We investigate the global dynamics of a general Kermack-McKendrick-type epidemic model formulated in terms of a system of renewal equations. Specifically, we consider a renewal model for which both the force of infection and the infected removal rates are arbitrary functions of the infection age, $τ$, and use the direct Lyapunov method to establish the global asymptotic stability of the equilibrium solutions. In particular, we show that the basic reproduction number, $R_0$, represents a sharp threshold parameter such that for $R_0\leq 1$, the infection-free equilibrium is globally asymptotically stable; whereas the endemic equilibrium becomes globally asymptotically stable when $R_0 > 1$, i.e. when it exists.
We extend a recent investigation by Meehan et al. (2019) regarding the global stability properties of the general Kermack-McKendrick (renewal) model to the multi-strain case. We demonstrate that the basic reproduction number of each strain $R_{0j}$ represents a sharp threshold parameter such that when $R_{0j} \leq 1$ for all $j$ each strain dies out and the infection-free equilibrium is globally asymptotically stable; whereas for $R_{01} \equiv \mathrm{max}_j\, R_{0j} > 1$ the endemic equilibrium point $\bar{P}^1$, at which only the fittest strain (i.e. strain 1) remains in circulation, become…
We investigate the global dynamics of a renewal-type epidemic model with variable susceptibility. We show that in this extended model there exists a unique endemic equilibrium and prove that it is globally asymptotically stable when $R_0 > 1$, i.e. when it exists. We also show that the infection-free equilibrium, which exists always, is globally asymptotically stable for $R_0 \leq 1$.
We use analytical methods to investigate a continuous vaccination strategy effects on the infectious disease dynamics in a closed population and a demographically open population. The methodology and key assumptions are based on Breda et al (2012). We show that the cumulative force of infection for the closed population and the endemic force of infection in the demographically open population can be reduced significantly by combining two factors: the vaccine effectiveness and the vaccination rate. The impact of these factors on the force of infection can transform an endemic steady state into …
Assessing the performance of compartmental and renewal models for learning $R_{t}$ using spatially heterogeneous epidemic simulations on real geographies
Renewal processes are a popular approach used in modelling infectious disease outbreaks. In a renewal process, previous infections give rise to future infections. However, while this formulation seems sensible, its application to infectious disease can be difficult to justify from first principles. It has been shown from the seminal work of Bellman and Harris that the renewal equation arises as the expectation of an age-dependent branching process. In this paper we provide a detailed derivation of the original Bellman Harris process. We introduce generalisations, that allow for time-varying re…
Explicit mathematical epidemiology results on age renewal kernels and R0 formulas are often consequences of the rank one property of the next generation matrix
A significant proportion of the infections driving the current {SARS-CoV-2} pandemic are transmitted asymptomatically. Here we introduce and study a simple epidemic model with separate compartments comprising asymptomatic and symptomatic infected individuals. The linear dynamics determining the outbreak condition of the model is equivalent to a renewal theory approach with exponential waiting time distributions. Exploiting a nontrivial conservation law of the full nonlinear dynamics, we derive analytic bounds on the peak number of infections in the absence and presence of mitigation through is…
In this paper we consider an SIRS epidemic model under a general assumption of density-dependent mortality. We prove the global stability of the disease-free equilibrium and propose a Lyapunov function that allows to demonstrate the global stability of the (unique) endemic state under broad conditions.
The stochastic extinction and stability in the mean of a family of SEIRS malaria models with a general nonlinear incidence rate is presented. The dynamics is driven by independent white noise processes from the disease transmission and natural death rates. The basic reproduction number $R^{*}_{0}$, the expected survival probability of the plasmodium $E(e^{-(μ_{v}T_{1}+μT_{2})})$, and other threshold values are calculated. A sample Lyapunov exponential analysis for the system is utilized to obtain extinction results. Moreover, the rate of extinction of malaria is estimated, and innovative local…
We study an S--I type epidemic model in an age-structured population, with mortality due to the disease. A threshold quantity is found that controls the stability of the disease-free equilibrium and guarantees the existence of an endemic equilibrium. We obtain conditions on the age-dependence of the susceptibility to infection that imply the uniqueness of the endemic equilibrium. An example with two endemic equilibria is shown. Finally, we analyse numerically how the stability of the endemic equilibrium is affected by extra-mortality and by the possible periodicities induced by the demographic…
We study a mosquito-borne epidemic model where the vector population is distinct in aquatic and adult stages and a saturating effect of disease transmission is assumed to ocurr when the number of infectious (humans and mosquitoes) becomes large enough. Several techniques, including center manifold analysis and sensitivity analysis, have been used to reveal relevant features of the model dynamics. We determine the existence of stability-instability thresholds and the individual role played in such thresholds by the model parameters.
In this work, we have developed a Coxian distributed SEIR model in incorporating an empirical incubation period. We show that the global dynamics are completely determined by a basic reproduction number. An application of the Coxian distributed SEIR model using data of an empirical incubation period is explored. The model may be useful for resolving causing the realistic intrinsic parts in classical epidemic models since Coxian distribution approximately converges to any distribution.
This paper studies the dynamics of a network-based SIRS epidemic model with vaccination and a nonmonotone incidence rate. This type of nonlinear incidence can be used to describe the psychological or inhibitory effect from the behavioral change of the susceptible individuals when the number of infective individuals on heterogeneous networks is getting larger. Using the analytical method, epidemic threshold $R_0$ is obtained. When $R_0$ is less than one, we prove the disease-free equilibrium is globally asymptotically stable and the disease dies out, while $R_0$ is greater than one, there exist…
We study the global dynamics of a reaction-diffusion SEIR infection model with distributed delay and nonlinear incidence rate. The well-posedness of the proposed model is proved. By means of Lyapunov functionals, we show that the disease free equilibrium state is globally asymptotically stable when the basic reproduction number is less or equal than one, and that the disease endemic equilibrium is globally asymptotically stable when the basic reproduction number is greater than one. Numerical simulations are provided to illustrate the obtained theoretical results.
We investigate the celebrated mathematical SICA model but using fractional differential equations in order to better describe the dynamics of HIV-AIDS infection. The infection process is modelled by a general functional response and the memory effect is described by the Caputo fractional derivative. Stability and instability of equilibrium points are determined in terms of the basic reproduction number. Furthermore, a fractional optimal control system is formulated and the best strategy for minimizing the spread of the disease into the population is determined through numerical simulations bas…
Public health services are constantly searching for new ways to reduce the spread of infectious diseases, such as public vaccination of asymptomatic individuals, quarantine (isolation) and treatment of symptomatic individuals. Epidemic models have a long history of assisting in public health planning and policy making. In this paper, we introduce epidemic models including variable population size, degree-related imperfect vaccination and quarantine on scale-free networks. More specifically, the models are formulated both on the population with and without permanent natural immunity to infectio…
Motivated with various responses of world governments to COVID-19, here we develop a toy model of the dependence epidemics spreading on the availability of tests for disease. Our model, that we call SUDR+K, is based on usual SIR model, but it splits the total fraction of infected individuals into two components: those that are undetected and those that are detected through tests. Moreover, we assume that available tests increase at a constant rate from the beginning of epidemics but are consumed to detect infected individuals. Strikingly we find a bi-stable behavior between a phase with a gian…
In this paper, we consider the impact of time delay by media on the control of the disease. We set up a class of SISM epidemic model with the time delay and the cumulative density of awareness caused by media. The sufficient condition of global asymptotic stability of disease-free equilibrium is approved. We get the global stability of the epidemic equilibrium and the existence conditions of Hopf bifurcation. Numerical simulations are presented to illustrate the analytical results. Finally, we analyze the influence of parameters on the control of infectious disease by combining the data of H1N…
Our paper investigates distributions of exposed and infectious time periods in an epidemic model and how applying a disease control strategy affects the model's accuracy. While ordinary differential equations are widely used for their simplicity, they incorporate an exponential distribution for time spent exposed or infectious. This allows for a high probability of unrealistically short exposed and infectious time periods. We propose that caution must be taken when applying intervention methods to basic models in order to avoid inaccurate predictions. Delay differential equations, which use a …
A new method is proposed to infer unobserved epidemic sub-populations by exploiting the synchronization properties of multistrain epidemic models. A model for dengue fever is driven by simulated data from secondary infective populations. Primary infective populations in the driven system synchronize to the correct values from the driver system. Most hospital cases of dengue are secondary infections, so this method provides a way to deduce unobserved primary infection levels. We derive center manifold equations that relate the driven system to the driver system and thus motivate the use of sync…
We introduce a nonlinear structured population model with diffusion in the state space. Individuals are structured with respect to a continuous variable which represents a pathogen load. The class of uninfected individuals constitutes a special compartment that carries mass, hence the model is equipped with generalized Wentzell (or dynamic) boundary conditions. Our model is intended to describe the spread of infection of a vertically transmitted disease, for example Wolbachia in a mosquito population. Therefore the (infinite dimensional) nonlinearity arises in the recruitment term. First we es…
Traditional studies about disease dynamics have focused on global stability issues, due to their epidemiological importance. We study a classical SIR-SI model for arboviruses in two different directions: we begin by describing an alternative proof of previously known global stability results by using only a Lyapunov approach. In the sequel, we take a different view and we argue that vectors and hosts can have very distinctive intrinsic time-scales, and that such distinctiveness extends to the disease dynamics. Under these hypothesis, we show that two asymptotic regimes naturally appear: the fa…
Emerging infectious diseases are existential threats to human health and global stability. The recent outbreaks of the novel coronavirus COVID-19 have rapidly formed a global pandemic, causing hundreds of thousands of infections and huge economic loss. The WHO declares that more precise measures to track, detect and isolate infected people are among the most effective means to quickly contain the outbreak. Based on trajectory provided by the big data and the mean field theory, we establish an aggregated risk mean field that contains information of all risk-spreading particles by proposing a sp…
We investigate a stochastic individual-based model for the population dynamics of host-virus systems where the microbial hosts may transition into a dormant state upon contact with virions, thus evading infection. Such a contact-mediated defence mechanism was described in Bautista et al (2015) for an archaeal host, while Jackson and Fineran (2019) and Meeske et al (2019) describe a related, CRISPR-Cas induced, dormancy defense of bacterial hosts to curb phage epidemics. We first analyse the effect of the dormancy-related model parameters on the probability and time of invasion of a newly arriv…
In this paper, a generalized fractional-order SEIR model is proposed, denoted by SEIQRP model, which has a basic guiding significance for the prediction of the possible outbreak of infectious diseases like COVID-19 and other insect diseases in the future. Firstly, some qualitative properties of the model are analyzed. The basic reproduction number $R_{0}$ is derived. When $R_{0}<1$, the disease-free equilibrium point is unique and locally asymptotically stable. When $R_{0}>1$, the endemic equilibrium point is also unique. Furthermore, some conditions are established to ensure the local asympto…
The frequent outbreak of severe foodborne diseases warns of a potential threat that the global trade networks could spread fatal pathogens. The global trade network is a typical overlay network, which compounds multiple standalone trade networks representing the transmission of a single product and connecting the same set of countries and territories through their own set of trade interactions. Although the epidemic dynamic implications of overlay networks have been debated in recent studies, some general answers for the overlay of multiple and diverse standalone networks remain elusive, espec…
In this paper we present a model describing Susceptible-Infected-Susceptible (SIS) type epidemics spreading on a dynamic contact network with random link activation and deletion where link ac- tivation can be locally constrained. We use and adapt a improved effective degree compartmental modelling framework recently proposed by Lindquist et al. [J. Lindquist et al., J. Math Biol. 62, 2, 143 (2010)] and Marceau et al. [V. Marceau et al., Phys. Rev. E 82, 036116 (2010)]. The resulting set of ordinary differential equations (ODEs) is solved numerically and results are compared to those obtained u…
