This paper considers a multiple regression model and compares, under full model hypothesis, analytically as well as by simulation, the performance characteristics of some popular penalty estimators such as ridge regression, LASSO, adaptive LASSO, SCAD, and elastic net versus Least Squares Estimator, restricted estimator, preliminary test estimator, and Stein-type estimators when the dimension of the parameter space is smaller than the sample space dimension. We find that RR uniformly dominates LSE, RE, PTE, SE and PRSE while LASSO, aLASSO, SCAD, and EN uniformly dominates LSE only. Further, it is observed that neither penalty estimators nor Stein-type estimator dominate one another.
We propose a new penalized method for variable selection and estimation that explicitly incorporates the correlation patterns among predictors. This method is based on a combination of the minimax concave penalty and Laplacian quadratic associated with a graph as the penalty function. We call it the sparse Laplacian shrinkage (SLS) method. The SLS uses the minimax concave penalty for encouraging sparsity and Laplacian quadratic penalty for promoting smoothness among coefficients associated with the correlated predictors. The SLS has a generalized grouping property with respect to the graph rep…
Identifying homogeneous subgroups of variables can be challenging in high dimensional data analysis with highly correlated predictors. We propose a new method called Hexagonal Operator for Regression with Shrinkage and Equality Selection, HORSES for short, that simultaneously selects positively correlated variables and identifies them as predictive clusters. This is achieved via a constrained least-squares problem with regularization that consists of a linear combination of an L_1 penalty for the coefficients and another L_1 penalty for pairwise differences of the coefficients. This specificat…
High-dimensional sparse modeling via regularization provides a powerful tool for analyzing large-scale data sets and obtaining meaningful, interpretable models. The use of nonconvex penalty functions shows advantage in selecting important features in high dimensions, but the global optimality of such methods still demands more understanding. In this paper, we consider sparse regression with hard-thresholding penalty, which we show to give rise to thresholded regression. This approach is motivated by its close connection with the $L_0$-regularization, which can be unrealistic to implement in pr…
The Huber's criterion is a useful method for robust regression. The adaptive least absolute shrinkage and selection operator (lasso) is a popular technique for simultaneous estimation and variable selection. In the case of small sample size and large covariables numbers, this penalty is not very satisfactory variable selection method. In this paper, we introduce an adaptive reversed version of Huber's criterion as a penalty function. We call this penalty adaptive Berhu penalty. As for elastic net penalty, small coefficients contribute their $\ell_1$ norm to this penalty while larger coefficien…
This paper considers a high-dimensional linear regression problem where there are complex correlation structures among predictors. We propose a graph-constrained regularization procedure, named Sparse Laplacian Shrinkage with the Graphical Lasso Estimator (SLS-GLE). The procedure uses the estimated precision matrix to describe the specific information on the conditional dependence pattern among predictors, and encourages both sparsity on the regression model and the graphical model. We introduce the Laplacian quadratic penalty adopting the graph information, and give detailed discussions on th…
The truncated singular value decomposition (SVD) of the measurement matrix is the optimal solution to the_representation_ problem of how to best approximate a noisy measurement matrix using a low-rank matrix. Here, we consider the (unobservable)_denoising_ problem of how to best approximate a low-rank signal matrix buried in noise by optimal (re)weighting of the singular vectors of the measurement matrix. We exploit recent results from random matrix theory to exactly characterize the large matrix limit of the optimal weighting coefficients and show that they can be computed directly from data …
Penalization of the likelihood by Jeffreys' invariant prior, or by a positive power thereof, is shown to produce finite-valued maximum penalized likelihood estimates in a broad class of binomial generalized linear models. The class of models includes logistic regression, where the Jeffreys-prior penalty is known additionally to reduce the asymptotic bias of the maximum likelihood estimator; and also models with other commonly used link functions such as probit and log-log. Shrinkage towards equiprobability across observations, relative to the maximum likelihood estimator, is established theore…
We propose an improved LASSO estimation technique based on Stein-rule. We shrink classical LASSO estimator using preliminary test, shrinkage, and positive-rule shrinkage principle. Simulation results have been carried out for various configurations of correlation coefficients ($r$), size of the parameter vector ($β$), error variance ($σ^2$) and number of non-zero coefficients ($k$) in the model parameter vector. Several real data examples have been used to demonstrate the practical usefulness of the proposed estimators. Our study shows that the risk ordering given by LSE $>$ LASSO $>$ Stein-ty…
We consider the problem of simultaneous variable selection and constant coefficient identification in high-dimensional varying coefficient models based on B-spline basis expansion. Both objectives can be considered as some type of model selection problems and we show that they can be achieved by a double shrinkage strategy. We apply the adaptive group Lasso penalty in models involving a diverging number of covariates, which can be much larger than the sample size, but we assume the number of relevant variables is smaller than the sample size via model sparsity. Such so-called ultra-high dimens…
This article describes a full Bayesian treatment for simultaneous fixed-effect selection and parameter estimation in high-dimensional generalized linear mixed models. The approach consists of using a Bayesian adaptive Lasso penalty for signal-level adaptive shrinkage and a fast Variational Bayes scheme for estimating the posterior mode of the coefficients. The proposed approach offers several advantages over the existing methods, for example, the adaptive shrinkage parameters are automatically incorporated, no Laplace approximation step is required to integrate out the random effects. The perf…
In this paper, we propose a novel method to select significant variables and estimate the corresponding coefficients in multiple-index models with a group structure. All existing approaches for single-index models cannot be extended directly to handle this issue with several indices. This method integrates a popularly used shrinkage penalty such as LASSO with the group-wise minimum average variance estimation. It is capable of simultaneous dimension reduction and variable selection, while incorporating the group structure in predictors. Interestingly, the proposed estimator with the LASSO pena…
With a focus on linear models with smooth functional covariates, we propose a penalization framework (SACR) based on the nonzero centered ridge, where the center of the penalty is optimally reweighted in a supervised way, starting from the ordinary ridge solution as the initial centerfunction. In particular, we introduce a convex formulation that jointly estimates the model's coefficients and the weight function, with a roughness penalty on the centerfunction and constraints on the weights in order to recover a possibly smooth and/or sparse solution. This allows for a non-iterative and continu…
This paper constructs improved estimators of the means in the Gaussian saturated one-way layout with an ordinal factor. The least squares estimator for the mean vector in this saturated model is usually inadmissible. The hybrid shrinkage estimators of this paper exploit the possibility of slow variation in the dependence of the means on the ordered factor levels but do not assume it and respond well to faster variation if present. To motivate the development, candidate penalized least squares (PLS) estimators for the mean vector of a one-way layout are represented as shrinkage estimators relat…
The exponential distribution is applied in a very wide variety of statistical procedures. Among the most prominent applications are those in the field of life testing and reliability theory. When there are two record samples available for estimating the scale parameter, a preliminary test is usually used to determine whether to pool the samples or use the individual sample. In this paper, the preliminary test estimator and shrinkage estimator are studied. The optimum level of significance for preliminary test estimation and the optimum values of shrinkage coefficient are obtained based on mini…
The new class of Markov processes is proposed to realize the flexible shrinkage effects for the dynamic models. The transition density of the new process consists of two penalty functions, similarly to Bayesian fused LASSO in its functional form, that shrink the current state variable to its previous value and zero. The normalizing constant of the density, which is not ignorable in the posterior computation, is shown to be essentially the log-geometric mixture of double-exponential densities. This process comprises the state equation of the dynamic regression models, which is shown to be condi…
L1 -penalized regression methods such as the Lasso (Tibshirani 1996) that achieve both variable selection and shrinkage have been very popular. An extension of this method is the Fused Lasso (Tibshirani and Wang 2007), which allows for the incorporation of external information into the model. In this article, we develop new and fast algorithms for solving the Fused Lasso which are based on coordinate-wise optimization. This class of algorithms has recently been applied very successfully to solve L1 -penalized problems very quickly (Friedman et al. 2007). As a straightforward coordinate-wise pr…
Department of Statistics, University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校统计学系）
We consider a Bayesian framework for estimating a high-dimensional sparse precision matrix, in which adaptive shrinkage and sparsity are induced by a mixture of Laplace priors. Besides discussing our formulation from the Bayesian standpoint, we investigate the MAP (maximum a posteriori) estimator from a penalized likelihood perspective that gives rise to a new non-convex penalty approximating the $\ell_0$ penalty. Optimal error rates for estimation consistency in terms of various matrix norms along with selection consistency for sparse structure recovery are shown for the unique MAP estimator …
There are different problems for resolution of complex LC-MS or GC-MS data, such as the existence of embedded chromatographic peaks, continuum background and overlapping in mass channels for different components. These problems cause rotational ambiguity in recovered profiles calculated using multivariate curve resolution (MCR) methods. Since mass spectra are sparse in nature, sparsity has been proposed recently as a constraint in MCR methods for analyzing LC-MS data. There are different ways for implementation of the sparsity constraint, and majority of methods rely on imposing a penalty base…
Clinical research often focuses on complex traits in which many variables play a role in mechanisms driving, or curing, diseases. Clinical prediction is hard when data is high-dimensional, but additional information, like domain knowledge and previously published studies, may be helpful to improve predictions. Such complementary data, or co-data, provide information on the covariates, such as genomic location or p-values from external studies. Our method enables exploiting multiple and various co-data sources to improve predictions. We use discrete or continuous co-data to define possibly over…
We use Levy processes to generate joint prior distributions, and therefore penalty functions, for a location parameter as p grows large. This generalizes the class of local-global shrinkage rules based on scale mixtures of normals, illuminates new connections among disparate methods, and leads to new results for computing posterior means and modes under a wide class of priors. We extend this framework to large-scale regularized regression problems where p>n, and provide comparisons with other methodologies.
We introduce a general framework for estimation of inverse covariance, or precision, matrices from heterogeneous populations. The proposed framework uses a Laplacian shrinkage penalty to encourage similarity among estimates from disparate, but related, subpopulations, while allowing for differences among matrices. We propose an efficient alternating direction method of multipliers (ADMM) algorithm for parameter estimation, as well as its extension for faster computation in high dimensions by thresholding the empirical covariance matrix to identify the joint block diagonal structure in the esti…
This paper discusses a class of thresholding-based iterative selection procedures (TISP) for model selection and shrinkage. People have long before noticed the weakness of the convex $l_1$-constraint (or the soft-thresholding) in wavelets and have designed many different forms of nonconvex penalties to increase model sparsity and accuracy. But for a nonorthogonal regression matrix, there is great difficulty in both investigating the performance in theory and solving the problem in computation. TISP provides a simple and efficient way to tackle this so that we successfully borrow the rich resul…
We study ridge estimation of the precision matrix in the high-dimensional setting where the number of variables is large relative to the sample size. We first review two archetypal ridge estimators and note that their utilized penalties do not coincide with common ridge penalties. Subsequently, starting from a common ridge penalty, analytic expressions are derived for two alternative ridge estimators of the precision matrix. The alternative estimators are compared to the archetypes with regard to eigenvalue shrinkage and risk. The alternatives are also compared to the graphical lasso within th…
There are proposals that extend the classical generalized additive models (GAMs) to accommodate high-dimensional data ($p>>n$) using group sparse regularization. However, the sparse regularization may induce excess shrinkage when estimating smooth functions, damaging predictive performance. Moreover, most of these GAMs consider an "all-in-all-out" approach for functional selection, rendering them difficult to answer if nonlinear effects are necessary. While some Bayesian models can address these shortcomings, using Markov chain Monte Carlo algorithms for model fitting creates a new challenge, …
In this study, we propose shrinkage methods based on {\it generalized ridge regression} (GRR) estimation which is suitable for both multicollinearity and high dimensional problems with small number of samples (large $p$, small $n$). Also, it is obtained theoretical properties of the proposed estimators for Low/High Dimensional cases. Furthermore, the performance of the listed estimators is demonstrated by both simulation studies and real-data analysis, and compare its performance with existing penalty methods. We show that the proposed methods compare well to competing regularization technique…
High-dimensional data subject to heavy-tailed phenomena and heterogeneity are commonly encountered in various scientific fields and bring new challenges to the classical statistical methods. In this paper, we combine the asymmetric square loss and huber-type robust technique to develop the robust expectile regression for ultrahigh dimensional heavy-tailed heterogeneous data. Different from the classical huber method, we introduce two different tuning parameters on both sides to account for possibly asymmetry and allow them to diverge to reduce bias induced by the robust approximation. In the r…
This work focuses on the issue of variable selection in functional regression. Unlike most work in this framework, our approach does not select isolated points in the definition domain of the predictors, nor does it rely on the expansion of the predictors in a given functional basis. It provides an approach to select full intervals made of consecutive points. This feature improves the interpretability of the estimated coefficients and is desirable in the functional framework for which small shifts are frequent when comparing one predictor (curve) to another. Our method is described in a semipa…
The least absolute shrinkage and selection operator (lasso) and ridge regression produce usually different estimates although input, loss function and parameterization of the penalty are identical. In this paper we look for ridge and lasso models with identical solution set. It turns out, that the lasso model with shrink vector $λ$ and a quadratic penalized model with shrink matrix as outer product of $λ$ with itself are equivalent, in the sense that they have equal solutions. To achieve this, we have to restrict the estimates to be positive. This doesn't limit the area of application since we…
In this paper, we present a generalized estimating equations based estimation approach and a variable selection procedure for single-index models when the observed data are clustered. Unlike the case of independent observations, bias-correction is necessary when general working correlation matrices are used in the estimating equations. Our variable selection procedure based on smooth-threshold estimating equations \citep{Ueki-2009} can automatically eliminate irrelevant parameters by setting them as zeros and is computationally simpler than alternative approaches based on shrinkage penalty. Th…
We consider the problem of estimating a sparse multi-response regression function, with an application to expression quantitative trait locus (eQTL) mapping, where the goal is to discover genetic variations that influence gene-expression levels. In particular, we investigate a shrinkage technique capable of capturing a given hierarchical structure over the responses, such as a hierarchical clustering tree with leaf nodes for responses and internal nodes for clusters of related responses at multiple granularity, and we seek to leverage this structure to recover covariates relevant to each hiera…
We consider the estimation and inference in a system of high-dimensional regression equations allowing for temporal and cross-sectional dependency in covariates and error processes, covering rather general forms of weak temporal dependence. A sequence of regressions with many regressors using LASSO (Least Absolute Shrinkage and Selection Operator) is applied for variable selection purpose, and an overall penalty level is carefully chosen by a block multiplier bootstrap procedure to account for multiplicity of the equations and dependencies in the data. Correspondingly, oracle properties with a…
Shrinkage estimators that possess the ability to produce sparse solutions have become increasingly important to the analysis of today's complex datasets. Examples include the LASSO, the Elastic-Net and their adaptive counterparts. Estimation of penalty parameters still presents difficulties however. While variable selection consistent procedures have been developed, their finite sample performance can often be less than satisfactory. We develop a new strategy for variable selection using the adaptive LASSO and adaptive Elastic-Net estimators with $p_n$ diverging. The basic idea first involves …
In the sparse linear regression setting, we consider testing the significance of the predictor variable that enters the current lasso model, in the sequence of models visited along the lasso solution path. We propose a simple test statistic based on lasso fitted values, called the covariance test statistic, and show that when the true model is linear, this statistic has an $\operatorname {Exp}(1)$ asymptotic distribution under the null hypothesis (the null being that all truly active variables are contained in the current lasso model). Our proof of this result for the special case of the first…
For the regression model where the errors follow the elliptically contoured distribution (ECD), we consider the least squares (LS), restricted LS (RLS), preliminary test (PT), Stein-type shrinkage (S) and positive-rule shrinkage (PRS) estimators for the regression parameters. We compare the quadratic risks of the estimators to determine the relative dominance properties of the five estimators.
This paper is concerned with the simultaneous estimation of $k$ population means when one suspects that the $k$ means are nearly equal. As an alternative to the preliminary test estimator based on the test statistics for testing hypothesis of equal means, we derive Bayesian and minimax estimators which shrink individual sample means toward a pooled mean estimator given under the hypothesis. It is shown that both the preliminary test estimator and the Bayesian minimax shrinkage estimators are further improved by shrinking the pooled mean estimator. The performance of the proposed shrinkage esti…
In this study, we present the preliminary test, Stein-type and positive part Liu estimators in the linear models when the parameter vector $\boldsymbolβ$ is partitioned into two parts, namely, the main effects $\boldsymbolβ_1$ and the nuisance effects $\boldsymbolβ_2$ such that $\boldsymbolβ=\left(\boldsymbolβ_1, \boldsymbolβ_2 \right)$. We consider the case that a priori known or suspected set of the explanatory variables do not contribute to predict the response so that a sub-model may be enough for this purpose. Thus, the main interest is to estimate $\boldsymbolβ_1$ when $\boldsymbolβ_2$ i…
In this paper, we propose a new regularization technique called "functional SCAD". We then combine this technique with the smoothing spline method to develop a smooth and locally sparse (i.e., zero on some sub-regions) estimator for the coefficient function in functional linear regression. The functional SCAD has a nice shrinkage property that enables our estimating procedure to identify the null subregions of the coefficient function without over shrinking the non-zero values of the coefficient function. Additionally, the smoothness of our estimated coefficient function is regularized by a ro…
Recently, the well known Liu estimator (Liu, 1993) is attracted researcher's attention in regression parameter estimation for an ill conditioned linear model. It is also argued that imposing sub-space hypothesis restriction on parameters improves estimation by shrinking toward non-sample information. Chang (2015) proposed the almost unbiased Liu estimator (AULE) in the binary logistic regression. In this article, some improved unbiased Liu type estimators, namely, restricted AULE, preliminary test AULE, Stein-type shrinkage AULE and its positive part for estimating the regression parameters in…
In this study, we consider preliminary test and shrinkage estimation strategies for quantile regression models. In classical Least Squares Estimation (LSE) method, the relationship between the explanatory and explained variables in the coordinate plane is estimated with a mean regression line. In order to use LSE, there are three main assumptions on the error terms showing white noise process of the regression model, also known as Gauss-Markov Assumptions, must be met: (1) The error terms have zero mean, (2) The variance of the error terms is constant and (3) The covariance between the errors …
In a classical regression model, it is usually assumed that the explanatory variables are independent of each other and error terms are normally distributed. But when these assumptions are not met, situations like the error terms are not independent or they are not identically distributed or both of these, LSE will not be robust. Hence, quantile regression has been used to complement this deficiency of classical regression analysis and to improve the least square estimation (LSE). In this study, we consider preliminary test and shrinkage estimation strategies for quantile regression models wit…
