Motivated by applications in neuroimaging analysis, we propose a new regression model, Sparse TensOr REsponse regression (STORE), with a tensor response and a vector predictor. STORE embeds two key sparse structures: element-wise sparsity and low-rankness. It can handle both a non-symmetric and a symmetric tensor response, and thus is applicable to both structural and functional neuroimaging data. We formulate the parameter estimation as a non-convex optimization problem, and develop an efficient alternating updating algorithm. We establish a non-asymptotic estimation error bound for the actual estimator obtained from the proposed algorithm. This error bound reveals an interesting interaction between the computational efficiency and the statistical rate of convergence. When the distribution of the error tensor is Gaussian, we further obtain a fast estimation error rate which allows the tensor dimension to grow exponentially with the sample size. We illustrate the efficacy of our model through intensive simulations and an analysis of the Autism spectrum disorder neuroimaging data.
Radboud University（拉德堡德大学）；Radboud University Medical Centre（拉德堡德大学医学中心）；University of Oslo（奥斯陆大学）；Oslo University Hospital（奥斯陆大学医院）；King’s College London（伦敦国王学院）
Clinical neuroimaging has recently witnessed explosive growth in data availability which brings studying heterogeneity in clinical cohorts to the spotlight. Normative modeling is an emerging statistical tool for achieving this objective. However, its application remains technically challenging due to difficulties in properly dealing with nuisance variation, for example due to variability in image acquisition devices. Here, in a fully probabilistic framework, we propose an application of hierarchical Bayesian regression (HBR) for multi-site normative modeling. Our experimental results confirm t…
RadboudUMC（拉德堡德大学医学中心）；Donders Institute（唐德斯研究所）；University of Oxford（牛津大学）；King’s College London（伦敦国王学院）
Most brain disorders are very heterogeneous in terms of their underlying biology and developing analysis methods to model such heterogeneity is a major challenge. A promising approach is to use probabilistic regression methods to estimate normative models of brain function using (f)MRI data then use these to map variation across individuals in clinical populations (e.g., via anomaly detection). To fully capture individual differences, it is crucial to statistically model the patterns of correlation across different brain regions and individuals. However, this is very challenging for neuroimagi…
Technische Universität Berlin（柏林工业大学）；University of California, San Francisco（加利福尼亚大学旧金山分校）；Central China Normal University（华中师范大学）；BIFOLD – Berlin Institute for the Foundations of Learning and Data（柏林学习与数据基础研究所）；Korea University（高丽大学）；Max Planck Institute for Informatics（马克斯·普朗克信息学研究所）；Physikalisch-Technische Bundesanstalt（德国联邦物理技术研究院）；Charité – Universitätsmedizin Berlin（柏林夏里特医学院）；Bernstein Center for Computational Neuroscience（伯恩斯坦计算神经科学中心）
Several problems in neuroimaging and beyond require inference on the parameters of multi-task sparse hierarchical regression models. Examples include M/EEG inverse problems, neural encoding models for task-based fMRI analyses, and climate science. In these domains, both the model parameters to be inferred and the measurement noise may exhibit a complex spatio-temporal structure. Existing work either neglects the temporal structure or leads to computationally demanding inference schemes. Overcoming these limitations, we devise a novel flexible hierarchical Bayesian framework within which the sp…
Radboud University Medical Centre（拉德堡德大学医学中心）；Radboud University（拉德堡德大学）
Normative modeling has recently been proposed as an alternative for the case-control approach in modeling heterogeneity within clinical cohorts. Normative modeling is based on single-output Gaussian process regression that provides coherent estimates of uncertainty required by the method but does not consider spatial covariance structure. Here, we introduce a scalable multi-task Gaussian process regression (S-MTGPR) approach to address this problem. To this end, we exploit a combination of a low-rank approximation of the spatial covariance matrix with algebraic properties of Kronecker product …
Predictive models can be used on high-dimensional brain images for diagnosis of a clinical condition. Spatial regularization through structured sparsity offers new perspectives in this context and reduces the risk of overfitting the model while providing interpretable neuroimaging signatures by forcing the solution to adhere to domain-specific constraints. Total Variation (TV) enforces spatial smoothness of the solution while segmenting predictive regions from the background. We consider the problem of minimizing the sum of a smooth convex loss, a non-smooth convex penalty (whose proximal oper…
Motivation: Recent advances in technology for brain imaging and high-throughput genotyping have motivated studies examining the influence of genetic variation on brain structure. Wang et al. (Bioinformatics, 2012) have developed an approach for the analysis of imaging genomic studies using penalized multi-task regression with regularization based on a novel group $l_{2,1}$-norm penalty which encourages structured sparsity at both the gene level and SNP level. While incorporating a number of useful features, the proposed method only furnishes a point estimate of the regression coefficients; tec…
Radboud University Medical Center（拉德堡德大学医学中心）；Donders Institute for Brain Cognition and Behaviour（唐德斯大脑、认知与行为研究所）；King’s College（伦敦国王学院）
Normative modeling has recently been introduced as a promising approach for modeling variation of neuroimaging measures across individuals in order to derive biomarkers of psychiatric disorders. Current implementations rely on Gaussian process regression, which provides coherent estimates of uncertainty needed for the method but also suffers from drawbacks including poor scaling to large datasets and a reliance on fixed parametric kernels. In this paper, we propose a deep normative modeling framework based on neural processes (NPs) to solve these problems. To achieve this, we define a stochast…
This paper describes a new neuroimaging analysis toolbox that allows for the modeling of nonlinear effects at the voxel level, overcoming limitations of methods based on linear models like the GLM. We illustrate its features using a relevant example in which distinct nonlinear trajectories of Alzheimer's disease related brain atrophy patterns were found across the full biological spectrum of the disease. The open-source toolbox presented in this paper is available at https://github.com/imatge-upc/VNeAT.
Division of Biostatistics, University of California, Berkeley（加州大学伯克利分校生物统计学系）
Tensor regression models, such as CP regression and Tucker regression, have many successful applications in neuroimaging analysis where the covariates are of ultrahigh dimensionality and possess complex spatial structures. The high-dimensional covariate arrays, also known as tensors, can be approximated by low-rank structures and fit into the generalized linear models. The resulting tensor regression achieves a significant reduction in dimensionality while remaining efficient in estimation and prediction. Brain functional connectivity is an essential measure of brain activity and has shown sig…
In high dimension, it is customary to consider Lasso-type estimators to enforce sparsity. For standard Lasso theory to hold, the regularization parameter should be proportional to the noise level, yet the latter is generally unknown in practice. A possible remedy is to consider estimators, such as the Concomitant/Scaled Lasso, which jointly optimize over the regression coefficients as well as over the noise level, making the choice of the regularization independent of the noise level. However, when data from different sources are pooled to increase sample size, or when dealing with multimodal …
AdapDISCOM: An Adaptive Sparse Regression Method for High-Dimensional Multimodal Data With Block-Wise Missingness and Measurement Errors
Institut national de la recherche scientifique (INRS)（国家科学研究研究所）；Université du Québec à Chicoutimi (UQAC)（魁北克大学希库蒂米分校）；McGill University（麦吉尔大学）；The Neuro (Montreal Neurological Institute-Hospital)（蒙特利尔神经学研究所/医院）；Douglas Hospital Research Centre（道格拉斯医院研究中心）
University of Miami Herbert Business School（迈阿密大学赫伯特商学院）
In modern data science, dynamic tensor data is prevailing in numerous applications. An important task is to characterize the relationship between such dynamic tensor and external covariates. However, the tensor data is often only partially observed, rendering many existing methods inapplicable. In this article, we develop a regression model with partially observed dynamic tensor as the response and external covariates as the predictor. We introduce the low-rank, sparsity and fusion structures on the regression coefficient tensor, and consider a loss function projected over the observed entries…
Michigan State University（密歇根州立大学）；University of Wisconsin-Stout（威斯康星大学斯托特分校）；Texas A&M University（得克萨斯农工大学）
Over the past decade a wide spectrum of machine learning models have been developed to model the neurodegenerative diseases, associating biomarkers, especially non-intrusive neuroimaging markers, with key clinical scores measuring the cognitive status of patients. Multi-task learning (MTL) has been commonly utilized by these studies to address high dimensionality and small cohort size challenges. However, most existing MTL approaches are based on linear models and suffer from two major limitations: 1) they cannot explicitly consider upper/lower bounds in these clinical scores; 2) they lack the…
We focus in this paper on high-dimensional regression problems where each regressor can be associated to a location in a physical space, or more generally a generic geometric space. Such problems often employ sparse priors, which promote models using a small subset of regressors. To increase statistical power, the so-called multi-task techniques were proposed, which consist in the simultaneous estimation of several related models. Combined with sparsity assumptions, it lead to models enforcing the active regressors to be shared across models, thanks to, for instance L1 / Lq norms. We argue in …
Interpretable Deep Regression Models with Interval-Censored Failure Time Data
School of Mathematics, Jilin University（吉林大学数学学院）；School of Economics and Statistics, Guangzhou University（广州大学经济与统计学院）；Department of Statistics, Chinese University of Hong Kong（香港中文大学统计系）；School of Data Science, Fudan University（复旦大学数据科学学院）
Rutgers, The State University of New Jersey（罗格斯大学（新泽西州立大学））；University of Michigan（密歇根大学）
This paper studies a tensor-structured linear regression model with a scalar response variable and tensor-structured predictors, such that the regression parameters form a tensor of order $d$ (i.e., a $d$-fold multiway array) in $\mathbb{R}^{n_1 \times n_2 \times \cdots \times n_d}$. It focuses on the task of estimating the regression tensor from $m$ realizations of the response variable and the predictors where $m\ll n = \prod \nolimits_{i} n_i$. Despite the seeming ill-posedness of this problem, it can still be solved if the parameter tensor belongs to the space of sparse, low Tucker-rank te…
