Nonnegative matrix factorization (NMF) has become a prominent technique for the analysis of image databases, text databases and other information retrieval and clustering applications. In this report, we define an exact version of NMF. Then we establish several results about exact NMF: (1) that it is equivalent to a problem in polyhedral combinatorics; (2) that it is NP-hard; and (3) that a polynomial-time local search heuristic exists.
In this work, we focus on connections between $K$-means clustering approaches and Orthogonal Nonnegative Matrix Factorization (ONMF) methods. We present a novel framework to extract the distance measure and the centroids of the $K$-means method based on first order conditions of the considered ONMF objective function, which exploits the classical alternating minimization schemes of Nonnegative Matrix Factorization (NMF) algorithms. While this technique is characterized by a simple derivation procedure, it can also be applied to non-standard regularized ONMF models. Using this framework, we con…
Uppsala University（乌普萨拉大学）；Research Institutes of Sweden (RISE)（瑞典研究机构（RISE））
We describe a graph-based neural acceleration technique for nonnegative matrix factorization that builds upon a connection between matrices and bipartite graphs that is well-known in certain fields, e.g., sparse linear algebra, but has not yet been exploited to design graph neural networks for matrix computations. We first consider low-rank factorization more broadly and propose a graph representation of the problem suited for graph neural networks. Then, we focus on the task of nonnegative matrix factorization and propose a graph neural network that interleaves bipartite self-attention layers…
Harvey Mudd College（哈维穆德学院）；Colorado State Univ.（科罗拉多州立大学）；Univ. of Illinois Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；Cal. State Univ. Channel Islands（加州州立大学海峡群岛分校）；Wofford College（沃福德学院）；New York Univ.（纽约大学）；Univ. of Alabama（阿拉巴马大学）；Univ. of Cal., Los Angeles（加州大学洛杉矶分校）；Boston Medical Cent.（波士顿医疗中心）；Southern Methodist Univ.（南卫理公会大学）；Occidental College（西方学院）
We propose new semi-supervised nonnegative matrix factorization (SSNMF) models for document classification and provide motivation for these models as maximum likelihood estimators. The proposed SSNMF models simultaneously provide both a topic model and a model for classification, thereby offering highly interpretable classification results. We derive training methods using multiplicative updates for each new model, and demonstrate the application of these models to single-label and multi-label document classification, although the models are flexible to other supervised learning tasks such as …
Nonnegative matrix factorization (NMF) is a prominent technique for data dimensionality reduction that has been widely used for text mining, computer vision, pattern discovery, and bioinformatics. In this paper, a framework called ARkNLS (Alternating Rank-k Nonnegativity constrained Least Squares) is proposed for computing NMF. First, a recursive formula for the solution of the rank-k nonnegativity-constrained least squares (NLS) is established. This recursive formula can be used to derive the closed-form solution for the Rank-k NLS problem for any integer k $\ge$ 1. As a result, each subprobl…
Université de Mons（蒙斯大学）；Université de Rennes（雷恩大学）；INRIA（法国国家信息与自动化研究所）；CNRS（法国国家科学研究中心）；IRISA（雷恩第一大学计算机科学研究所）
This paper is concerned with improving the empirical convergence speed of block-coordinate descent algorithms for approximate nonnegative tensor factorization (NTF). We propose an extrapolation strategy in-between block updates, referred to as heuristic extrapolation with restarts (HER). HER significantly accelerates the empirical convergence speed of most existing block-coordinate algorithms for dense NTF, in particular for challenging computational scenarios, while requiring a negligible additional computational budget.
There is an emerging interest in tensor factorization applications in big-data analytics and machine learning. To speed up the factorization of extra-large datasets, organized in multidimensional arrays (aka tensors), easy to compute compression-based tensor representations, such as Tucker and Tensor Train formats, are used to approximate the initial large-tensor. Further, tensor factorization is used to extract latent features that can facilitate discoveries of new mechanisms and signatures hidden in the data, where the explainability of the latent features is of principal importance. Nonnega…
Center for Industrial Mathematics（工业数学中心）；University of Bremen（不来梅大学）
Classical approaches in cluster analysis are typically based on a feature space analysis. However, many applications lead to datasets with additional spatial information and a ground truth with spatially coherent classes, which will not necessarily be reconstructed well by standard clustering methods. Motivated by applications in hyperspectral imaging, we introduce in this work clustering models based on orthogonal nonnegative matrix factorization, which include an additional total variation (TV) regularization procedure on the cluster membership matrix to enforce the needed spatial coherence …
Central China Normal University（华中师范大学）；The University of Hong Kong（香港大学）
In this paper, we study the sparse nonnegative tensor factorization and completion problem from partial and noisy observations for third-order tensors. Because of sparsity and nonnegativity, the underlying tensor is decomposed into the tensor-tensor product of one sparse nonnegative tensor and one nonnegative tensor. We propose to minimize the sum of the maximum likelihood estimation for the observations with nonnegativity constraints and the tensor $\ell_0$ norm for the sparse factor. We show that the error bounds of the estimator of the proposed model can be established under general noise o…
Guangdong University of Technology（广东工业大学）；RIKEN（理化学研究所）
For the high dimensional data representation, nonnegative tensor ring (NTR) decomposition equipped with manifold learning has become a promising model to exploit the multi-dimensional structure and extract the feature from tensor data. However, the existing methods such as graph regularized tensor ring decomposition (GNTR) only models the pair-wise similarities of objects. For tensor data with complex manifold structure, the graph can not exactly construct similarity relationships. In this paper, in order to effectively utilize the higher-dimensional and complicated similarities among objects,…
Scalable methods for nonnegative matrix factorizations of near-separable tall-and-skinny matrices
Stanford University（斯坦福大学）；Purdue University（普渡大学）；Purdue University Institute for Computational and Bindley Biosciences Center（普渡大学计算与Bindley生物科学中心）；Computer Science Mathematical Engineering（计算机科学数学工程）
Given a nonnegative matrix factorization, $R$, and a factorization rank, $r$, Exact nonnegative matrix factorization (Exact NMF) decomposes $R$ as the product of two nonnegative matrices, $C$ and $S$ with $r$ columns, such as $R = CS^\top$. A central research topic in the literature is the conditions under which such a decomposition is unique/identifiable, up to trivial ambiguities. In this paper, we focus on partial identifiability, that is, the uniqueness of a subset of columns of $C$ and $S$. We start our investigations with the data-based uniqueness (DBU) theorem from the chemometrics lite…
