Knowing brain connectivity is of great importance both in basic research and for clinical applications. We are proposing a method to infer directed connectivity from zero-lag covariances of neuronal activity recorded at multiple sites. This allows us to identify causal relations that are reflected in neuronal population activity. To derive our strategy, we assume a generic linear model of interacting continuous variables, the components of which represent the activity of local neuronal populations. The suggested method for inferring connectivity from recorded signals exploits the fact that the covariance matrix derived from the observed activity contains information about the existence, the direction and the sign of connections. Assuming a sparsely coupled network, we disambiguate the underlying causal structure via $L^1$-minimization. In general, this method is suited to infer effective connectivity from resting state data of various types. We show that our method is applicable over a broad range of structural parameters regarding network size and connection probability of the network. We also explored parameters affecting its activity dynamics, like the eigenvalue spectrum. Also, based on the simulation of suitable Ornstein-Uhlenbeck processes to model BOLD dynamics, we show that with our method it is possible to estimate directed connectivity from zero-lag covariances derived from such signals. In this study, we consider measurement noise and unobserved nodes as additional confounding factors. Furthermore, we investigate the amount of data required for a reliable estimate. Additionally, we apply the proposed method on a fMRI dataset. The resulting network exhibits a tendency for close-by areas being connected as well as inter-hemispheric connections between corresponding areas. Also, we found that a large fraction of identified connections were inhibitory.
We present a computational framework for analysis and visualization of non-linear functional connectivity in the human brain from resting state functional MRI (fMRI) data for purposes of recovering the underlying network community structure and exploring causality between network components. Our proposed methodology of non-linear mutual connectivity analysis (MCA) involves two computational steps. First, the pair-wise cross-prediction performance between resting state fMRI pixel time series within the brain is evaluated. The underlying network structure is subsequently recovered from the affin…
Contemporary neuroimaging methods can shed light on the basis of human neural and cognitive specializations, with important implications for neuroscience and medicine. Different MRI acquisitions provide different brain networks at the macroscale; whilst diffusion-weighted MRI (dMRI) provides a structural connectivity (SC) coincident with the bundles of parallel fibers between brain areas, functional MRI (fMRI) accounts for the variations in the blood-oxygenation-level-dependent T2* signal, providing functional connectivity (FC).Understanding the precise relation between FC and SC, that is, bet…
Brain network provides important insights for the diagnosis of many brain disorders, and how to effectively model the brain structure has become one of the core issues in the domain of brain imaging analysis. Recently, various computational methods have been proposed to estimate the causal relationship (i.e., effective connectivity) between brain regions. Compared with traditional correlation-based methods, effective connectivity can provide the direction of information flow, which may provide additional information for the diagnosis of brain diseases. However, existing methods either ignore t…
National Technical University of Athens（雅典国立理工大学）；Università degli Studi di Napoli Federico II（那不勒斯费德里科二世大学）
We construct embedded functional connectivity networks (FCN) from benchmark resting-state functional magnetic resonance imaging (rsfMRI) data acquired from patients with schizophrenia and healthy controls based on linear and nonlinear manifold learning algorithms, namely, Multidimensional Scaling (MDS), Isometric Feature Mapping (ISOMAP) and Diffusion Maps. Furthermore, based on key global graph-theoretical properties of the embedded FCN, we compare their classification potential using machine learning techniques. We also assess the performance of two metrics that are widely used for the const…
Despite the increase in calculation power in the last decades, the estimation of brain connectivity is still a tedious task. The high computational cost of the algorithms escalates with the square of the number of signals evaluated, usually in the range of thousands. In this work we propose a re-formulation of a widely used algorithm that allows the estimation of whole brain connectivity in much smaller times. We start from the original implementation of Phase Locking Value (PLV) and re-formulated it in a highly computational efficient way. Besides, this formulation stresses its strong similar…
Understanding the complex hierarchical topology of functional brain networks is a key aspect of functional connectivity research. Such topics are obscured by the widespread use of sparse binary network models which are fundamentally different to the complete weighted networks derived from functional connectivity. We introduce two techniques to probe the hierarchical complexity of topologies. Firstly, a new metric to measure hierarchical complexity; secondly, a Weighted Complex Hierarchy (WCH) model. To thoroughly evaluate our techniques, we generalise sparse binary network archetypes to weight…
Brain science is an evolving research area inviting great enthusiasm with its potential for providing insights and thereby, preventing, and treating multiple neuronal disorders affecting millions of patients. Discovery of relationships, such as brain connectivity, is a major goal in basic, translational, and clinical science. Algorithms for causal discovery are used in diverse fields for tackling problems similar to the task of reconstruction of neuronal brain connectivity. Our aim is to understand the strengths and limitations of these methods, measure performance and its determinants, and pr…
The ultimate goal of cognitive neuroscience is to understand the mechanistic neural processes underlying the functional organization of the brain. Key to this study is understanding structure of both the structural and functional connectivity between anatomical regions. In this paper we follow previous work in developing a simple dynamical model of the brain by simulating its various regions as Kuramoto oscillators whose coupling structure is described by a complex network. However in our simulations rather than generating synthetic networks, we simulate our synthetic model but coupled by a re…
Shandong Normal University（山东师范大学）；Shandong University（山东大学）
On the increase of major depressive disorders (MDD), many researchers paid attention to their recognition and treatment. Existing MDD recognition algorithms always use a single time-frequency domain method method, but the single time-frequency domain method is too simple and is not conducive to simulating the complex link relationship between brain functions. To solve this problem, this paper proposes a recognition method based on multi-layer brain functional connectivity networks (MBFCN) for major depressive disorder and conducts cognitive analysis. Cognitive analysis based on the proposed MB…
Understanding of normal and pathological brain function requires the identification and localization of functional connections between specialized regions. The availability of high time resolution signals of electric neuronal activity at several regions offers information for quantifying the connections in terms of information flow. When the signals cover the whole cortex, the number of connections is very large, making visualization and interpretation very difficult. We introduce here the singular value decomposition of time-lagged multiple signals, which localizes the senders, hubs, and rece…
Tulane University（杜兰大学）；University of Nebraska Medical Center（内布拉斯加大学医学中心）；Mind Research Network（心智研究网络）；Tri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS)（三机构神经影像与数据科学转化研究中心（TReNDS））；Georgia State University（佐治亚州立大学）；Georgia Institute of Technology（佐治亚理工学院）；Emory University（埃默里大学）
Emotion perception is essential to affective and cognitive development which involves distributed brain circuits. The ability of emotion identification begins in infancy and continues to develop throughout childhood and adolescence. Understanding the development of brain's emotion circuitry may help us explain the emotional changes observed during adolescence. Our previous study delineated the trajectory of brain functional connectivity (FC) from late childhood to early adulthood during emotion identification tasks. In this work, we endeavour to deepen our understanding from association to cau…
Oscillatory synchrony is hypothesized to support the flow of information between brain regions, with different phase-locked configurations enabling activation of different effective interactions. Along these lines, past work has proposed multistable phase-locking as a means for hardwired brain networks to flexibly support multiple functional patterns, without having to reconfigure their anatomical connections. Given the potential link between interareal communication and phase-locked states, it is thus important to understand how those states might be controlled to achieve rapid alteration of …
This paper considers joint learning of multiple sparse Granger graphical models to discover underlying common and differential Granger causality (GC) structures across multiple time series. This can be applied to drawing group-level brain connectivity inferences from a homogeneous group of subjects or discovering network differences among groups of signals collected under heterogeneous conditions. By recognizing that the GC of a single multivariate time series can be characterized by common zeros of vector autoregressive (VAR) lag coefficients, a group sparse prior is included in joint regular…
Energy Landscapes of Emotion: Quantifying Brain Network Stability During Happy and Sad Face Processing Using EEG-Based Hopfield Energy
College of Information and Control Engineering, Xi'an University of Architecture and Technology（西安建筑科技大学信息与控制工程学院）；Department of Neurosurgery, PLA General Hospital of Central Theater Command（中部战区总医院神经外科）
We consider exploratory methods for the discovery of cortical functional connectivity. Typically, data for the i-th subject (i=1...NS) is represented as an NVxNT matrix Xi, corresponding to brain activity sampled at NT moments in time from NV cortical voxels. A widely used method of analysis first concatenates all subjects along the temporal dimension, and then performs an independent component analysis (ICA) for estimating the common cortical patterns of functional connectivity. There exist many other interesting variations of this technique, as reviewed in [Calhoun et al. 2009 Neuroimage 45:…
Whole-brain network analyses remain the vanguard in neuroimaging research, coming to prominence within the last decade. Network science approaches have facilitated these analyses and allowed examining the brain as an integrated system. However, statistical methods for modeling and comparing groups of networks have lagged behind. Fusing multivariate statistical approaches with network science presents the best path to develop these methods. Toward this end, we propose a two-part mixed-effects modeling framework that allows modeling both the probability of a connection (presence/absence of an ed…
The interplay between the topology of cortical circuits and synchronized activity modes in distinct cortical areas is a key enigma in neuroscience. We present a new nonlocal mechanism governing the periodic activity mode: the greatest common divisor (GCD) of network loops. For a stimulus to one node, the network splits into GCD-clusters in which cluster neurons are in zero-lag synchronization. For complex external stimuli, the number of clusters can be any common divisor. The synchronized mode and the transients to synchronization pinpoint the type of external stimuli. The findings, supported …
The center stage of neuro-imaging is currently occupied by studies of functional correlations between brain regions. These correlations define the brain functional networks, which are the most frequently used framework to represent and interpret a variety of experimental findings. In previous work we first demonstrated that the relatively stronger BOLD activations contain most of the information relevant to understand functional connectivity and subsequent work confirmed that a large compression of the original signals can be obtained without significant loss of information. In this work we re…
The effect of the excitatory feedback in anticipated synchronization and phase bistability regimes in neuronal populations
Universidade Federal de Alagoas（阿拉戈阿斯联邦大学）；Instituto de Física Interdisciplinar y Sistemas Complejos IFISC (CSIC-UIB), Universitat de les Illes Balears（巴利阿里群岛大学）；Florida Atlantic University（佛罗里达大西洋大学）
We implement the Ising model on a structural connectivity matrix describing the brain at a coarse scale. Tuning the model temperature to its critical value, i.e. at the susceptibility peak, we find a maximal amount of total information transfer between the spin variables. At this point the amount of information that can be redistributed by some nodes reaches a limit and the net dynamics exhibits signature of the law of diminishing marginal returns, a fundamental principle connected to saturated levels of production. Our results extend the recent analysis of dynamical oscillators models on the …
Power spectra of awake resting state EEG recordings in humans typically have an Alpha peak at around 10 Hz riding a decreasing background "Xi process". Normal and pathological variations may have more than one peak or none. The single channel Xi-Alpha model (Pascual-Marqui et al 1988, https://doi.org/10.3109/00207458808985730) separated these two processes, providing a low-dimensional parametric description of EEG spectra. Currently lacking is a generative whole cortex model for activity spectra and intracortical functional connectivity. Here we introduce the "cortical Xi-Alpha model". The cro…
The problem of interest here is the study of brain functional and effective connectivity based on non-invasive EEG-MEG inverse solution time series. These signals generally have low spatial resolution, such that an estimated signal at any one site is an instantaneous linear mixture of the true, actual, unobserved signals across all cortical sites. False connectivity can result from analysis of these low-resolution signals. Recent efforts toward "unmixing" have been developed, under the name of "leakage correction". One recent noteworthy approach is that by Colclough et al (2015 NeuroImage, 117…
