The equilibrium structure and dynamics of a single polymer chain in a thermal solvent is by now well-understood in terms of scaling laws. Here we consider a polymer in a bacterial bath, i.e. in a solvent consisting of active particles which bring in nonequilibrium fluctuations. Using computer simulations of a self-avoiding polymer chain in two dimensions which is exposed to a dilute bath of active particles, we show that the Flory-scaling exponent is unaffected by the bath activity provided the chain is very long. Conversely, for shorter chains, there is a nontrivial coupling between the bacteria intruding into the chain which may stiffen and expand the chain in a nonuniversal way. As a function of the molecular weight, the swelling first scales faster than described by the Flory exponent, then an unusual plateau-like behaviour is reached and finally a crossover to the universal Flory behaviour is observed. As a function of bacterial activity, the chain end-to-end distance exhibits a pronounced non-monotonicity. Moreover, the mean-square displacement of the center of mass of the chain shows a ballistic behaviour at intermediate times as induced by the active solvent. Our predictions are verifiable in two-dimensional bacterial suspensions and for colloidal model chains exposed to artificial colloidal microswimmers.
The motion of a pair of micro-wedges ("carriers") in a turbulent bacterial bath is explored using computer simulations with explicit modeling of the bacteria and experiments. The orientation of the two micro-wedges is parallel and fixed by an applied magnetic field but the translational coordinates can move freely as induced by the bacterial bath. As a result, two carriers of same orientation move such that their mutual distance decreases. Eventually the two carriers stack on each other with no intervening bacteria exhibiting a stable dynamical mode where the two micro-wedges follow each other…
In this topical review, we give an overview of the structure and dynamics of a single polymer chain in active baths, Gaussian or non-Gaussian. The review begins with the discussion of single flexible or semiflexible linear polymer chains subjected to two noises, thermal and active. The active noise has either Gaussian or non-Gaussian distribution but has a memory, accounting for the persistent motion of the active bath particles. This finite persistence makes the reconfiguration dynamics of the chain slow as compared to the purely thermal case and the chain swells. The active noise also result…
We investigate the nonequilibrium energetics near a critical point of a non-linear driven oscillator immersed in an active bacterial bath. At the critical point, we reveal a scaling exponent of the average power $\langle\dot{W}\rangle\sim (D_{\rm a}/τ)^{1/4}$ where $D_{\rm a}$ is the effective diffusivity and $τ$ the correlation time of the bacterial bath described by a Gaussian colored noise. Other features that we investigate are the average stationary power and the variance of the work both below and above the saddle-node bifurcation. Above the bifurcation, the average power attains an opti…
Micromotors pushed by biological entities, like motile bacteria, constitute a fascinating way to convert chemical energy into mechanical work at the micrometer scale. Here we show, by using numerical simulations, that a properly designed asymmetric object can be spontaneously set into the desired motion when immersed in a chaotic bacterial bath. Our findings open the way to conceive new hybrid microdevices exploiting the mechanical power production of bacterial organisms. Moreover, the system provides an example of how, in contrast with equilibrium thermal baths, the irreversible chaotic motio…
Recent experiments on particle diffusion in bacterial baths indicate the formation of correlated structures in the form of bacterial swirls. Here we predict that such a structural ordering would give rise to the new effect of propagating shear waves in a bacterial bath at length scales of the order of a swirl, which corresponds to time scales of the order of the lifetime of a swirl. Our prediction can be tested against future experiments in bacterial baths.
A prime example of non-equilibrium or active environment is a biological cell. In order to understand in-vivo functioning of biomolecules such as proteins, chromatins, a description beyond equilibrium is absolutely necessary. In this context, biomolecules have been modeled as Rouse chains in Gaussian active bath. However, these non-equilibrium fluctuations in biological cells are non-Gaussian. This motivates us to take a Rouse chain subjected to a series of pulses of force with finite duration, mimicking run and tumble motion of a class of micro-organisms. Thus by construction, this active for…
We investigate the swelling dynamics driven by solvent absorption in a hydrogel sphere immersed in a solvent bath, through an accurate computational model and numerical study. We extensively describe the transient process from dry to wet and discuss the onset of surface instabilities through a measure of the lack of smoothness of the outer surface and a morphological pattern of that surface with respect to the two material parameters driving the swelling dynamics.
We demonstrate that collective turbulent-like motion in a bacterial bath can power and steer directed transport of mesoscopic carriers through the suspension. In our experiments and simulations, a microwedge-like "bulldozer" draws energy from a bacterial bath of varied density. We obtain that a maximal transport speed is achieved in the turbulent state of the bacterial suspension. This apparent rectification of random motion of bacteria is caused by polar ordered bacteria inside the cusp region of the carrier, which is shielded from the outside turbulent fluctuations.
We present a joint experimental and computational study of the effect of bacterial motion on micron-scale colloids contained in a two-dimensional suspension of Bacillus subtilis. With respect to previous work using E. coli, here we introduce a novel experimental set-up that allows us to realise a two-dimensional bacterial suspension insensitive to either evaporation or fluid flow. By analysing the mean square displacements of both bacteria and colloids, we confirm the existence of a crossover from super-diffusive behaviour at short time scales to normal diffusion at longer times. We also study…
Self-propelling bacteria are a dream of nano-technology. These unicellular organisms are not just capable of living and reproducing, but they can swim very efficiently, sense the environment and look for food, all packaged in a body measuring a few microns. Before such perfect machines could be artificially assembled, researchers are beginning to explore new ways to harness bacteria as propelling units for micro-devices. Proposed strategies require the careful task of aligning and binding bacterial cells on synthetic surfaces in order to have them work cooperatively. Here we show that asymmetr…
We probe non-equilibrium properties of an active bacterial bath through measurements of correlations of passive tracer particles and the response function of a driven, optically trapped tracer. These measurements demonstrate violation of the fluctuation-dissipation theorem and enable us to extract the power spectrum of the active stress fluctuations. In some cases, we observe $1/\sqrtω$ scaling in the noise spectrum which we show can be derived from a theoretical model incorporating coupled stress, orientation, and concentration fluctuations of the bacteria.
We present an experimentally guided, bi-phasic, multi-species ionic gel model to compare and make quantitative predictions on the viscoelastic properties of healthy mucus versus Cystic-Fibrosis infected mucus. The mixture theory consists of the mucus (polymer phase) and water (solvent phase) as well as several different ions: H$^+$, Na$^+$, Cl$^-$ and Ca$^{2+}$. The model is calibrated with the experimental data of mucus diffusivities. Numerical studies reveal that the Donnan forces are the dominating mechanism driving the mucus swelling/deswelling transition. However, these transitions could …
Active matter such as swarming bacteria and motile colloids exhibits exotic properties different from conventional equilibrium materials. Among these properties, the enhanced diffusion of tracer particles is generally deemed as a hallmark of active matter. Here, rather than spherical tracers, we investigate the diffusion of isolated ellipsoids in quasi-two-dimensional bacterial bath. Our study reveals a nonlinear enhancement of both translational and rotational diffusions. More importantly, we uncover an anomalous coupling between translation and rotation that is strictly prohibited in the cla…
We present an experimentally guided, multi-phase, multi-species polyelectrolyte gel model to make quantitative predictions on the electro-chemical properties of articular cartilage. The mixture theory consists of two different types of polymers: Poly(ethylene gylcol) (PEG), Chondrotin sulfate (ChS), water (acting as solvent) and several different ions: H$^+$, Na$^+$, Cl$^-$. The polymer chains have covalent cross-links modeled using Doi rubber elasticity theory. Numerical studies on polymer volume fraction and net osmolarity (difference in the solute concentration across the gel) show the inte…
From synthetic active devices such as self-propelling Janus colloids to micro-organisms like bacteria, micro-algae, living cells in tissues, active fluctuations are ubiquitous. Thermodynamics of small systems involving thermal as well as active fluctuations are of immense importance. They can be employed to extract thermodynamic work. Here we propose a simple model system that can produce thermodynamic work exploiting active fluctuations. We consider a Brownian particle, trapped by an externally controlled harmonic confinement which time-periodically contracts and expands by modulating its spr…
The conformational and dynamical properties of active polymers in solution are determined by the nature of the activity, and the behavior of polymers with self-propelled, active Brownian particle-type monomers differs qualitatively from that of polymers with monomers driven externally by colored noise forces. We present simulation and theoretical results for polymers in solution in the presence of external active noise. In simulations, a semiflexible bead-spring chain is considered, in analytical calculations, a continuous linear wormlike chain. Activity is taken into account by independent mo…
