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arXiv 0803.4060cond-mat.stat-mechphysics.chem-phphysics.comp-ph
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通过速度重标度的规范采样

Canonical sampling through velocity-rescaling

Giovanni Bussi, Davide Donadio, Michele Parrinello

摘要:

我们提出了一种新的分子动力学算法来抽样正则分布。在这种方法中,所有粒子的速度都通过适当选择的随机因子重新调整。该算法是正式的理由,它表明,尽管其随机性,仍然可以定义一个数量,保持不变的演变过程中。在数值应用中,这个量可以用来衡量采样的准确性。我们说明了这种新方法的性能Lennard-Jones和TIP 4P水模型在固相和液相。其性能优异,并且在很大程度上与恒温器参数以及动态特性无关。

英文摘要:

We present a new molecular dynamics algorithm for sampling the canonical distribution. In this approach the velocities of all the particles are rescaled by a properly chosen random factor. The algorithm is formally justified and it is shown that, in spite of its stochastic nature, a quantity can still be defined that remains constant during the evolution. In numerical applications this quantity can be used to measure the accuracy of the sampling. We illustrate the properties of this new method on Lennard-Jones and TIP4P water models in the solid and liquid phases. Its performance is excellent and largely independent on the thermostat parameter also with regard to the dynamic properties.

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