医学 AI

Combining human cell line transcriptome analysis and Bayesian inference to build trustworthy machine learning models for prediction of animal toxicity in drug development

Laura-Jayne Gardiner, Anna Paola Carrieri, Jenny Wilshaw, Stephen Checkley, Edward O Pyzer-Knapp, Ritesh Krishna

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Machine Learning for Health (ML4H) at NeurIPS 2019 - Extended Abstract

INtERAcT: Interaction Network Inference from Vector Representations of Words

Matteo Manica, Roland Mathis, María Rodríguez Martínez

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Journal ref Nature Machine Intelligence (2019)

Tasks, Techniques, and Tools for Genomic Data Visualization

Sabrina Nusrat, Theresa Harbig, Nils Gehlenborg

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 25 pages, 21 figures, 6 tables

Mapping the Human Body at Cellular Resolution -- The NIH Common Fund Human BioMolecular Atlas Program

Michael P Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A Nystrom, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L Roy, Ajay Pillai, Marishka Brown, Zorina S Galis

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 20 pages, 3 figures

POSITION PAPER: Credibility of In Silico Trial Technologies: A Theoretical Framing

Marco Viceconti, Miguel A. Juárez, Cristina Curreli, Marzio Pennisi, Giulia Russo, Francesco Pappalardo

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 11 pages

Incorporating biological structure into machine learning models in biomedicine

Jake Crawford, Casey S. Greene

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Comments welcome at https://greenelab.github.io/biopriors-review/

Real-time Monitoring of Cellular Cultures with Electrolyte-gated Carbon Nanotube Transistors

Francesca Scuratti, Giorgio E. Bonacchini, Caterina Bossio, Jorge M. Salazar-Rios, Wytse Talsma, Maria A. Loi, Maria R. Antognazza, Mario Caironi

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

The lubricity of mucin solutions is robust toward changes in physiological conditions

Jian Song, Benjamin Winkeljann, Oliver Lieleg

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Journal ref ACS Appl. Bio Mater. 2019, 2, 8, 3448-3457

An Atomistic First-Principles Density Functional Theory Model for Single Layer Dry \textit{Stratum Corneum}

Erika T. Sato, Neila Machado, Daniele R. Araújo, Luciana C. Paulino, Herculano Martinho

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Influence of Initial Residual Stress on Growth and Pattern Creation for a Layered Aorta

Yangkun Du, Chaofeng Lü, Michel Destrade, Weiqiu Chen

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Role of Ligand Conformation on Nanoparticle-Protein Interactions

Federica Simonelli, Giulia Rossi, Luca Monticelli

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Competing mechanisms of stress-assisted diffusivity and stretch-activated currents in cardiac electromechanics

A. Loppini, A. Gizzi, R. Ruiz Baier, C. Cherubini, F. Fenton, S. Filippi

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Journal ref Frontiers in Physiology (2018)

TiCoNE 2: A Composite Clustering Model for Robust Cluster Analyses on Noisy Data

Christian Wiwie, Richard Röttger, Jan Baumbach

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Information Theoretic Feature Transformation Learning for Brain Interfaces

Ozan Ozdenizci, Deniz Erdogmus

专题命中 生物医学文本 ：biomedical(comments,journal_ref)；分类 cs.LG、eess.SP

Comments Accepted for publication by IEEE Transactions on Biomedical Engineering

Journal ref IEEE Transactions on Biomedical Engineering, 2019

New thoughts on an old riddle: what determines genetic diversity within and between species?

Shi Huang

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 23 pages, 1 figure

Journal ref Genomics, 108: 3-10 (2016)

An increase in membrane cholesterol by graphene oxide disrupts calcium homeostasis in primary astrocytes

Mattia Bramini, Martina Chiacchiaretta, Andrea Armirotti, Anna Rocchi, Deepali D. Kale, Cristina Martin Jimenez, Ester Vázquez, Tiziano Bandiera, Stefano Ferroni, Fabrizia Cesca, Fabio Benfenati

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments This document is the unedited Author's version of a Submitted Work that was subsequently accepted for publication in Small after peer review. To access the final edited and published work see https://onlinelibrary.wiley.com/doi/10.1002/smll.201900147 40 pages, 6 main figures and 1 supplementary figure

Journal ref Small 2019, 1900147

Modeling and inference of spatio-temporal protein dynamics across brain networks

Sara Garbarino, Marco Lorenzi

专题命中 生物医学文本 ：pathology(abstract)；分类 q-bio

Data Lakes, Clouds and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data

Robert L. Grossman

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 28 pages, 4 figures

The Morphospace of Consciousness

Xerxes D. Arsiwalla, Ricard Sole, Clement Moulin-Frier, Ivan Herreros, Marti Sanchez-Fibla, Paul Verschure

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 23 pages, 3 figures

Public archives for biological image data

Jan Ellenberg, Jason R Swedlow, Mary Barlow, Charles E Cook, Ardan Patwardhan, Alvis Brazma, Ewan Birney

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 13 pages, 1 figure

Topotactic fibrillogenesis of freeze-casted microridged collagen scaffolds for 3D cell culture

Clément Rieu, Gervaise Mosser, Bernard Haye, Thibaud Coradin, Francisco M. Fernandes, Léa Trichet

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 34 pages, 7 figures, 4 supporting information figures

Frontiers in Pigment Cell and Melanoma Research

Fabian V. Filipp, Stanca Birlea, Marcus W. Bosenberg, Douglas Brash, Pamela B. Cassidy, Suzie Chen, John August D'Orazio, Mayumi Fujita, Boon-Kee Goh, Meenhard Herlyn, Arup K. Indra, Lionel Larue, Sancy A. Leachman, Caroline Le Poole, Feng Liu-Smith, Prashiela Manga, Lluis Montoliu, David A. Norris, Yiqun Shellman, Keiran S. M. Smalley, Richard A. Spritz, Richard A. Sturm, Susan M. Swetter, Tamara Terzian, Kazumasa Wakamatsu, Jeffrey S. Weber, Neil F. Box

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations

Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

A stochastic and dynamical view of pluripotency in mouse embryonic stem cells

Yen Ting Lin, Peter G. Hufton, Esther J. Lee, Davit A. Potoyan

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 11 pages, 7 figures

Probing single protein dynamics on liposome surfaces

Dong-Fei Ma, Chun-Hua Xu, Wen-Qing Hou, Chun-Yu Zhao, Lu Ma, Cong Liu, Jiajie Diao, Ying Lu, Ming Li

专题命中 生物医学文本 ：pathology(abstract)；分类 q-bio

Comments 4 pages, 4 figures

Parameter estimation of platelets deposition: Approximate Bayesian computation with high performance computing

Ritabrata Dutta, Bastien Chopard, Jonas Lätt, Frank Dubois, Karim Zouaoui Boudjeltia, Antonietta Mira

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

The sequencing and interpretation of the genome obtained from a Serbian individual

Wazim Mohammed Ismail, Kymberleigh A. Pagel, Vikas Pejaver, Simo V. Zhang, Sofia Casasa, Matthew Mort, David N. Cooper, Matthew W. Hahn, Predrag Radivojac

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments 18 pages, 2 figures

Prediction of a Gene Regulatory Network from Gene Expression Profiles With Linear Regression and Pearson Correlation Coefficient

Md Mehedi Hassan Onik, Shakhawat Ahmmed Nobin, Adnan Ferdous Ashrafi, Tareque Mohmud Chowdhury

专题命中 生物医学文本 ：diagnosis(abstract)；分类 q-bio

Comments In The 19Th International Conference On Computer And Information Technology, North South University, Dhaka -1229, Bangladesh, 2016, P. 327

A population genetic interpretation of GWAS findings for human quantitative traits

Yuval B. Simons, Kevin Bullaughey, Richard R. Hudson, Guy Sella

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Journal ref PLoS Biol 16(3): e2002985 (2018)

Microfluidics for Biofabrication

Shoji Takeuchi

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

Comments Nobel Symposium 162, Stockholm, Sweden, 2017 arXiv:1712.08369v1 report-id: Nobel162/2017/23