Steffen Lauritzen, Nicolai Meinshausen
Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
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Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Rejoinder to "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
We explore the algebraic structure of the solution space of convex optimization problem Constrained Minimum Trace Factor Analysis (CMTFA), when the population covariance matrix $Σ_x$ has an additional latent graphical constraint, namely, a latent star topology. In particular, we have shown that CMTFA can have either a rank $ 1 $ or a rank $ n-1 $ solution and nothing in between. The special case of a rank $ 1 $ solution, corresponds to the case where just one latent variable captures all the dependencies among the observables, giving rise to a star topology. We found explicit conditions for bo…
The edge structure of the graph defining an undirected graphical model describes precisely the structure of dependence between the variables in the graph. In many applications, the dependence structure is unknown and it is desirable to learn it from data, often because it is a preliminary step to be able to ascertain causal effects. This problem, known as structure learning, is hard in general, but for Gaussian graphical models it is slightly easier because the structure of the graph is given by the sparsity pattern of the precision matrix of the joint distribution, and because independence co…
Gaussian graphical models (GGM) have been widely used in many high-dimensional applications ranging from biological and financial data to recommender systems. Sparsity in GGM plays a central role both statistically and computationally. Unfortunately, real-world data often does not fit well to sparse graphical models. In this paper, we focus on a family of latent variable Gaussian graphical models (LVGGM), where the model is conditionally sparse given latent variables, but marginally non-sparse. In LVGGM, the inverse covariance matrix has a low-rank plus sparse structure, and can be learned in …
Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Discussion of "Latent variable graphical model selection via convex optimization" by Venkat Chandrasekaran, Pablo A. Parrilo and Alan S. Willsky [arXiv:1008.1290].
Motivated by modern applications in which one constructs graphical models based on a very large number of features, this paper introduces a new class of cluster-based graphical models, in which variable clustering is applied as an initial step for reducing the dimension of the feature space. We employ model assisted clustering, in which the clusters contain features that are similar to the same unobserved latent variable. Two different cluster-based Gaussian graphical models are considered: the latent variable graph, corresponding to the graphical model associated with the unobserved latent va…
Extremal graphical modeling with latent variables via convex optimization
本文针对含潜变量的极值图模型学习问题，提出可求解的凸规划方法 eglatent，通过将 Hüsler-Reiss 精度矩阵分解为稀疏与低秩分量，一致恢复条件图和潜变量数量，并在合成与真实数据上验证了性能提升。
Latent tree graphical models are widely used in computational biology, signal and image processing, and network tomography. Here we design a new efficient, estimation procedure for latent tree models, including Gaussian and discrete, reversible models, that significantly improves on previous sample requirement bounds. Our techniques are based on a new hidden state estimator which is robust to inaccuracies in estimated parameters. More precisely, we prove that latent tree models can be estimated with high probability in the so-called Kesten-Stigum regime with $O(log^2 n)$ samples where $n$ is t…
We investigate probabilistic graphical models that allow for both cycles and latent variables. For this we introduce directed graphs with hyperedges (HEDGes), generalizing and combining both marginalized directed acyclic graphs (mDAGs) that can model latent (dependent) variables, and directed mixed graphs (DMGs) that can model cycles. We define and analyse several different Markov properties that relate the graphical structure of a HEDG with a probability distribution on a corresponding product space over the set of nodes, for example factorization properties, structural equations properties, …
We study parameter identifiability of directed Gaussian graphical models with one latent variable. In the scenario we consider, the latent variable is a confounder that forms a source node of the graph and is a parent to all other nodes, which correspond to the observed variables. We give a graphical condition that is sufficient for the Jacobian matrix of the parametrization map to be full rank, which entails that the parametrization is generically finite-to-one, a fact that is sometimes also referred to as local identifiability. We also derive a graphical condition that is necessary for such …
Latent Gaussian and Hüsler--Reiss Graphical Models with Golazo Penalty
本文提出用灵活的 Golazo 惩罚统一推广潜在高斯与 Hüsler–Reiss 图模型的结构学习，可涵盖自适应 lasso、正依赖约束和预定稀疏模式，并开发算法在模拟与真实数据上验证。
Measurement error is ubiquitous in many variables - from blood pressure recordings in physiology to intelligence measures in psychology. Structural equation models (SEMs) account for the process of measurement by explicitly distinguishing between latent variables and their measurement indicators. Users often fit entire SEMs to data, but this can fail if some model parameters are not identified. The model-implied instrumental variables (MIIVs) approach is a more flexible alternative that can estimate subsets of model parameters in identified equations. Numerous methods to identify individual pa…
Unfolding Tensors to Identify the Graph in Discrete Latent Bipartite Graphical Models
本文通过张量展开技术，为离散二部图模型提出构造性可识别性证明，可同时输出潜在变量数与二部图，允许非线性依赖，条件仅需每个潜在变量连接至少两个纯观测变量。
Differential graphical models are designed to represent the difference between the conditional dependence structures of two groups, thus are of particular interest for scientific investigation. Motivated by modern applications, this manuscript considers an extended setting where each group is generated by a latent variable Gaussian graphical model. Due to the existence of latent factors, the differential network is decomposed into sparse and low-rank components, both of which are symmetric indefinite matrices. We estimate these two components simultaneously using a two-stage procedure: (i) an …
Suppose we observe samples of a subset of a collection of random variables. No additional information is provided about the number of latent variables, nor of the relationship between the latent and observed variables. Is it possible to discover the number of latent components, and to learn a statistical model over the entire collection of variables? We address this question in the setting in which the latent and observed variables are jointly Gaussian, with the conditional statistics of the observed variables conditioned on the latent variables being specified by a graphical model. As a first…
The problem of structure estimation in graphical models with latent variables is considered. We characterize conditions for tractable graph estimation and develop efficient methods with provable guarantees. We consider models where the underlying Markov graph is locally tree-like, and the model is in the regime of correlation decay. For the special case of the Ising model, the number of samples $n$ required for structural consistency of our method scales as $n=Ω(θ_{\min}^{-δη(η+1)-2}\log p)$, where p is the number of variables, $θ_{\min}$ is the minimum edge potential, $δ$ is the depth (i.e., …
Knowledge Graph Embedding with Electronic Health Records Data via Latent Graphical Block Model
本文提出潜在图形块模型（LGBM），通过语义嵌入向量和图形块结构从大规模EHR数据中高效推断特征间条件依赖关系并聚类同义特征，同时给出统计速率与块结构完全恢复的理论保证。
The topic of this paper is modeling and analyzing dependence in stochastic social networks. Using a latent variable block model allows the analysis of dependence between blocks via the analysis of a latent graphical model. Our approach to the analysis of the graphical model then is based on the idea underlying the neighborhood selection scheme put forward by Meinshausen and Bühlmann (2006). However, because of the latent nature of our model, estimates have to be used in lieu of the unobserved variables. This leads to a novel analysis of graphical models under uncertainty, in the spirit of Rose…
Trek-Based Parameter Identification for Linear Causal Models With Arbitrarily Structured Latent Variables
针对含任意结构潜变量的线性结构方程模型，提出基于潜子图的纯图论可识别性准则及可靠完备的整数线性规划算法，并支持转换模型以识别潜变量间效应。
Paired comparison data considered in this paper originate from the comparison of a large number N of individuals in couples. The dataset is a collection of results of contests between two individuals when each of them has faced n opponents, where n is much larger than N. Individual are represented by independent and identically distributed random parameters characterizing their abilities.The paper studies the maximum likelihood estimator of the parameters distribution. The analysis relies on the construction of a graphical model encoding conditional dependencies of the observations which are t…
Blessing of Dependence: Identifiability and Geometry of Discrete Models with Multiple Binary Latent Variables
本文提出代数技术研究含多个二元潜变量的离散模型可识别性，揭示依赖恩赐几何：最小条件下参数可识别当且仅当潜变量非独立，并可用于假设检验与模型设计。
Gaussian concentration graph models and covariance graph models are two classes of graphical models that are useful for uncovering latent dependence structures among multivariate variables. In the Bayesian literature, graphs are often determined through the use of priors over the space of positive definite matrices with fixed zeros, but these methods present daunting computational burdens in large problems. Motivated by the superior computational efficiency of continuous shrinkage priors for regression analysis, we propose a new framework for structure learning that is based on continuous spik…
Record linkage involves merging records in large, noisy databases to remove duplicate entities. It has become an important area because of its widespread occurrence in bibliometrics, public health, official statistics production, political science, and beyond. Traditional linkage methods directly linking records to one another are computationally infeasible as the number of records grows. As a result, it is increasingly common for researchers to treat record linkage as a clustering task, in which each latent entity is associated with one or more noisy database records. We critically assess per…
Latent tree models are graphical models defined on trees, in which only a subset of variables is observed. They were first discussed by Judea Pearl as tree-decomposable distributions to generalise star-decomposable distributions such as the latent class model. Latent tree models, or their submodels, are widely used in: phylogenetic analysis, network tomography, computer vision, causal modeling, and data clustering. They also contain other well-known classes of models like hidden Markov models, Brownian motion tree model, the Ising model on a tree, and many popular models used in phylogenetics.…
We present a graphical approach to deriving inequality constraints for directed acyclic graph (DAG) models, where some variables are unobserved. In particular we show that the observed distribution of a discrete model is always restricted if any two observed variables are neither adjacent in the graph, nor share a latent parent; this generalizes the well known instrumental inequality. The method also provides inequalities on interventional distributions, which can be used to bound causal effects. All these constraints are characterized in terms of a new graphical separation criterion, providin…
Directed graphical models specify noisy functional relationships among a collection of random variables. In the Gaussian case, each such model corresponds to a semi-algebraic set of positive definite covariance matrices. The set is given via parametrization, and much work has gone into obtaining an implicit description in terms of polynomial (in-)equalities. Implicit descriptions shed light on problems such as parameter identification, model equivalence, and constraint-based statistical inference. For models given by directed acyclic graphs, which represent settings where all relevant variable…
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