We introduce a multi-task setup of identifying and classifying entities, relations, and coreference clusters in scientific articles. We create SciERC, a dataset that includes annotations for all three tasks and develop a unified framework called Scientific Information Extractor (SciIE) for with shared span representations. The multi-task setup reduces cascading errors between tasks and leverages cross-sentence relations through coreference links. Experiments show that our multi-task model outperforms previous models in scientific information extraction without using any domain-specific features. We further show that the framework supports construction of a scientific knowledge graph, which we use to analyze information in scientific literature.
Shanghai International Studies University（上海外国语大学）；Shanghai Jiao Tong University（上海交通大学）
Machine reading comprehension is a heavily-studied research and test field for evaluating new pre-trained language models (PrLMs) and fine-tuning strategies, and recent studies have enriched the pre-trained language models with syntactic, semantic and other linguistic information to improve the performance of the models. In this paper, we imitate the human reading process in connecting the anaphoric expressions and explicitly leverage the coreference information of the entities to enhance the word embeddings from the pre-trained language model, in order to highlight the coreference mentions of…
People are often entities of interest in tasks such as search and information extraction. In these tasks, the goal is to find as much information as possible about people specified by their name. However in text, some of the references to people are by pronouns (she, his) or generic descriptions (the professor, the German chancellor). It is therefore important that coreference resolution systems are able to link these different types of mentions to the correct person name. Here, we evaluate two state of the art coreference resolution systems on the subtask of Named Person Coreference, in which…
Document-level relation extraction (RE) aims to identify the relations between entities throughout an entire document. It needs complex reasoning skills to synthesize various knowledge such as coreferences and commonsense. Large-scale knowledge graphs (KGs) contain a wealth of real-world facts, and can provide valuable knowledge to document-level RE. In this paper, we propose an entity knowledge injection framework to enhance current document-level RE models. Specifically, we introduce coreference distillation to inject coreference knowledge, endowing an RE model with the more general capabili…
This paper introduces a new model that uses named entity recognition, coreference resolution, and entity linking techniques, to approach the task of linking people entities on Wikipedia people pages to their corresponding Wikipedia pages if applicable. Our task is different from general and traditional entity linking because we are working in a limited domain, namely, people entities, and we are including pronouns as entities, whereas in the past, pronouns were never considered as entities in entity linking. We have built 2 models, both outperforms our baseline model significantly. The purpose…
University of Washington（华盛顿大学）；Allen Institute for Artificial Intelligence（艾伦人工智能研究所）；Google AI Language（谷歌AI语言部门）
We introduce a general framework for several information extraction tasks that share span representations using dynamically constructed span graphs. The graphs are constructed by selecting the most confident entity spans and linking these nodes with confidence-weighted relation types and coreferences. The dynamic span graph allows coreference and relation type confidences to propagate through the graph to iteratively refine the span representations. This is unlike previous multi-task frameworks for information extraction in which the only interaction between tasks is in the shared first-layer …
Identifying related entities and events within and across documents is fundamental to natural language understanding. We present an approach to entity and event coreference resolution utilizing contrastive representation learning. Earlier state-of-the-art methods have formulated this problem as a binary classification problem and leveraged large transformers in a cross-encoder architecture to achieve their results. For large collections of documents and corresponding set of $n$ mentions, the necessity of performing $n^{2}$ transformer computations in these earlier approaches can be computation…
The Hebrew University of Jerusalem（耶路撒冷希伯来大学）；Georgia Institute of Technology（佐治亚理工学院）；Allen Institute for Artificial Intelligence（艾伦人工智能研究所）
We develop Process Execution Graphs (PEG), a document-level representation of real-world wet lab biochemistry protocols, addressing challenges such as cross-sentence relations, long-range coreference, grounding, and implicit arguments. We manually annotate PEGs in a corpus of complex lab protocols with a novel interactive textual simulator that keeps track of entity traits and semantic constraints during annotation. We use this data to develop graph-prediction models, finding them to be good at entity identification and local relation extraction, while our corpus facilitates further exploratio…
This paper summarizes the participation of the Laboratoire Informatique, Image et Interaction (L3i laboratory) of the University of La Rochelle in the Recognizing Ultra Fine-grained Entities (RUFES) track within the Text Analysis Conference (TAC) series of evaluation workshops. Our participation relies on two neural-based models, one based on a pre-trained and fine-tuned language model with a stack of Transformer layers for fine-grained entity extraction and one out-of-the-box model for within-document entity coreference. We observe that our approach has great potential in increasing the perfo…
Findings of the Fifth Shared Task on Multilingual Coreference Resolution: Expanding Datasets for Long-Range Entities
Charles University, Faculty of Mathematics and Physics, Institute of Formal and Applied Linguistics（查理大学，数学与物理学院，形式与应用语言学研究所）；University of West Bohemia, Faculty of Applied Sciences, Department of Computer Science and Engineering（西波赫大学，应用科学学院，计算机科学与工程系）
Queen Mary University of London（伦敦玛丽女王大学）；University of Essex（埃塞克斯大学）；University of Sheffield（谢菲尔德大学）
Anaphoric reference is an aspect of language interpretation covering a variety of types of interpretation beyond the simple case of identity reference to entities introduced via nominal expressions covered by the traditional coreference task in its most recent incarnation in ONTONOTES and similar datasets. One of these cases that go beyond simple coreference is anaphoric reference to entities that must be added to the discourse model via accommodation, and in particular split-antecedent references to entities constructed out of other entities, as in split-antecedent plurals and in some cases o…
In order for coreference resolution systems to be useful in practice, they must be able to generalize to new text. In this work, we demonstrate that the performance of the state-of-the-art system decreases when the names of PER and GPE named entities in the CoNLL dataset are changed to names that do not occur in the training set. We use the technique of adversarial gradient-based training to retrain the state-of-the-art system and demonstrate that the retrained system achieves higher performance on the CoNLL dataset (both with and without the change of named entities) and the GAP dataset.
NRC "Kurchatov institute"（国家研究中心“库尔恰托夫研究所”）；MEPhI National Research Nuclear University（莫斯科工程物理学院国家核研究大学）；I.M. Sechenov First Moscow State Medical University (Sechenov University)（谢切诺夫第一莫斯科国立医科大学（谢切诺夫大学））
We present the full-size Russian complexly NER-labeled corpus of Internet user reviews, along with an evaluation of accuracy levels reached on this corpus by a set of advanced deep learning neural networks to extract the pharmacologically meaningful entities from Russian texts. The corpus annotation includes mentions of the following entities: Medication (33005 mentions), Adverse Drug Reaction (1778), Disease (17403), and Note (4490). Two of them - Medication and Disease - comprise a set of attributes. A part of the corpus has the coreference annotation with 1560 coreference chains in 300 docu…
A.P. Ershov Institute of Informatics Systems（A.P. 叶尔绍夫信息学系统研究所）；Novosibirsk State University（新西伯利亚国立大学）
This paper is devoted to the extraction of entities and semantic relations between them from scientific texts, where we consider scientific terms as entities. In this paper, we present a dataset that includes annotations for two tasks and develop a system called TERMinator for the study of the influence of language models on term recognition and comparison of different approaches for relation extraction. Experiments show that language models pre-trained on the target language are not always show the best performance. Also adding some heuristic approaches may improve the overall quality of the …
Toyota Technological Institute at Chicago（芝加哥丰田技术研究所）；University of Chicago（芝加哥大学）
Long document coreference resolution remains a challenging task due to the large memory and runtime requirements of current models. Recent work doing incremental coreference resolution using just the global representation of entities shows practical benefits but requires keeping all entities in memory, which can be impractical for long documents. We argue that keeping all entities in memory is unnecessary, and we propose a memory-augmented neural network that tracks only a small bounded number of entities at a time, thus guaranteeing a linear runtime in length of document. We show that (a) the…
University of California, Los Angeles（加利福尼亚大学洛杉矶分校）；University of Virginia（弗吉尼亚大学）；Allen Institute for Artificial Intelligence（艾伦人工智能研究所）
We introduce a new benchmark, WinoBias, for coreference resolution focused on gender bias. Our corpus contains Winograd-schema style sentences with entities corresponding to people referred by their occupation (e.g. the nurse, the doctor, the carpenter). We demonstrate that a rule-based, a feature-rich, and a neural coreference system all link gendered pronouns to pro-stereotypical entities with higher accuracy than anti-stereotypical entities, by an average difference of 21.1 in F1 score. Finally, we demonstrate a data-augmentation approach that, in combination with existing word-embedding de…
GESIS –- Leibniz Institute for the Social Sciences（GESIS——莱布尼茨社会科学研究所）
Acknowledgments in scientific papers may give an insight into aspects of the scientific community, such as reward systems, collaboration patterns, and hidden research trends. The aim of the paper is to evaluate the performance of different embedding models for the task of automatic extraction and classification of acknowledged entities from the acknowledgment text in scientific papers. We trained and implemented a named entity recognition (NER) task using the Flair NLP-framework. The training was conducted using three default Flair NER models with two differently-sized corpora. The Flair Embed…
We present a new corpus comprising annotations of medical entities in case reports, originating from PubMed Central's open access library. In the case reports, we annotate cases, conditions, findings, factors and negation modifiers. Moreover, where applicable, we annotate relations between these entities. As such, this is the first corpus of this kind made available to the scientific community in English. It enables the initial investigation of automatic information extraction from case reports through tasks like Named Entity Recognition, Relation Extraction and (sentence/paragraph) relevance …
University of Edinburgh（爱丁堡大学）；University of Amsterdam（阿姆斯特丹大学）
Entity linking involves aligning textual mentions of named entities to their corresponding entries in a knowledge base. Entity linking systems often exploit relations between textual mentions in a document (e.g., coreference) to decide if the linking decisions are compatible. Unlike previous approaches, which relied on supervised systems or heuristics to predict these relations, we treat relations as latent variables in our neural entity-linking model. We induce the relations without any supervision while optimizing the entity-linking system in an end-to-end fashion. Our multi-relational model…
University of Wuppertal（伍珀塔尔大学）；University of Konstanz（康斯坦茨大学）；Heidelberg Academy of Sciences and Humanities（海德堡科学与人文学院）；University of Zurich（苏黎世大学）
Datasets and methods for cross-document coreference resolution (CDCR) focus on events or entities with strict coreference relations. They lack, however, annotating and resolving coreference mentions with more abstract or loose relations that may occur when news articles report about controversial and polarized events. Bridging and loose coreference relations trigger associations that may lead to exposing news readers to bias by word choice and labeling. For example, coreferential mentions of "direct talks between U.S. President Donald Trump and Kim" such as "an extraordinary meeting following …
Information Extraction from scientific literature can be challenging due to the highly specialised nature of such text. We describe our entity recognition methods developed as part of the DEAL (Detecting Entities in the Astrophysics Literature) shared task. The aim of the task is to build a system that can identify Named Entities in a dataset composed by scholarly articles from astrophysics literature. We planned our participation such that it enables us to conduct an empirical comparison between word-based tagging and span-based classification methods. When evaluated on two hidden test sets p…
The present study proposes LitStoryTeller, an interactive system for visually exploring the semantic structure of a scientific article. We demonstrate how LitStoryTeller could be used to answer some of the most fundamental research questions, such as how a new method was built on top of existing methods, based on what theoretical proof and experimental evidences. More importantly, LitStoryTeller can assist users to understand the full and interesting story a scientific paper, with a concise outline and important details. The proposed system borrows a metaphor from screen play, and visualizes t…
This paper presents DWIE, the 'Deutsche Welle corpus for Information Extraction', a newly created multi-task dataset that combines four main Information Extraction (IE) annotation subtasks: (i) Named Entity Recognition (NER), (ii) Coreference Resolution, (iii) Relation Extraction (RE), and (iv) Entity Linking. DWIE is conceived as an entity-centric dataset that describes interactions and properties of conceptual entities on the level of the complete document. This contrasts with currently dominant mention-driven approaches that start from the detection and classification of named entity mentio…
National Science Library, Chinese Academy of Science（中国科学院国家科学图书馆）；University of Chinese Academy of Science（中国科学院大学）；City University of New York（纽约城市大学）；Tsinghua University（清华大学）
Computational chemistry develops fast in recent years due to the rapid growth and breakthroughs in AI. Thanks for the progress in natural language processing, researchers can extract more fine-grained knowledge in publications to stimulate the development in computational chemistry. While the works and corpora in chemical entity extraction have been restricted in the biomedicine or life science field instead of the chemistry field, we build a new corpus in chemical bond field annotated for 7 types of entities: compound, solvent, method, bond, reaction, pKa and pKa value. This paper presents a …
University of Washington（华盛顿大学）；Google AI Language（谷歌AI语言团队）；Allen Institute for Artificial Intelligence（艾伦人工智能研究所）
We examine the capabilities of a unified, multi-task framework for three information extraction tasks: named entity recognition, relation extraction, and event extraction. Our framework (called DyGIE++) accomplishes all tasks by enumerating, refining, and scoring text spans designed to capture local (within-sentence) and global (cross-sentence) context. Our framework achieves state-of-the-art results across all tasks, on four datasets from a variety of domains. We perform experiments comparing different techniques to construct span representations. Contextualized embeddings like BERT perform w…
Centering theory (CT; Grosz et al., 1995) provides a linguistic analysis of the structure of discourse. According to the theory, local coherence of discourse arises from the manner and extent to which successive utterances make reference to the same entities. In this paper, we investigate the connection between centering theory and modern coreference resolution systems. We provide an operationalization of centering and systematically investigate if neural coreference resolvers adhere to the rules of centering theory by defining various discourse metrics and developing a search-based methodolog…
A.P. Ershov Institute of Informatics Systems, Siberian Branch, Russian Academy of Sciences（俄罗斯科学院西伯利亚分院 A.P. 叶尔绍夫信息系统研究所）；Novosibirsk State University（新西伯利亚国立大学）
In this paper, we present a system for information extraction from scientific texts in the Russian language. The system performs several tasks in an end-to-end manner: term recognition, extraction of relations between terms, and term linking with entities from the knowledge base. These tasks are extremely important for information retrieval, recommendation systems, and classification. The advantage of the implemented methods is that the system does not require a large amount of labeled data, which saves time and effort for data labeling and therefore can be applied in low- and mid-resource set…
University of Wuppertal（伍珀塔尔大学）；University of Konstanz（康斯坦茨大学）
Established cross-document coreference resolution (CDCR) datasets contain event-centric coreference chains of events and entities with identity relations. These datasets establish strict definitions of the coreference relations across related tests but typically ignore anaphora with more vague context-dependent loose coreference relations. In this paper, we qualitatively and quantitatively compare the annotation schemes of ECB+, a CDCR dataset with identity coreference relations, and NewsWCL50, a CDCR dataset with a mix of loose context-dependent and strict coreference relations. We propose a …
We introduce iFacetSum, a web application for exploring topical document sets. iFacetSum integrates interactive summarization together with faceted search, by providing a novel faceted navigation scheme that yields abstractive summaries for the user's selections. This approach offers both a comprehensive overview as well as concise details regarding subtopics of choice. Fine-grained facets are automatically produced based on cross-document coreference pipelines, rendering generic concepts, entities and statements surfacing in the source texts. We analyze the effectiveness of our application th…
Bar Ilan University（巴伊兰大学）；Allen Institute for Artificial Intelligence（艾伦人工智能研究所）；University of Washington（华盛顿大学）
Determining coreference of concept mentions across multiple documents is a fundamental task in natural language understanding. Previous work on cross-document coreference resolution (CDCR) typically considers mentions of events in the news, which seldom involve abstract technical concepts that are prevalent in science and technology. These complex concepts take diverse or ambiguous forms and have many hierarchical levels of granularity (e.g., tasks and subtasks), posing challenges for CDCR. We present a new task of Hierarchical CDCR (H-CDCR) with the goal of jointly inferring coreference clust…
Indian Institute of Technology Kanpur (IIT Kanpur)（印度理工学院坎普尔分校）
This paper presents the system for SemEval 2021 Task 8 (MeasEval). MeasEval is a novel span extraction, classification, and relation extraction task focused on finding quantities, attributes of these quantities, and additional information, including the related measured entities, properties, and measurement contexts. Our submitted system, which placed fifth (team rank) on the leaderboard, consisted of SciBERT with [CLS] token embedding and CRF layer on top. We were also placed first in Quantity (tied) and Unit subtasks, second in MeasuredEntity, Modifier and Qualifies subtasks, and third in Qu…
This article presents the SIRIUS-LTG-UiO system for the SemEval 2018 Task 7 on Semantic Relation Extraction and Classification in Scientific Papers. First we extract the shortest dependency path (sdp) between two entities, then we introduce a convolutional neural network (CNN) which takes the shortest dependency path embeddings as input and performs relation classification with differing objectives for each subtask of the shared task. This approach achieved overall F1 scores of 76.7 and 83.2 for relation classification on clean and noisy data, respectively. Furthermore, for combined relation e…
A.P. Ershov Institute of Informatics Systems SB RAS（俄罗斯科学院西伯利亚分院A.P.叶尔绍夫信息系统研究所）；Novosibirsk State University（新西伯利亚国立大学）
This paper is devoted to the study of methods for information extraction (entity recognition and relation classification) from scientific texts on information technology. Scientific publications provide valuable information into cutting-edge scientific advances, but efficient processing of increasing amounts of data is a time-consuming task. In this paper, several modifications of methods for the Russian language are proposed. It also includes the results of experiments comparing a keyword extraction method, vocabulary method, and some methods based on neural networks. Text collections for the…
The knowledge extraction task is to extract triple relations (head entity-relation-tail entity) from unstructured text data. The existing knowledge extraction methods are divided into "pipeline" method and joint extraction method. The "pipeline" method is to separate named entity recognition and entity relationship extraction and use their own modules to extract them. Although this method has better flexibility, the training speed is slow. The learning model of joint extraction is an end-to-end model implemented by neural network to realize entity recognition and relationship extraction at the…
Recent transformer-based approaches demonstrate promising results on relational scientific information extraction. Existing datasets focus on high-level description of how research is carried out. Instead we focus on the subtleties of how experimental associations are presented by building SciClaim, a dataset of scientific claims drawn from Social and Behavior Science (SBS), PubMed, and CORD-19 papers. Our novel graph annotation schema incorporates not only coarse-grained entity spans as nodes and relations as edges between them, but also fine-grained attributes that modify entities and their …
In human-human conversations, Context Tracking deals with identifying important entities and keeping track of their properties and relationships. This is a challenging problem that encompasses several subtasks such as slot tagging, coreference resolution, resolving plural mentions and entity linking. We approach this problem as an end-to-end modeling task where the conversational context is represented by an entity repository containing the entity references mentioned so far, their properties and the relationships between them. The repository is updated turn-by-turn, thus making training and i…
Georgia Institute of Technology（佐治亚理工学院）；Adobe Research（奥多比研究院）；MBZUAI（穆罕默德·本·扎耶德人工智能大学）；BioMap（百图生科）
We study the problem of extracting N-ary relation tuples from scientific articles. This task is challenging because the target knowledge tuples can reside in multiple parts and modalities of the document. Our proposed method ReSel decomposes this task into a two-stage procedure that first retrieves the most relevant paragraph/table and then selects the target entity from the retrieved component. For the high-level retrieval stage, ReSel designs a simple and effective feature set, which captures multi-level lexical and semantic similarities between the query and components. For the low-level se…
IRC-Bench: Recognizing Entities from Contextual Cues in First-Person Reminiscences
Intelligent Systems, Afeka Academic College of Engineering（阿法卡学术工程学院智能系统）；School of Computer Science, Faculty of Sciences, Holon Institute of Technology（霍隆理工学院计算机科学学院）
University of Toronto（多伦多大学）；Terrence Donnelly Centre for Cellular & Biomolecular Research（特伦斯·唐纳利细胞与生物分子研究中心）；Vector Institute for Artificial Intelligence（矢量人工智能研究所）；The Lunenfeld-Tanenbaum Research Institute, Sinai Health System（西奈卫生系统卢嫩费尔德-塔南鲍姆研究所）；Princess Margaret Cancer Centre, University Health Network（大学健康网络玛格丽特公主癌症中心）；Peter Munk Cardiac Center, University Health Network（大学健康网络彼得·蒙克心脏中心）
Motivated by the fact that many relations cross the sentence boundary, there has been increasing interest in document-level relation extraction (DocRE). DocRE requires integrating information within and across sentences, capturing complex interactions between mentions of entities. Most existing methods are pipeline-based, requiring entities as input. However, jointly learning to extract entities and relations can improve performance and be more efficient due to shared parameters and training steps. In this paper, we develop a sequence-to-sequence approach, seq2rel, that can learn the subtasks …
University of Technology Sydney（悉尼科技大学）；Microsoft（微软）；Sun Yat-sen University（中山大学）
We consider the problem of conversational question answering over a large-scale knowledge base. To handle huge entity vocabulary of a large-scale knowledge base, recent neural semantic parsing based approaches usually decompose the task into several subtasks and then solve them sequentially, which leads to following issues: 1) errors in earlier subtasks will be propagated and negatively affect downstream ones; and 2) each subtask cannot naturally share supervision signals with others. To tackle these issues, we propose an innovative multi-task learning framework where a pointer-equipped semant…
University Politehnica of Bucharest（布加勒斯特理工大学）；Research Institute for Artificial Intelligence（人工智能研究所）；Romanian Academy（罗马尼亚科学院）
Extracting semantic information on measurements and counts is an important topic in terms of analyzing scientific discourses. The 8th task of SemEval-2021: Counts and Measurements (MeasEval) aimed to boost research in this direction by providing a new dataset on which participants train their models to extract meaningful information on measurements from scientific texts. The competition is composed of five subtasks that build on top of each other: (1) quantity span identification, (2) unit extraction from the identified quantities and their value modifier classification, (3) span identificatio…
