelets like Haar, Cohen, and Daubechies, etc. Then, we design wavelet integrated deep networks for image segmentation (WaveSNets) based on various architect…
University of Science and Technology of China（中国科学技术大学）；Institute of Artificial Intelligence, Hefei Comprehensive National Science Center（合肥综合性国家科学中心人工智能研究院）
Mitochondria instance segmentation from electron microscopy (EM) images has seen notable progress since the introduction of deep learning methods. In this paper, we propose two advanced deep networks, named Res-UNet-R and Res-UNet-H, for 3D mitochondria instance segmentation from Rat and Human samples. Specifically, we design a simple yet effective anisotropic convolution block and deploy a multi-scale training strategy, which together boost the segmentation performance. Moreover, we enhance the generalizability of the trained models on the test set by adding a denoising operation as pre-proce…
We propose Clustering Mask Transformer (CMT-DeepLab), a transformer-based framework for panoptic segmentation designed around clustering. It rethinks the existing transformer architectures used in segmentation and detection; CMT-DeepLab considers the object queries as cluster centers, which fill the role of grouping the pixels when applied to segmentation. The clustering is computed with an alternating procedure, by first assigning pixels to the clusters by their feature affinity, and then updating the cluster centers and pixel features. Together, these operations comprise the Clustering Mask …
Ulsan National Institute of Science and Technology (UNIST)（蔚山科学技术院）；Harvard University（哈佛大学）
Electron microscopic connectomics is an ambitious research direction with the goal of studying comprehensive brain connectivity maps by using high-throughput, nano-scale microscopy. One of the main challenges in connectomics research is developing scalable image analysis algorithms that require minimal user intervention. Recently, deep learning has drawn much attention in computer vision because of its exceptional performance in image classification tasks. For this reason, its application to connectomic analyses holds great promise, as well. In this paper, we introduce a novel deep neural netw…
College of Computer Science and Software Engineering, Shenzhen University（深圳大学计算机与软件学院）；Institute of Computer Mathematics and Information Technologies, Kazan Federal University（喀山联邦大学计算机数学与信息技术研究所）
Image segmentation, one of the most critical vision tasks, has been studied for many years. Most of the early algorithms are unsupervised methods, which use hand-crafted features to divide the image into many regions. Recently, owing to the great success of deep learning technology, CNNs based methods show superior performance in image segmentation. However, these methods rely on a large number of human annotations, which are expensive to collect. In this paper, we propose a deep unsupervised method for image segmentation, which contains the following two stages. First, a Superpixelwise Autoen…
Recently deep residual learning with residual units for training very deep neural networks advanced the state-of-the-art performance on 2D image recognition tasks, e.g., object detection and segmentation. However, how to fully leverage contextual representations for recognition tasks from volumetric data has not been well studied, especially in the field of medical image computing, where a majority of image modalities are in volumetric format. In this paper we explore the deep residual learning on the task of volumetric brain segmentation. There are at least two main contributions in our work.…
We propose a novel weakly-supervised semantic segmentation algorithm based on Deep Convolutional Neural Network (DCNN). Contrary to existing weakly-supervised approaches, our algorithm exploits auxiliary segmentation annotations available for different categories to guide segmentations on images with only image-level class labels. To make the segmentation knowledge transferrable across categories, we design a decoupled encoder-decoder architecture with attention model. In this architecture, the model generates spatial highlights of each category presented in an image using an attention model, …
Medical Image Segmentation with Belief Function Theory and Deep Learning
University of Technology of Compiègne（贡比涅技术大学）；Heudiasyc Laboratory（欧洲计算机科学与自动化研究院）；University of Paris-Saclay（巴黎萨克雷大学）；University of Artois（阿图瓦大学）；ENSMM School（国立高等机械与微技术学院）；University of Rouen（鲁昂大学）
Trinity College Dublin（都柏林大学三一学院）；Nanyang Technological University (NTU)（南洋理工大学）；National University of Singapore (NUS)（新加坡国立大学）
Different empirical models have been developed for cloud detection. There is a growing interest in using the ground-based sky/cloud images for this purpose. Several methods exist that perform binary segmentation of clouds. In this paper, we propose to use a deep learning architecture (U-Net) to perform multi-label sky/cloud image segmentation. The proposed approach outperforms recent literature by a large margin.
In this work, we introduce Panoptic-DeepLab, a simple, strong, and fast system for panoptic segmentation, aiming to establish a solid baseline for bottom-up methods that can achieve comparable performance of two-stage methods while yielding fast inference speed. In particular, Panoptic-DeepLab adopts the dual-ASPP and dual-decoder structures specific to semantic, and instance segmentation, respectively. The semantic segmentation branch is the same as the typical design of any semantic segmentation model (e.g., DeepLab), while the instance segmentation branch is class-agnostic, involving a simp…
In the literature, many fusion techniques are registered for the segmentation of images, but they primarily focus on observed output or belief score or probability score of the output classes. In the present work, we have utilized inter source statistical dependency among different classifiers for ensembling of different deep learning techniques for semantic segmentation of images. For this purpose, in the present work, a class-wise Copula-based ensembling method is newly proposed for solving the multi-class segmentation problem. Experimentally, it is observed that the performance has improved…
We propose a 2D Encoder-Decoder based deep learning architecture for semantic segmentation, that incorporates anatomical priors by imitating the encoder component of an autoencoder in latent space. The autoencoder is additionally enhanced by means of hierarchical features, extracted by an U-Net module. Our suggested architecture is trained in an end-to-end manner and is evaluated on the example of pelvic bone segmentation in MRI. A comparison to the standard U-Net architecture shows promising improvements.
Troy High School（特洛伊高中）；Harvard College（哈佛学院）；Beaumont Health（博蒙特健康）
As melanoma diagnoses increase across the US, automated efforts to identify malignant lesions become increasingly of interest to the research community. Segmentation of dermoscopic images is the first step in this process, thus accuracy is crucial. Although techniques utilizing convolutional neural networks have been used in the past for lesion segmentation, we present a solution employing the recently published DeepLab 3, an atrous convolution method for image segmentation. Although the results produced by this run are not ideal, with a mean Jaccard index of 0.498, we believe that with furthe…
Accurate estimation of the positions and shapes of microscale objects is crucial for automated imaging-guided manipulation using a non-contact technique such as optical tweezers. Perception methods that use traditional computer vision algorithms tend to fail when the manipulation environments are crowded. In this paper, we present a deep learning model for semantic segmentation of the images representing such environments. Our model successfully performs segmentation with a high mean Intersection Over Union score of 0.91.
Imperial College London（伦敦帝国学院）；City, University of London（伦敦城市大学）；University of Birmingham（伯明翰大学）
Deep learning has become the most widely used approach for cardiac image segmentation in recent years. In this paper, we provide a review of over 100 cardiac image segmentation papers using deep learning, which covers common imaging modalities including magnetic resonance imaging (MRI), computed tomography (CT), and ultrasound (US) and major anatomical structures of interest (ventricles, atria and vessels). In addition, a summary of publicly available cardiac image datasets and code repositories are included to provide a base for encouraging reproducible research. Finally, we discuss the chall…
School of Biomedical Engineering & Imaging Sciences, King’s College London（伦敦国王学院生物医学工程与影像科学学院）
We present a novel method to explicitly incorporate topological prior knowledge into deep learning based segmentation, which is, to our knowledge, the first work to do so. Our method uses the concept of persistent homology, a tool from topological data analysis, to capture high-level topological characteristics of segmentation results in a way which is differentiable with respect to the pixelwise probability of being assigned to a given class. The topological prior knowledge consists of the sequence of desired Betti numbers of the segmentation. As a proof-of-concept we demonstrate our approach…
Instance segmentation in 3D images is a fundamental task in biomedical image analysis. While deep learning models often work well for 2D instance segmentation, 3D instance segmentation still faces critical challenges, such as insufficient training data due to various annotation difficulties in 3D biomedical images. Common 3D annotation methods (e.g., full voxel annotation) incur high workloads and costs for labeling enough instances for training deep learning 3D instance segmentation models. In this paper, we propose a new weak annotation approach for training a fast deep learning 3D instance …
Many research works focus on leveraging the complementary geometric information of indoor depth sensors in vision tasks performed by deep convolutional neural networks, notably semantic segmentation. These works deal with a specific vision task known as "RGB-D Indoor Semantic Segmentation". The challenges and resulting solutions of this task differ from its standard RGB counterpart. This results in a new active research topic. The objective of this paper is to introduce the field of Deep Convolutional Neural Networks for RGB-D Indoor Semantic Segmentation. This review presents the most popular…
Translation of fully automated deep learning based medical image segmentation technologies to clinical workflows face two main algorithmic challenges. The first, is the collection and archival of large quantities of manually annotated ground truth data for both training and validation. The second is the relative inability of the majority of deep learning based segmentation techniques to alert physicians to a likely segmentation failure. Here we propose a novel algorithm, named `Eigenrank' which addresses both of these challenges. Eigenrank can select for manual labeling, a subset of medical im…
Nagoya University（名古屋大学）；Aichi Cancer Center Hospital（爱知县癌症中心医院）
One of the most common tasks in medical imaging is semantic segmentation. Achieving this segmentation automatically has been an active area of research, but the task has been proven very challenging due to the large variation of anatomy across different patients. However, recent advances in deep learning have made it possible to significantly improve the performance of image recognition and semantic segmentation methods in the field of computer vision. Due to the data driven approaches of hierarchical feature learning in deep learning frameworks, these advances can be translated to medical ima…
The Hong Kong University of Science and Technology（香港科技大学）
Classical close-set semantic segmentation networks have limited ability to detect out-of-distribution (OOD) objects, which is important for safety-critical applications such as autonomous driving. Incrementally learning these OOD objects with few annotations is an ideal way to enlarge the knowledge base of the deep learning models. In this paper, we propose an open world semantic segmentation system that includes two modules: (1) an open-set semantic segmentation module to detect both in-distribution and OOD objects. (2) an incremental few-shot learning module to gradually incorporate those OO…
In interventional radiology, short video sequences of vein structure in motion are captured in order to help medical personnel identify vascular issues or plan intervention. Semantic segmentation can greatly improve the usefulness of these videos by indicating exact position of vessels and instruments, thus reducing the ambiguity. We propose a real-time segmentation method for these tasks, based on U-Net network trained in a Siamese architecture from automatically generated annotations. We make use of noisy low level binary segmentation and optical flow to generate multi class annotations that…
Brain image segmentation is used for visualizing and quantifying anatomical structures of the brain. We present an automated ap-proach using 2D deep residual dilated networks which captures rich context information of different tissues for the segmentation of eight brain structures. The proposed system was evaluated in the MICCAI Brain Segmentation Challenge and ranked 9th out of 22 teams. We further compared the method with traditional U-Net using leave-one-subject-out cross-validation setting on the public dataset. Experimental results shows that the proposed method outperforms traditional U…
Most contemporary approaches to instance segmentation use complex pipelines involving conditional random fields, recurrent neural networks, object proposals, or template matching schemes. In our paper, we present a simple yet powerful end-to-end convolutional neural network to tackle this task. Our approach combines intuitions from the classical watershed transform and modern deep learning to produce an energy map of the image where object instances are unambiguously represented as basins in the energy map. We then perform a cut at a single energy level to directly yield connected components c…
