New methods and theory have recently been developed to nonparametrically estimate cumulative incidence functions for competing risks survival data subject to current status censoring. In particular, the limiting distribution of the nonparametric maximum likelihood estimator and a simplified "naive estimator" have been established under certain smoothness conditions. In this paper, we establish the large-sample behavior of these estimators in two additional models, namely when the observation time distribution has discrete support and when the observation times are grouped. These asymptotic results are applied to the construction of confidence intervals in the three different models. The methods are illustrated on two data sets regarding the cumulative incidence of (i) different types of menopause from a cross-sectional sample of women in the United States and (ii) subtype-specific HIV infection from a sero-prevalence study in injecting drug users in Thailand.
The aim of this paper is to estimate the density f of a random variable X when one has access to independent observations of the sum of K $\ge$ 2 independent copies of X. We provide a constructive estimator based on a suitable definition of the logarithm of the empirical characteristic function.We propose a new strategy for the data driven choice of the cut-off parameter. The adaptive estimator is proven to be minimax-optimal up to some logarithmic loss. A numerical study illustrates the performances of the method. Moreover, we discuss the fact that the definition of the estimator applies in a…
Nonparametric Efficient Estimation of Dynamic Treatment Regimes with Competing Risks
University of Minnesota（明尼苏达大学）；Edward Hines Jr. VA Hospital（爱德华·海恩斯少将退伍军人医院）；Augusta University（奥古斯塔大学）；Veterans Affairs Health Care System（退伍军人保健系统）；HealthPartners Institute（健康伙伴研究所）
Competing risks model time to first event and type of first event. An example from hospital epidemiology is the incidence of hospital-acquired infection, which has to account for hospital discharge of non-infected patients as a competing risk. An illness-death model would allow to further study hospital outcomes of infected patients. Such a model typically relies on a Markov assumption. However, it is conceivable that the future course of an infected patient does not only depend on the time since hospital admission and current infection status but also on the time since infection. We demonstra…
Consider measured positions of the paleomagnetic north pole over time. Each measured position may be viewed as a direction, expressed as a unit vector in three dimensions and incorporating some error. In this sequence, the true directions are expected to be close to one another at nearby times. A simple trend estimator that respects the geometry of the sphere is to compute a running average over the time-ordered observed direction vectors, then normalize these average vectors to unit length. This paper treats a considerably richer class of competing directional trend estimators that respect sp…
Competing risk data appear widely in modern biomedical research. Cause-specific hazard models are often used to deal with competing risk data in the past two decades. There is no current study on the kernel likelihood method for the cause-specific hazard model with time-varying coefficients. We propose to use the local partial log-likelihood approach for nonparametric time-varying coefficient estimation. Simulation studies demonstrate that our proposed nonparametric kernel estimator has a good performance under assumed finite sample settings. Finally, we apply the proposed method to analyze a …
Data on a continuous variable are often summarized by means of histograms or displayed in tabular format: the range of data is partitioned into consecutive interval classes and the number of observations falling within each class is provided to the analyst. Computations can then be carried in a nonparametric way by assuming a uniform distribution of the variable within each partitioning class, by concentrating all the observed values in the center, or by spreading them to the extremities. Smoothing methods can also be applied to estimate the underlying density or a parametric model can be fitt…
We study the uniform convergence rate of the nonparametric maximum likelihood estimator (MLE) for the sub-distribution functions in the current status data with competing risks model. It is known that the MLE have $L^2$-norm convergence rate $O_P(n^{-1/3})$ in the absolutely continuous case, but there is no arguments for the same rate of uniform convergence. We specify conditions for the uniform convergence rate $O_P(n^{-1/3}\log^{1/3} n)$ of the MLE for the sub-distribution functions of competing risks on finite intervals. The obtained result refines known uniform convergence rate in the part…
Vector autoregression model is ubiquitous in classical time series data analysis. With the rapid advance of social network sites, time series data over latent graph is becoming increasingly popular. In this paper, we develop a novel Bayesian grouped network autoregression model to simultaneously estimate group information (number of groups and group configurations) and group-wise parameters. Specifically, a graphically assisted Chinese restaurant process is incorporated under framework of the network autoregression model to improve the statistical inference performance. An efficient Markov cha…
We propose a novel approach for density estimation called histogram trend filtering. Our estimator arises from looking at surrogate Poisson model for counts of observations in a partition of the support of the data. We begin by showing consistency for a variational estimator for this density estimation problem. We then study a discrete estimator that can be efficiently found via convex optimization. We show that the estimator enjoys strong statistical guarantees, yet is much more practical and computationally efficient than other estimators that enjoy similar guarantees. Finally, in our simula…
Nonparametric estimation of a state entry time distribution conditional on a "past" state occupation in a progressive multistate model with current status data
Division of Cancer Epidemiology and Genetics, National Cancer Institute（癌症流行病学与遗传学系，国家癌症研究所）；Department of Biostatistics, University of Florida（生物统计学系，佛罗里达大学）
Interval-censored competing risks data arise when each study subject may experience an event or failure from one of several causes and the failure time is not observed exactly but rather known to lie in an interval between two successive examinations. We formulate the effects of possibly time-varying covariates on the cumulative incidence or sub-distribution function (i.e., the marginal probability of failure from a particular cause) of competing risks through a broad class of semiparametric regression models that captures both proportional and non-proportional hazards structures for the sub-d…
Fiducial Inference, introduced by Fisher in the 1930s, has a long history, which at times aroused passionate disagreements. However, its application has been largely confined to relatively simple parametric problems. In this paper, we present what might be the first time fiducial inference, as generalized by Hannig et al. (2016), is systematically applied to estimation of a nonparametric survival function under right censoring. We find that the resulting fiducial distribution gives rise to surprisingly good statistical procedures applicable to both one sample and two sample problems. In partic…
Change point analysis has applications in a wide variety of fields. The general problem concerns the inference of a change in distribution for a set of time-ordered observations. Sequential detection is an online version in which new data is continually arriving and is analyzed adaptively. We are concerned with the related, but distinct, offline version, in which retrospective analysis of an entire sequence is performed. For a set of multivariate observations of arbitrary dimension, we consider nonparametric estimation of both the number of change points and the positions at which they occur. …
Average Cause-Specific Hazard: A Censoring-Invariant Measure of Event Burden Under Competing Risks
Harvard T.H. Chan School of Public Health（哈佛陈曾熙公共卫生学院）；Stanford University（斯坦福大学）；Dana Farber Cancer Institute（达纳法伯癌症研究院）；Memorial Sloan Kettering Cancer Center（纪念斯隆-凯特琳癌症中心）
The cumulative incidence is the probability of failure from the cause of interest over a certain time period in the presence of other risks. A semiparametric regression model proposed by Fine and Gray (1999) has become the method of choice for formulating the effects of covariates on the cumulative incidence. Its estimation, however, requires modeling of the censoring distribution and is not statistically efficient. In this paper, we present a broad class of semiparametric transformation models which extends the Fine and Gray model, and we allow for unknown causes of failure. We derive the non…
We develop a Bayesian nonparametric (BNP) approach to evaluate the causal effect of treatment in a randomized trial where a nonterminal event may be censored by a terminal event, but not vice versa (i.e., semi-competing risks). Based on the idea of principal stratification, we define a novel estimand for the causal effect of treatment on the nonterminal event. We introduce identification assumptions, indexed by a sensitivity parameter, and show how to draw inference using our BNP approach. We conduct simulation studies and illustrate our methodology using data from a brain cancer trial.
Structural change detection problems are often encountered in analytics and econometrics, where the performance of a model can be significantly affected by unforeseen changes in the underlying relationships. Although these problems have a comparatively long history in statistics, the number of studies done in the context of multivariate data under nonparametric settings is still small. In this paper, we propose a consistent method for detecting multiple structural changes in a system of related regressions over a large dimensional variable space. In most applications, practitioners also do not…
In this paper, we introduce two robust, nonparametric methods for multiple change-point detection in the variability of a multivariate sequence of observations. We demonstrate that changes in ranks generated from data depth functions can be used to detect changes in the variability of a sequence of multivariate observations. In order to detect more than one change, the first algorithm uses methods similar to that of wild-binary segmentation. The second algorithm estimates change-points by maximizing a penalized version of the classical Kruskal Wallis ANOVA test statistic. We show that this obj…
This paper develops tools to characterize how species are affected by environmental variability, based on a functional single index model relating a response such as growth rate or survival to environmental conditions. In ecology, the curvature of such responses are used, via Jensen's inequality, to determine whether environmental variability is harmful or beneficial, and differing nonlinear responses to environmental variability can contribute to the coexistence of competing species. Here, we address estimation and inference for these models with observational data on individual responses to …
We propose an empirical likelihood ratio test for nonparametric model selection, where the competing models may be nested, nonnested, overlapping, misspecified, or correctly specified. It compares the squared prediction errors of models based on the cross-validation and allows for heteroscedasticity of the errors of models. We develop its asymptotic distributions for comparing additive models and varying-coefficient models and extend it to test significance of variables in additive models with massive data. The method is applicable to model selection among supervised learning models. To facili…
Many time-to-event studies are complicated by the presence of competing risks. Such data are often analyzed using Cox models for the cause specific hazard function or Fine-Gray models for the subdistribution hazard. In practice regression relationships in competing risks data with either strategy are often complex and may include nonlinear functions of covariates, interactions, high-dimensional parameter spaces and nonproportional cause specific or subdistribution hazards. Model misspecification can lead to poor predictive performance. To address these issues, we propose a novel approach to fl…
We propose a roughness regularization approach in making nonparametric inference for generalized functional linear models. In a reproducing kernel Hilbert space framework, we construct asymptotically valid confidence intervals for regression mean, prediction intervals for future response and various statistical procedures for hypothesis testing. In particular, one procedure for testing global behaviors of the slope function is adaptive to the smoothness of the slope function and to the structure of the predictors. As a by-product, a new type of Wilks phenomenon [Ann. Math. Stat. 9 (1938) 60-62…
Doubly Robust Machine Learning for Population Size Estimation with Missing Covariates: Application to Gaza Conflict Mortality
Center for Data Science New York University（纽约大学数据科学中心）；Department of Statistics & Data Science Carnegie Mellon University（卡内基梅隆大学统计与数据科学系）；Department of Medical Statistics London School of Hygiene and Tropical Medicine（伦敦卫生与热带医学院医学统计学系）
This project was motivated by a dialysis study in northern Taiwan. Dialysis patients, after shunt implantation, may experience two types ("acute" or "non-acute") of shunt thrombosis, both of which may recur. We formulate the problem under the framework of recurrent events data in the presence of competing risks. In particular we focus on marginal inference for the gap time variable of specific type. The functions of interest are the cumulative incidence function and cause-specific hazard function. The major challenge of nonparametric inference is the problem of induced dependent censoring. We …
This paper discusses endogenous treatment models with duration outcomes, competing risks and random right censoring. The endogeneity issue is solved using a discrete instrumental variable. We show that the competing risks model generates a non-parametric quantile instrumental regression problem. The cause-specific cumulative incidence, the cause-specific hazard and the subdistribution hazard can be recovered from the regression function. A distinguishing feature of the model is that censoring and competing risks prevent identification at some quantiles. We characterize the set of quantiles for…
McCombs School of Business（麦克库姆斯商学院）；The University of Texas at Austin（德克萨斯大学奥斯汀分校）
We propose Lomax delegate racing (LDR) to explicitly model the mechanism of survival under competing risks and to interpret how the covariates accelerate or decelerate the time to event. LDR explains non-monotonic covariate effects by racing a potentially infinite number of sub-risks, and consequently relaxes the ubiquitous proportional-hazards assumption which may be too restrictive. Moreover, LDR is naturally able to model not only censoring, but also missing event times or event types. For inference, we develop a Gibbs sampler under data augmentation for moderately sized data, along with a …
We consider the problem of testing for treatment effect heterogeneity in observational studies, and propose a nonparametric test based on multisample U-statistics. To account for potential confounders, we use reweighted data where the weights are determined by estimated propensity scores. The proposed method does not require any parametric assumptions on the outcomes and bypasses the need for modeling the treatment effect for each study subgroup. We establish the asymptotic normality for the test statistic, and demonstrate its superior numerical performance over several competing approaches vi…
In this paper we introduce the subdistribution beta-Stacy process, a novel Bayesian nonparametric process prior for subdistribution functions useful for the analysis of competing risks data. In particular, we i) characterize this process from a predictive perspective by means of an urn model with reinforcement, ii) show that it is conjugate with respect to right-censored data, and iii) highlight its relations with other prior processes for competing risks data. Additionally, we consider the subdistribution beta-Stacy process prior in a nonparametric regression model for competing risks data wh…
Basketball shot location data provide valuable summary information regarding players to coaches, sports analysts, fans, statisticians, as well as players themselves. Represented by spatial points, such data are naturally analyzed with spatial point process models. We present a novel nonparametric Bayesian method for learning the underlying intensity surface built upon a combination of Dirichlet process and Markov random field. Our method has the advantage of effectively encouraging local spatial homogeneity when estimating a globally heterogeneous intensity surface. Posterior inferences are pe…
This paper focuses on quantifying and estimating the predictive accuracy of prognostic models for time-to-event outcomes with competing events. We consider the time-dependent discrimination and calibration metrics, including the receiver operating characteristics curve and the Brier score, in the context of competing risks. To address censoring, we propose a unified nonparametric estimation framework for both discrimination and calibration measures, by weighting the censored subjects with the conditional probability of the event of interest given the observed data. We demonstrate through simul…
We propose the interval censored recursive forests (ICRF) which is an iterative tree ensemble method for interval censored survival data. This nonparametric regression estimator makes the best use of censored information by iteratively updating the survival estimate, and can be viewed as a self-consistent estimator with convergence monitored using out-of-bag samples. Splitting rules optimized for interval censored data are developed and kernel-smoothing is applied. The ICRF displays the highest prediction accuracy among competing nonparametric methods in most of the simulations and in an appli…
We develop a scalable multi-step Monte Carlo algorithm for inference under a large class of nonparametric Bayesian models for clustering and classification. Each step is "embarrassingly parallel" and can be implemented using the same Markov chain Monte Carlo sampler. The simplicity and generality of our approach makes inference for a wide range of Bayesian nonparametric mixture models applicable to large datasets. Specifically, we apply the approach to inference under a product partition model with regression on covariates. We show results for inference with two motivating data sets: a large s…
Nonparametric efficient causal estimation of the intervention-specific expected number of recurrent events with continuous-time targeted maximum likelihood and highly adaptive lasso estimation
Genetic data are frequently categorical and have complex dependence structures that are not always well understood. For this reason, clustering and classification based on genetic data, while highly relevant, are challenging statistical problems. Here we consider a highly versatile U-statistics based approach built on dissimilarities between pairs of data points for nonparametric clustering. In this work we propose statistical tests to assess group homogeneity taking into account the multiple testing issues, and a clustering algorithm based on dissimilarities within and between groups that hig…
This paper presents a practical and simple fully nonparametric multivariate smoothing procedure that adapts to the underlying smoothness of the true regression function. Our estimator is easily computed by successive application of existing base smoothers (without the need of selecting an optimal smoothing parameter), such as thin-plate spline or kernel smoothers. The resulting smoother has better out of sample predictive capabilities than the underlying base smoother, or competing structurally constrained models (GAM) for small dimension (3 < d < 8) and moderate sample size (n < 800). Moreove…
