Many complex networks are described by directed links; in such networks, a link represents, for example, the control of one node over the other node or unidirectional information flows. Some centrality measures are used to determine the relative importance of nodes specifically in directed networks. We analyze such a centrality measure called the influence. The influence represents the importance of nodes in various dynamics such as synchronization, evolutionary dynamics, random walk, and social dynamics. We analytically calculate the influence in various networks, including directed multipartite networks and a directed version of the Watts-Strogatz small-world network. The global properties of networks such as hierarchy and position of shortcuts, rather than local properties of the nodes, such as the degree, are shown to be the chief determinants of the influence of nodes in many cases. The developed method is also applicable to the calculation of the PageRank. We also numerically show that in a coupled oscillator system, the threshold for entrainment by a pacemaker is low when the pacemaker is placed on influential nodes. For a type of random network, the analytically derived threshold is approximately equal to the inverse of the influence. We numerically show that this relationship also holds true in a random scale-free network and a neural network.
Many systems, ranging from biological and engineering systems to social systems, can be modeled as directed networks, with links representing directed interaction between two nodes. To assess the importance of a node in a directed network, various centrality measures based on different criteria have been proposed. However, calculating the centrality of a node is often difficult because of the overwhelming size of the network or the incomplete information about the network. Thus, developing an approximation method for estimating centrality measures is needed. In this study, we focus on modular …
The trophic levels of nodes in directed networks can reveal their functional properties. Moreover, the trophic coherence of a network, defined in terms of trophic levels, is related to properties such as cycle structure, stability and percolation. The standard definition of trophic levels, however, borrowed from ecology, suffers from drawbacks such as requiring source nodes, which limit its applicability. Here we propose a simple new definition of trophic level that can be computed on any directed network. We demonstrate how the method can identify node function in examples including ecosystem…
The energy needed in controlling a complex network is a problem of practical importance. Recent works have focused on the reduction of control energy either via strategic placement of driver nodes, or by decreasing the cardinality of nodes to be controlled. However, optimizing control energy with respect to target nodes selection has yet been considered. In this work, we propose an iterative method based on Stiefel manifold optimization of selectable target node matrix to reduce control energy. We derive the matrix derivative gradient needed for the search algorithm in a general way, and searc…
Network embedding is a fervid topic in current networks science and observes that most real complex systems can be embedded in hidden metrics space and emerge as the geometrical property, where the geometric distance between nodes determines the likelihood of links connected. Among those, hyperbolic space associated with the structural organization of many real complex systems, it has thus received extensive attention. However, the majority of methods and measurements, recently developed, less take these features into consideration for the asymmetry of links. Here, we discuss how to multiplex …
The self-consistent probabilistic approach has proven itself powerful in studying the percolation behavior of interdependent or multiplex networks without tracking the percolation process through each cascading step. In order to understand how directed dependency links impact criticality, we employ this approach to study the percolation properties of networks with both undirected connectivity links and directed dependency links. We find that when a random network with a given degree distribution undergoes a second-order phase transition, the critical point and the unstable regime surrounding t…
Directed networks such as gene regulation networks and neural networks are connected by arcs (directed links). The nodes in a directed network are often strongly interwound by a huge number of directed cycles, which lead to complex information-processing dynamics in the network and make it highly challenging to infer the intrinsic direction of information flow. In this theoretical paper, based on the principle of minimum-feedback, we explore the node hierarchy of directed networks and distinguish feedforward and feedback arcs. Nearly optimal node hierarchy solutions, which minimize the number …
A new characteristic of paired nodes in a directed weight complex network is considered. A method (named as K-method) of the characteristics calculation for complex networks is proposed. The method is based on transforming the initial network with the subsequent application of the Kirchhoff rules. The scope of the method for sparse complex networks is proposed. The nodes of these complex networks are concepts of the real world, and the connections have a cause-effect character of the so-called "cognitive maps". Two new characteristics of concept nodes having a semantic interpretation are propo…
Critical nodes or "middlemen" have an essential place in both social and economic networks when considering the flow of information and trade. This paper extends the concept of critical nodes to directed networks. We identify strong and weak middlemen. Node contestability is introduced as a form of competition in networks; a duality between uncontested intermediaries and middlemen is established. The brokerage power of middlemen is formally expressed and a general algorithm is constructed to measure the brokerage power of each node from the networks adjacency matrix. Augmentations of the broke…
The arrangement of network nodes in hyperbolic spaces has become a widely studied problem, motivated by numerous results suggesting the existence of hidden metric spaces behind the structure of complex networks. Although several methods have already been developed for the hyperbolic embedding of undirected networks, approaches able to deal with directed networks are still in their infancy. Here, we propose a framework based on the dimension reduction of proximity matrices reflecting the network topology, coupled with a general conversion method transforming Euclidean node coordinates into hype…
We present exact analytical results for the distribution of shortest path lengths (DSPL) in a directed network model that grows by node duplication. Such models are useful in the study of the structure and growth dynamics of gene regulatory networks and scientific citation networks. Starting from an initial seed network, at each time step a random node, referred to as a mother node, is selected for duplication. Its daughter node is added to the network and duplicates each outgoing link of the mother node with probability $p$. In addition, the daughter node forms a directed link to the mother n…
Several recent studies of complex networks have suggested algorithms for locating network communities, also called modules or clusters, which are mostly defined as groups of nodes with dense internal connections. Along with the rapid development of these clustering techniques, the ability of revealing overlaps between communities has become very important as well. An efficient search technique for locating overlapping modules is provided by the Clique Percolation Method (CPM) and its extension to directed graphs, the CPMd algorithm. Here we investigate the centrality properties of directed mod…
Today, there exist many centrality measures for assessing the importance of nodes in a network as a function of their position and the underlying topology. One class of such measures builds on eigenvector centrality, where the importance of a node is derived from the importance of its neighboring nodes. For directed and weighted complex networks, where the nodes can carry some intrinsic property value, there have been centrality measures proposed that are variants of eigenvector centrality. However, these expressions all suffer from shortcomings. Here, an extension of such centrality measures …
We propose a continuum model for the degree distribution of directed networks in free and open-source software. The degree distributions of links in both the in-directed and out-directed dependency networks follow Zipf's law for the intermediate nodes, but the heavily linked nodes and the poorly linked nodes deviate from this trend and exhibit finite-size effects. The finite-size parameters make a quantitative distinction between the in-directed and out-directed networks. For the out-degree distribution, the initial condition for a dynamic evolution corresponds to the limiting count of the mos…
Signed directed social networks, in which the relationships between users can be either positive (indicating relations such as trust) or negative (indicating relations such as distrust), are increasingly common. Thus the interplay between positive and negative relationships in such networks has become an important research topic. Most recent investigations focus upon edge sign inference using structural balance theory or social status theory. Neither of these two theories, however, can explain an observed edge sign well when the two nodes connected by this edge do not share a common neighbor (…
Estimating distributions of node characteristics (labels) such as number of connections or citizenship of users in a social network via edge and node sampling is a vital part of the study of complex networks. Due to its low cost, sampling via a random walk (RW) has been proposed as an attractive solution to this task. Most RW methods assume either that the network is undirected or that walkers can traverse edges regardless of their direction. Some RW methods have been designed for directed networks where edges coming into a node are not directly observable. In this work, we propose Directed Un…
We study a two states opinion formation model driven by PageRank node influence and report an extensive numerical study on how PageRank affects collective opinion formations in large-scale empirical directed networks. In our model the opinion of a node can be updated by the sum of its neighbor nodes' opinions weighted by the node influence of the neighbor nodes at each step. We consider PageRank probability and its sublinear power as node influence measures and investigate evolution of opinion under various conditions. First, we observe that all networks reach steady state opinion after a cert…
Networks are a general language for representing relational information among objects. An effective way to model, reason about, and summarize networks, is to discover sets of nodes with common connectivity patterns. Such sets are commonly referred to as network communities. Research on network community detection has predominantly focused on identifying communities of densely connected nodes in undirected networks. In this paper we develop a novel overlapping community detection method that scales to networks of millions of nodes and edges and advances research along two dimensions: the connec…
Determining the relative importance of nodes in directed networks is important in, for example, ranking websites, publications, and sports teams, and for understanding signal flows in systems biology. A prevailing centrality measure in this respect is the PageRank. In this work, we focus on another class of centrality derived from the Laplacian of the network. We extend the Laplacian-based centrality, which has mainly been applied to strongly connected networks, to the case of general directed networks such that we can quantitatively compare arbitrary nodes. Toward this end, we adopt the idea …
The resilience of a complex interconnected system concerns the size of the macroscopic functioning node clusters after external perturbations based on a random or designed scheme. For a representation of the interconnected systems with directional or asymmetrical interactions among constituents, the directed network is a convenient choice. Yet how the interaction directions affect the network resilience still lacks thorough exploration. Here, we study the resilience of directed networks with a generalized $k$-core pruning process as a simple failure procedure based on both the in- and out-degr…
In usual scale-free networks of Barabasi-Albert type, a newly added node selects randomly m neighbors from the already existing network nodes, proportionally to the number of links these had before. Then the number N(k) of nodes with k links each decays as 1/k^gamma where gamma=3 is universal, i.e. independent of m. Now we use a limited directedness in the construction of the network, as a result of which the exponent gamma decreases from 3 to 2 for increasing m.
Modularity is one of the most prominent properties of real-world complex networks. Here, we address the issue of module identification in two important classes of networks: bipartite networks and directed unipartite networks. Nodes in bipartite networks are divided into two non-overlapping sets, and the links must have one end node from each set. Directed unipartite networks only have one type of nodes, but links have an origin and an end. We show that directed unipartite networks can be conviniently represented as bipartite networks for module identification purposes. We report a novel approa…
We introduce a framework for network analysis based on random walks on directed acyclic graphs where the probability of passing through a given node is the key ingredient. We illustrate its use in evaluating the mutual influence of nodes and discovering seminal papers in a citation network. We further introduce a new similarity metric and test it in a simple personalized recommendation process. This metric's performance is comparable to that of classical similarity metrics, thus further supporting the validity of our framework.
Many complex networks display a mesoscopic structure with groups of nodes sharing many links with the other nodes in their group and comparatively few with nodes of different groups. This feature is known as community structure and encodes precious information about the organization and the function of the nodes. Many algorithms have been proposed but it is not yet clear how they should be tested. Recently we have proposed a general class of undirected and unweighted benchmark graphs, with heterogenous distributions of node degree and community size. An increasing attention has been recently d…
This paper studies critical nodes or "middlemen" that intermediate flows in a directed network. The contestability of a node is introduced as a network topological concept of competitiveness meaning that an intermediary's role in the brokering of flows in the network can be substituted by a group of other nodes. We establish the equivalence of uncontested intermediaries and middlemen. The notion of node contestability gives rise to a measure that quantifies the control exercised by a middleman in a network. We present a comparison of this middleman centrality measures with relevant, establishe…
Coordinated human behaviour takes place within a diverse range of social organisational structures, which can be thought of as power structures with "managers" who influence "subordinates". A change in policy in one part of the organisation can cause cascades throughout the structure, which may or may not be desirable. As organisations change in size, complexity and structure, the system dynamics also change. Here, we consider majority rule dynamics on organisations modelled as hierarchical directed graphs, where the directed edges indicate influence. We utilise a topological measure called th…
Recent work studying triadic closure in undirected graphs has drawn attention to the distinction between measures that focus on the "center" node of a wedge (i.e., length-2 path) vs. measures that focus on the "initiator," a distinction with considerable consequences. Existing measures in directed graphs, meanwhile, have all been center-focused. In this work, we propose a family of eight directed closure coefficients that measure the frequency of triadic closure in directed graphs from the perspective of the node initiating closure. The eight coefficients correspond to different labelled wedge…
Bypass rewiring improves connectivity and robustness of networks against removal of nodes including failures and attacks. A concept of bypass rewiring on directed networks is proposed, and random bypass rewiring on infinite directed random networks is analytically and numerically investigated with simulations. As a result, random bypass rewiring makes infinite directed (undirected) random networks extremely robust for arbitrary occupation probabilities if and only if in-degree of every node except a fixed number of nodes is equal to the out-degree (every node except a finite number of nodes ha…
Consider a directed network with $K_{r}$ row communities and $K_{c}$ column communities. Previous works found that modeling directed networks in which all nodes have overlapping property requires $K_{r}=K_{c}$ for identifiability. In this paper, we propose an overlapping and nonoverlapping model to study directed networks in which row nodes have overlapping property while column nodes do not. The proposed model is identifiable when $K_{r}\leq K_{c}$. Meanwhile, we provide one identifiable model as extension of ONM to model directed networks with variation in node degree. Two spectral algorithm…
PageRank (PR) is a fundamental tool for assessing the relative importance of the nodes in a network. In this paper, we propose a measure, weighted PageRank (WPR), extended from the classical PR for weighted, directed networks with possible non-uniform node-specific information that is dependent or independent of network structure. A tuning parameter leveraging node degree and strength is introduced. An efficient algorithm based on R program has been developed for computing WPR in large-scale networks. We have tested the proposed WPR on widely used simulated network models, and found it outperf…
We present a framework to cluster nodes in directed networks according to their roles by combining Role-Based Similarity (RBS) and Markov Stability, two techniques based on flows. First we compute the RBS matrix, which contains the pairwise similarities between nodes according to the scaled number of in- and out-directed paths of different lengths. The weighted RBS similarity matrix is then transformed into an undirected similarity network using the Relaxed Minimum-Spanning Tree (RMST) algorithm, which uses the geometric structure of the RBS matrix to unblur the network, such that edges betwee…
We consider spectral methods that uncover hidden structures in directed networks. We establish and exploit connections between node reordering via (a) minimizing an objective function and (b) maximizing the likelihood of a random graph model. We focus on two existing spectral approaches that build and analyse Laplacian-style matrices via the minimization of frustration and trophic incoherence. These algorithms aim to reveal directed periodic and linear hierarchies, respectively. We show that reordering nodes using the two algorithms, or mapping them onto a specified lattice, is associated with…
We present exact results for the degree distribution in a directed network model that grows by node duplication (ND). Such models are useful in the study of the structure and growth dynamics of gene regulatory networks and scientific citation networks. Starting from an initial seed network, at each time step a random node, a mother node, is selected for duplication. Its daughter node is added to the network and duplicates each outgoing link of the mother node with probability p. In addition, the daughter node forms a directed link to the mother node itself. We obtain analytical results for the…
The widespread relevance of complex networks is a valuable tool in the analysis of a broad range of systems. There is a demand for tools which enable the extraction of meaningful information and allow the comparison between different systems. We present a novel measure of similarity between nodes in different networks as a generalization of the concept of self-similarity. A similarity matrix is assembled as the distance between feature vectors that contain the in and out paths of all lengths for each node. Hence, nodes operating in a similar flow environment are considered similar regardless o…
Dense regions in networks are an indicator of interesting and unusual information. However, most existing methods only consider simple, undirected, unweighted networks. Complex networks in the real-world often have rich information though: edges are asymmetrical and nodes/edges have categorical and numerical attributes. Finding dense subgraphs in such networks in accordance with this rich information is an important problem with many applications. Furthermore, most existing algorithms ignore the higher-order relationships (i.e., motifs) among the nodes. Motifs are shown to be helpful for dense…
The focus of this work is on estimation of the in-degree distribution in directed networks from sampling network nodes or edges. A number of sampling schemes are considered, including random sampling with and without replacement, and several approaches based on random walks with possible jumps. When sampling nodes, it is assumed that only the out-edges of that node are visible, that is, the in-degree of that node is not observed. The suggested estimation of the in-degree distribution is based on two approaches. The inversion approach exploits the relation between the original and sample in-deg…
This paper addresses the problem of identifying the topology of an unknown, weighted, directed network running a consensus dynamics. We propose a methodology to reconstruct the network topology from the dynamic response when the system is stimulated by a wide-sense stationary noise of unknown power spectral density. The method is based on a node-knockout, or grounding, procedure wherein the grounded node broadcasts zero without being eliminated from the network. In this direction, we measure the empirical cross-power spectral densities of the outputs between every pair of nodes for both ground…
The widespread relevance of increasingly complex networks requires methods to extract meaningful coarse-grained representations of such systems. For undirected graphs, standard community detection methods use criteria largely based on density of connections to provide such representations. We propose a method for grouping nodes in directed networks based on the role of the nodes in the network, understood in terms of patterns of incoming and outgoing flows. The role groupings are obtained through the clustering of a similarity matrix, formed by the distances between feature vectors that contai…
In this Letter, we empirically study the influence of reciprocal links, in order to understand its role in affecting the structure and function of directed social networks. Experimental results on two representative datesets, Sina Weibo and Douban, demonstrate that the reciprocal links indeed play a more important role than non-reciprocal ones in both spreading information and maintaining the network robustness. In particular, the information spreading process can be significantly enhanced by considering the reciprocal effect. In addition, reciprocal links are largely responsible for the conne…
In this paper, we propose two novel immunization strategies, i.e., combined immunization and duplex immunization, for SIS model in directed scale-free networks, and obtain the epidemic thresholds for them with linear and nonlinear infectivities. With the suggested two new strategies, the epidemic thresholds after immunization are greatly increased. For duplex immunization, we demonstrate that its performance is the best among all usual immunization schemes with respect to degree distribution. And for combined immunization scheme, we show that it is more effective than active immunization. Besi…
Some temporal networks, most notably citation networks, are naturally represented as directed acyclic graphs (DAGs). To detect communities in DAGs, we propose a modularity for DAGs by defining an appropriate null model (i.e., randomized network) respecting the order of nodes. We implement a spectral method to approximately maximize the proposed modularity measure and test the method on citation networks and other DAGs. We find that the attained values of the modularity for DAGs are similar for partitions that we obtain by maximizing the proposed modularity (designed for DAGs), the modularity f…
Identifying hierarchies and rankings of nodes in directed graphs is fundamental in many applications such as social network analysis, biology, economics, and finance. A recently proposed method identifies the hierarchy by finding the ordered partition of nodes which minimises a score function, termed agony. This function penalises the links violating the hierarchy in a way depending on the strength of the violation. To investigate the resolution of ranking hierarchies we introduce an ensemble of random graphs, the Ranked Stochastic Block Model. We find that agony may fail to identify hierarchi…
Liu et al recently proposed a minimum number of driver nodes needed to obtain full structural controllability over a directed network. Driver nodes are unmatched nodes, from which there are directed paths to all matched nodes. Their most important assertion is that a system's controllability is to a great extent encoded by the underlying network's degree distribution, $P(k_{in}, k_{out})$. Is the controllability of a network decided almost completely by the immediate neighbourhood of a node, while, even slightly distant nodes play no role at all? Motivated by the above question, in this commun…
Preferential attachment, homophily and, their consequences such as the glass ceiling effect have been well-studied in the context of undirected networks. However, the lack of an intuitive, theoretically tractable model of a directed, bi-populated~(i.e.,~containing two groups) network with variable levels of preferential attachment, homophily and growth dynamics~(e.g.,~the rate at which new nodes join, whether the new nodes mostly follow existing nodes or the existing nodes follow them, etc.) has largely prevented such consequences from being explored in the context of directed networks, where …
We present analytical results for the distribution of first hitting times of random walkers (RWs) on directed Erdős-Rényi (ER) networks. Starting from a random initial node, a random walker hops randomly along directed edges between adjacent nodes in the network. The path terminates either by the retracing scenario, when the walker enters a node which it has already visited before, or by the trapping scenario, when it becomes trapped in a dead-end node from which it cannot exit. The path length, namely the number of steps, $d$, pursued by the random walker from the initial node up to its termi…
The nodes in communication networks are possibly and most likely equipped with different recovery resources, which allow them to recover from a virus with different rates. In this paper, we aim to understand know how to allocate the limited recovery resources to efficiently prevent the spreading of epidemics. We study the susceptible-infected-susceptible (SIS) epidemic model on directed scale-free networks. In the classic SIS model, a susceptible node can be infected by an infected neighbor with the infection rate $β$ and an infected node can be recovered to be susceptible again with the recov…
A search technique locating network modules, i.e., internally densely connected groups of nodes in directed networks is introduced by extending the Clique Percolation Method originally proposed for undirected networks. After giving a suitable definition for directed modules we investigate their percolation transition in the Erdos-Renyi graph both analytically and numerically. We also analyse four real-world directed networks, including Google's own webpages, an email network, a word association graph and the transcriptional regulatory network of the yeast Saccharomyces cerevisiae. The obtained…
