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arXiv 1608.07959physics.bio-ph
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可控流条件下细菌种群扩增的粒径效应

Finite-size effects on bacterial population expansion under controlled fow conditions

Francesca Tesser, Jos C. H. Zeegers, Herman J. H. Clercx, Luc Brunsveld, Federico Toschi

摘要:

生物物种在自然环境中的扩张通常被描述为个体空间扩散和生长的综合效应。在水生生态系统的情况下,流动运输也可以作为一个额外的,平流引起的,扩散因素是非常相关的。有一个可重复的实验研究缺乏生物前沿的生物有机体在控制流栖息地。因此,目前尚不清楚化学反应的平流-反应-扩散前沿的理论和实验知识是否以及在多大程度上也可以适用于生物种群的扩张。我们设计并组装了一个专用的微流控装置,以控制和量化的$E.coli$细菌种群的扩张在同向流动和逆流条件下,测量在不同强度的强加流的前端速度。在方差相对于自催化反应的情况下,我们测量,几乎无关的逆流速度,前速度保持有限的恒定正值。一个简单的模型,结合有限大小的硬珠的生长,分散和漂移允许解释这一发现是由于细菌的有限体积效应。这表明基于Fisher-Kolmogorov-Petrovsky-Piscounov方程(FKPP)的模型忽略了生物体的有限大小,可能无法准确描述细菌空间生长动力学的物理特性。

英文摘要:

The expansion of biological species in natural environments is usually described as the combined effect of individual spatial dispersal and growth. In the case of aquatic ecosystems flow transport can also be extremely relevant as an extra, advection induced, dispersal factor. There is a lack of reproducible experimental studies on biological fronts of living organisms in controlled streaming habitats. It is thus not clear if, and to which extent, the current theoretical and experimental knowledge on advective-reactive-diffusive fronts for chemical reactions can also apply to the expansion of biological populations. We designed and assembled a dedicated microfluidic device to control and quantify the expansion of populations of $E.coli$ bacteria under both co-flowing and counter-flowing conditions, measuring the front speed at varying intensity of the imposed flow. At variance with respect to the case of autocatalytic reactions, we measure that almost irrespective of the counter-flow velocity, the front speed remains finite at a constant positive value. A simple model incorporating growth, dispersion and drift on finite-size hard beads allows to explain this finding as due to a finite volume effect of the bacteria. This indicates that models based on the Fisher-Kolmogorov-Petrovsky-Piscounov equation (FKPP) that ignore the finite size of organisms may be inaccurate to describe the physics of spatial growth dynamics of bacteria.

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