Big graph mining is an important research area and it has attracted considerable attention. It allows to process, analyze, and extract meaningful information from large amounts of graph data. Big graph mining has been highly motivated not only by the tremendously increasing size of graphs but also by its huge number of applications. Such applications include bioinformatics, chemoinformatics and social networks. One of the most challenging tasks in big graph mining is pattern mining in big graphs. This task consists on using data mining algorithms to discover interesting, unexpected and useful patterns in large amounts of graph data. It aims also to provide deeper understanding of graph data. In this context, several graph processing frameworks and scaling data mining/pattern mining techniques have been proposed to deal with very big graphs. This paper gives an overview of existing data mining and graph processing frameworks that deal with very big graphs. Then it presents a survey of current researches in the field of data mining / pattern mining in big graphs and discusses the main research issues related to this field. It also gives a categorization of both distributed data mining and machine learning techniques, graph processing frameworks and large scale pattern mining approaches.
This paper made a short review of Cloud Computing and Big Data, and discussed the portability of general data mining algorithms to Cloud Computing platform. It revealed the Cloud Computing platform based on Map-Reduce cannot solve all the Big Data and data mining problems. Transplanting the general data mining algorithms to the real-time Cloud Computing platform will be one of the research focuses in Cloud Computing and Big Data.
Big data is gaining overwhelming attention since the last decade. Almost all the fields of science and technology have experienced a considerable impact from it. The cloud computing paradigm has been targeted for big data processing and mining in a more efficient manner using the plethora of resources available from computing nodes to efficient storage. Cloud data mining introduces the concept of performing data mining and analytics of huge data in the cloud availing the cloud resources. But can we do better? Yes, of course! The main contribution of this chapter is the identification of four g…
With the overwhelming amount of complex and heterogeneous data pouring from any-where, any-time, and any-device, there is undeniably an era of Big Data. The emergence of the Big Data as a disruptive technology for next generation of intelligent systems, has brought many issues of how to extract and make use of the knowledge obtained from the data within short times, limited budget and under high rates of data generation. Companies are recognizing that big data can be used to make more accurate predictions, and can be used to enhance the business with the help of appropriate association rule mi…
As new data and updates are constantly arriving, the results of data mining applications become stale and obsolete over time. Incremental processing is a promising approach to refreshing mining results. It utilizes previously saved states to avoid the expense of re-computation from scratch. In this paper, we propose i2MapReduce, a novel incremental processing extension to MapReduce, the most widely used framework for mining big data. Compared with the state-of-the-art work on Incoop, i2MapReduce (i) performs key-value pair level incremental processing rather than task level re-computation, (ii…
This paper proposes a general system for compute-intensive graph mining tasks that find from a big graph all subgraphs that satisfy certain requirements (e.g., graph matching and community detection). Due to the broad range of applications of such tasks, many single-threaded algorithms have been proposed. However, graphs such as online social networks and knowledge graphs often have billions of vertices and edges, which require distributed processing in order to scale. Unfortunately, existing distributed graph processing systems such as Pregel and GraphLab are designed for data-intensive analy…
Graph mining applications analyze the structural properties of large graphs, and they do so by finding subgraph isomorphisms, which makes them computationally intensive. Existing graph mining techniques including both custom graph mining applications and general-purpose graph mining systems, develop efficient execution plans to speed up the exploration of the given query patterns that represent subgraph structures of interest. In this paper, we step beyond the traditional philosophy of optimizing the execution plans for a given set of patterns, and exploit the sub-structural similarities acros…
Graph mining workloads aim to extract structural properties of a graph by exploring its subgraph structures. General purpose graph mining systems provide a generic runtime to explore subgraph structures of interest with the help of user-defined functions that guide the overall exploration process. However, the state-of-the-art graph mining systems remain largely oblivious to the shape (or pattern) of the subgraphs that they mine. This causes them to: (a) explore unnecessary subgraphs; (b) perform expensive computations on the explored subgraphs; and, (c) hold intermediate partial subgraphs in …
Academy of Mathematics and Systems Science, Chinese Academy of Sciences（中国科学院数学与系统科学研究院）；University of Chinese Academy of Sciences（中国科学院大学）；Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences（中国科学院动物进化与遗传前沿交叉卓越创新中心）；Yunnan University（云南大学）
Matrix decomposition is one of the fundamental tools to discover knowledge from big data generated by modern applications. However, it is still inefficient or infeasible to process very big data using such a method in a single machine. Moreover, big data are often distributedly collected and stored on different machines. Thus, such data generally bear strong heterogeneous noise. It is essential and useful to develop distributed matrix decomposition for big data analytics. Such a method should scale up well, model the heterogeneous noise, and address the communication issue in a distributed sys…
How can we analyze enormous networks including the Web and social networks which have hundreds of billions of nodes and edges? Network analyses have been conducted by various graph mining methods including shortest path computation, PageRank, connected component computation, random walk with restart, etc. These graph mining methods can be expressed as generalized matrix-vector multiplication which consists of few operations inspired by typical matrix-vector multiplication. Recently, several graph processing systems based on matrix-vector multiplication or their own primitives have been propose…
Frequent subgraph mining (FSM) is an important task for exploratory data analysis on graph data. Over the years, many algorithms have been proposed to solve this task. These algorithms assume that the data structure of the mining task is small enough to fit in the main memory of a computer. However, as the real-world graph data grows, both in size and quantity, such an assumption does not hold any longer. To overcome this, some graph database-centric methods have been proposed in recent years for solving FSM; however, a distributed solution using MapReduce paradigm has not been explored extens…
University of Minnesota, Twin Cities（明尼苏达大学双城分校）；University of Florida（佛罗里达大学）
Spatiotemporal data mining aims to discover interesting, useful but non-trivial patterns in big spatial and spatiotemporal data. They are used in various application domains such as public safety, ecology, epidemiology, earth science, etc. This problem is challenging because of the high societal cost of spurious patterns and exorbitant computational cost. Recent surveys of spatiotemporal data mining need update due to rapid growth. In addition, they did not adequately survey parallel techniques for spatiotemporal data mining. This paper provides a more up-to-date survey of spatiotemporal data …
Clustering plays an important role in mining big data both as a modeling technique and a preprocessing step in many data mining process implementations. Fuzzy clustering provides more flexibility than non-fuzzy methods by allowing each data record to belong to more than one cluster to some degree. However, a serious challenge in fuzzy clustering is the lack of scalability. Massive datasets in emerging fields such as geosciences, biology and networking do require parallel and distributed computations with high performance to solve real-world problems. Although some clustering methods are alread…
Graph mining is one of the most important categories of graph algorithms. However, exploring the subgraphs of an input graph produces a huge amount of intermediate data. The 'think like a vertex' programming paradigm, pioneered by Pregel, cannot readily formulate mining problems, which is designed to produce graph computation problems like PageRank. Existing mining systems like Arabesque and RStream need large amounts of computing and memory resources. In this paper, we present Kaleido, an efficient single machine, out-of-core graph mining system which treats disks as an extension of memory. K…
Distributed data processing platforms such as MapReduce and Pregel have substantially simplified the design and deployment of certain classes of distributed graph analytics algorithms. However, these platforms do not represent a good match for distributed graph mining problems, as for example finding frequent subgraphs in a graph. Given an input graph, these problems require exploring a very large number of subgraphs and finding patterns that match some "interestingness" criteria desired by the user. These algorithms are very important for areas such as social net- works, semantic web, and bio…
This paper proposes Kudu, a distributed execution engine with a well-defined abstraction that can be integrated with existing single-machine graph pattern mining (GPM) systems to provide efficiency and scalability at the same time. The key novelty is the extendable embedding abstraction which can express pattern enumeration algorithms, allow fine-grained task scheduling, and enable low-cost GPM-specific data reuse to reduce communication cost. The effective BFSDFS hybrid exploration generates sufficient concurrent tasks for communication-computation overlapping with bounded memory consumption.…
Istanbul Technical University（伊斯坦布尔理工大学）；ASELSAN A.S.（阿瑟尔桑公司）
Most of the popular Big Data analytics tools evolved to adapt their working environment to extract valuable information from a vast amount of unstructured data. The ability of data mining techniques to filter this helpful information from Big Data led to the term Big Data Mining. Shifting the scope of data from small-size, structured, and stable data to huge volume, unstructured, and quickly changing data brings many data management challenges. Different tools cope with these challenges in their own way due to their architectural limitations. There are numerous parameters to take into consider…
Mining frequent itemsets from massive datasets is always being a most important problem of data mining. Apriori is the most popular and simplest algorithm for frequent itemset mining. To enhance the efficiency and scalability of Apriori, a number of algorithms have been proposed addressing the design of efficient data structures, minimizing database scan and parallel and distributed processing. MapReduce is the emerging parallel and distributed technology to process big datasets on Hadoop Cluster. To mine big datasets it is essential to re-design the data mining algorithm on this new paradigm.…
While the animal bioacoustics community at large is collecting huge amounts of acoustic data at an unprecedented pace, processing these data is problematic. Currently in bioacoustics, there is no effective way to achieve high performance computing using commericial off the shelf (COTS) or government off the shelf (GOTS) tools. Although several advances have been made in the open source and commercial software community, these offerings either support specific applications that do not integrate well with data formats in bioacoustics or they are too general. Furthermore, complex algorithms that …
Blockchain technology is ushering in another break-out year, the challenge of blockchain still remains to be solved. This paper analyzes the features of Bitcoin and Bitcoin-NG system based on blockchain, proposes an improved method of implementing blockchain systems by replacing the structure of the original chain with the graph data structure. It was named GraphChain. Each block represents a transaction and contains the balance status of the traders. Additionally, as everyone knows all the transactions in Bitcoin system will be baled by only one miner that will result in a lot of wasted effor…
Important graph mining problems such as Clustering are computationally demanding. To significantly accelerate these problems, we propose ProbGraph: a graph representation that enables simple and fast approximate parallel graph mining with strong theoretical guarantees on work, depth, and result accuracy. The key idea is to represent sets of vertices using probabilistic set representations such as Bloom filters. These representations are much faster to process than the original vertex sets thanks to vectorizability and small size. We use these representations as building blocks in important par…
Graph Pattern Mining (GPM) extracts higher-order information in a large graph by searching for small patterns of interest. GPM applications are computationally expensive, and thus attractive for GPU acceleration. Unfortunately, due to the complexity of GPM algorithms and parallel hardware, hand optimizing GPM applications suffers programming complexity, while existing GPM frameworks sacrifice efficiency for programmability. Moreover, little work has been done on GPU to scale GPM computation to large problem sizes. We describe G2Miner, the first Graph Pattern Mining (GPM) framework that runs on…
Many networks in real-life typically contain parts in which some nodes are more highly connected to each other than the other nodes of the network. The collection of such nodes are usually called clusters, communities, cohesive groups or modules. In graph terminology, it is called highly connected graph. In this paper, we first prove some properties related to highly connected graph. Based on these properties, we then redefine the highly connected subgraph which results in an algorithm that determines whether a given graph is highly connected in linear time. Then we present a computationally e…
The explosive increase in volume, velocity, variety, and veracity of data generated by distributed and heterogeneous nodes such as IoT and other devices, continuously challenge the state of art in big data processing platforms and mining techniques. Consequently, it reveals an urgent need to address the ever-growing gap between this expected exascale data generation and the extraction of insights from these data. To address this need, this paper proposes Stream to Cloud & Edge (S2CE), a first of its kind, optimized, multi-cloud and edge orchestrator, easily configurable, scalable, and extensib…
Graph pattern mining (GPM) is used in diverse application areas including social network analysis, bioinformatics, and chemical engineering. Existing GPM frameworks either provide high-level interfaces for productivity at the cost of expressiveness or provide low-level interfaces that can express a wide variety of GPM algorithms at the cost of increased programming complexity. Moreover, existing systems lack the flexibility to explore combinations of optimizations to achieve performance competitive with hand-optimized applications. We present Sandslash, an in-memory Graph Pattern Mining (GPM) …
University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；National Institute on Aging, National Institutes of Health（美国国立卫生研究院国家老龄化研究所）
In an effort to overcome the data deluge in computational biology and bioinformatics and to facilitate bioinformatics research in the era of big data, we identify some of the most influential algorithms that have been widely used in the bioinformatics community. These top data mining and machine learning algorithms cover classification, clustering, regression, graphical model-based learning, and dimensionality reduction. The goal of this study is to guide the focus of scalable computing experts in the endeavor of applying new storage and scalable computation designs to bioinformatics algorithm…
We present ASYMP, a distributed graph processing system developed for the timely analysis of graphs with trillions of edges. ASYMP has several distinguishing features including a robust fault tolerance mechanism, a lockless architecture which scales seamlessly to thousands of machines, and efficient data access patterns to reduce per-machine overhead. ASYMP is used to analyze the largest graphs at Google, and the graphs we consider in our empirical evaluation here are, to the best of our knowledge, the largest considered in the literature. Our experimental results show that compared to previou…
Huazhong University of Science & Technology（华中科技大学）；Peking University（北京大学）；Northwestern Polytechnical University（西北工业大学）；National University of Singapore（新加坡国立大学）
With the rapid growth of Internet technologies, cloud computing and social networks have become ubiquitous. An increasing number of people participate in social networks and massive online social data are obtained. In order to exploit knowledge from copious amounts of data obtained and predict social behavior of users, we urge to realize data mining in social networks. Almost all online websites use cloud services to effectively process the large scale of social data, which are gathered from distributed data centers. These data are so large-scale, high-dimension and widely distributed that we …
