医学 AI

AAbAAC: An Annotated Corpus for Autoimmunity Information Extraction

AAbAAC：用于自身免疫信息抽取的标注语料库

Fabien Maury, Solène Grosdidier, Maud de Dieuleveult, Adrien Coulet

机构 * Inserm, Université Paris Cité, U1163 Institut Imagine（法国国家健康与医学研究院、巴黎西岱大学、U1163 想象研究所） ； Inria, Inserm, Université Paris Cité, U1346 HeKA（法国国家信息与自动化研究所、法国国家健康与医学研究院、巴黎西岱大学、U1346 HeKA） ； Freelance researcher（自由研究员） 纠错

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

AI总结 针对自身免疫领域信息抽取性能不足，构建了包含115篇PubMed摘要的AAbAAC语料库，手动标注实体和关系，通过微调NER模型验证了其有效性。

Journal ref BioNLP 2026 - 25th Workshop on Biomedical Natural Language Processing, ACL, Jul 2026, San Diego (CA), United States

A Novel Approach for a Smart IoMT-Based BAN for an Old Home Healthcare Monitoring System Using Starlink

一种基于星链的智能IoMT-BAN在老年人居家医疗监测系统中的新方法

Shermin Sultana Setu, Mst. Amena Akter Pinky, Md. Abdul Awal, Sheekar Banerjee, Ishtiak Al Mamoon

专题命中 生物医学文本 ：biomedical(abstract,comments)

AI总结 本研究提出了一种基于星链的智能IoMT-BAN系统，用于提升老年人居家医疗监测的远程监控和通信可靠性。

Comments IEEE Conference on Biomedical Engineering, Computer and Information Technology for Health 2025

Transmission infrared micro-spectroscopic study of individual human hair

人类单根头发的传输红外微光谱研究

Chen Li, Yuhan Du, Haonan Chen, Xinxin Han, Wenbin Wu, Xiufang Kong, Cheng Zhang, Xiang Yuan

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

AI总结 本研究通过传输红外微光谱技术分析单根人类头发，发现其波段过滤行为及光谱重量变化，揭示了头发皮质在炎症攻击中的微观结构变化。

Journal ref Journal of Biomedical Optics, 28(11), 116501. (2023)

Three-dimensional imaging of biological cells using surface plasmon coupled emission

Anik Mazumder, Mohammad Mozammal, Muhammad Anisuzzaman Talukder

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

Journal ref Journal of Biomedical Optics 27.10 (2022): 106002-106002

Machine Learning Fairness for Depression Detection using EEG Data

Angus Man Ho Kwok, Jiaee Cheong, Sinan Kalkan, Hatice Gunes

专题命中 生物医学文本 ：分类 cs.CV、cs.LG、eess.SP；biomedical(comments)

Comments To appear as part of the International Symposium on Biomedical Imaging (ISBI) 2025 proceedings

Polarization-artifact reduction and accuracy improvement of Jones-matrix polarization-sensitive optical coherence tomography by multi-focus averaging

Lida Zhu, Shuichi Makita, Junya Tamaoki, Yiqiang Zhu, Yiheng Lim, Makoto Kobayashi, Yoshiaki Yasuno

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

Journal ref Biomedical Optics Express 15, 256-276 (2024)

Learning to Generalize towards Unseen Domains via a Content-Aware Style Invariant Model for Disease Detection from Chest X-rays

Mohammad Zunaed, Md. Aynal Haque, Taufiq Hasan

专题命中 生物医学文本 ：分类 cs.CV、cs.LG、eess.IV；biomedical(comments)

Comments Accepted to IEEE Journal of Biomedical and Health Informatics

Current poisson's ratio values of finite element models are too low to consider soft tissues nearly-incompressible: illustration on the human heel region

Nolwenn Fougeron, Alessio Trebbi, Bethany Keenan, Yohan Payan, Gregory Chagnon

专题命中 生物医学文本 ：medical image(abstract)；biomedical(journal_ref)

Journal ref Computer Methods in Biomechanics and Biomedical Engineering, 2023, pp.1 - 10

A 21.3%-Efficiency Clipped-Sinusoid UWB Impulse Radio Transmitter with Simultaneous Inductive Powering and Data Receiving

Nima Soltani, Hamed M. Jafari, Karim Abdelhalim, Hossein Kassiri, Xilin Liu, Roman Genov

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

Journal ref IEEE Transactions on Biomedical Circuits and Systems, 2022

Multiresolution Dual-Polynomial Decomposition Approach for Optimized Characterization of Motor Intent in Myoelectric Control Systems

Oluwarotimi Williams Samuel, Mojisola Grace Asogbon, Rami Khushaba, Frank Kulwa, Guanglin Li

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

Journal ref IEEE Transactions on Biomedical Engineering, November 2022

HeartSpot: Privatized and Explainable Data Compression for Cardiomegaly Detection

Elvin Johnson, Shreshta Mohan, Alex Gaudio, Asim Smailagic, Christos Faloutsos, Aurélio Campilho

专题命中 生物医学文本 ：分类 cs.CV、cs.LG、eess.IV；biomedical(comments)

Comments Accepted to IEEE-EMBS International Conference on Biomedical and Health Informatics 2022. IEEE copyrights may apply

Access to care: analysis of the geographical distribution of healthcare using Linked Open Data

Selene Baez Santamaria, Emmanouil Manousogiannis, Guusje Boomgaard, Linh P. Tran, Zoltan Szlavik, Robert-Jan Sips

专题命中 生物医学文本 ：biomedical(abstract,comments)

Comments Accepted at 4th Workshop on Semantic Web solutions for large-scale biomedical data analytics (SeWeBMeDA-2020)

Deep Learning for Regularization Prediction in Diffeomorphic Image Registration

Jian Wang, Miaomiao Zhang

专题命中 生物医学文本 ：分类 cs.CV、cs.LG、eess.IV；biomedical(journal_ref)

Comments 20 pages, 8 figures

Journal ref Machine Learning for Biomedical Imaging (MELBA) 2022

Simulation of corrosion and mechanical degradation of additively manufactured Mg scaffolds in simulated body fluid

Mohammad Marvi-Mashhadi, Wahaaj Ali, Muzi Li, Carlos González, Javier LLorca

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

Journal ref Journal of the Mechanical Behavior of Biomedical Materials, 126, 104881, 2022

Automatic Estimation of Ulcerative Colitis Severity from Endoscopy Videos using Ordinal Multi-Instance Learning

Evan Schwab, Gabriela Oana Cula, Kristopher Standish, Stephen S. F. Yip, Aleksandar Stojmirovic, Louis Ghanem, Christel Chehoud

专题命中 生物医学文本 ：分类 cs.CV、cs.LG、eess.IV；biomedical(comments)

Comments *Co-Senior Authors. Accepted for publication in the Special Issue Journal of Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization and presented at the MICCAI 2021 AE-CAI $|$ CARE $|$ OR 2.0 Workshop

Strength, corrosion resistance and cellular response of interfaces in bioresorbable poly-lactic acid/Mg fiber composites for orthopedic applications

Wahaaj Ali, Mónica Echeverry-Rendón, Alexander Kopp, Carlos González, Javier LLorca

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

Journal ref Journal of the Mechanical Behavior of Biomedical Materials, 123, 104781, 2021

Electrothermal equivalent three-dimensional Finite Element Model of a single neuron

Ilaria Cinelli, Michel Destrade, Maeve Duffy, Peter McHugh

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

Journal ref IEEE Transactions on Biomedical Engineering, 65 (2018) 1373-1381

Learning deep representations for video-based intake gesture detection

Philipp V. Rouast, Marc T. P. Adam

专题命中 生物医学文本 ：分类 cs.CV、cs.LG、eess.IV；biomedical(comments)

Comments To be published in IEEE Journal of Biomedical and Health Informatics

A Learnable Despeckling Framework for Optical Coherence Tomography Images

Saba Adabi, Elaheh Rashedi, Hamed Mohebbi, Xue-wen Chen, Silvia Conforto, Mohammad. R. Nasiriavanaki

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

Comments under review

Journal ref Journal of Biomedical Optics -2018

Improving Correlation with Human Judgments by Integrating Semantic Similarity with Second--Order Vectors

Bridget T. McInnes, Ted Pedersen

专题命中 生物医学文本 ：biomedical(abstract,comments)

Comments 10 pages, Appears in the Proceedings of the 16th Workshop on Biomedical Natural Language Processing (BioNLP-2017), August 2017, Vancouver, BC

Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains

Simon Walk, Philipp Singer, Markus Strohmaier, Tania Tudorache, Mark A. Musen, Natalya F. Noy

专题命中 生物医学文本 ：biomedical(abstract,comments)

Comments Published in the Journal of Biomedical Informatics

NEMO: Extraction and normalization of organization names from PubMed affiliation strings

Siddhartha Jonnalagadda, Philip Topham

专题命中 生物医学文本 ：biomedical(abstract,journal_ref)

Journal ref Siddhartha Jonnalagadda, Philip Topham. NEMO: Extraction and normalization of organization names from PubMed affiliation strings. Journal of Biomedical Discovery and Collaboration, 2010 Oct 4;5:50-75

EIT Reconstruction Algorithms: Pitfalls, Challenges and Recent Developments

William R. B. Lionheart

专题命中 生物医学文本 ：biomedical(abstract,comments)

Comments A review paper for the 4th Workshop on Biomedical Applications of EIT, Manchester, UK, 2003

Journal ref Physiol. Meas. 25 (February 2004) 125-142

Automatic bioinformatic software named entity recognition from literature

从文献中自动识别生物信息学软件命名实体

Hao Xuan, Rithvij Pasupuleti, Ben Liu, Haishuo Sun, Jun Zhang, Zijun Yao, Cuncong Zhong

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

AI总结 本研究提出混合命名实体识别框架SNAIL，结合词汇与语义建模策略，在基准数据集及真实文献上识别生物信息学软件/数据库，性能优于现有方法，可用于大规模文献的资源元分析。

Phil Bourne (1953-2026): From Small Molecules to Big Data --- The Journey of a Multifaceted Visionary

菲尔·伯恩（1953-2026）：从小分子到大数据 —— 一位多面有远见者的历程

Andreas Prlić, Cameron Mura

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

AI总结 本文纪念2026年去世的菲尔·伯恩，回顾其从小分子到大数据的跨尺度科学生涯，提及他获国际计算生物学学会2026年度杰出服务奖却未能领奖，以及他在多领域的奠基贡献与纪念网站的相关信息。

Comments 8 pages, 3 figures

EpiBench: Can LLMs Understand Epitopes for Antibody Drug Discovery?

EpiBench：大型语言模型能否为抗体药物发现表位？

Zirui Wang, Jiaqi Wang, Qinghan Wang, Yuzhi Xu, Gang Du, Tingjun Hou, Odin Zhang

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

AI总结 本研究提出用于评估大型语言模型表位推理能力的基准EpiBench，发现现有通用LLMs在抗体药物发现相关表位推理上仍存局限，为改进序列感知型生物医学LLMs提供了测试平台。

AutoProteinEngine: A Large Language Model Driven Agent Framework for Multimodal AutoML in Protein Engineering

AutoProteinEngine：一种用于蛋白质工程多模态自动机器学习的大语言模型驱动智能体框架

Yungeng Liu, Zan Chen, Yu Guang Wang, Yiqing Shen

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

AI总结 研究针对生物学家缺乏计算知识难以应用深度学习开展蛋白质工程的问题，提出AutoProteinEngine框架，集成LLMs与AutoML，经两项任务验证其性能优于传统方法，降低了深度学习应用门槛。

Omics Data Discovery Agents: Agent-Supported Retrieval, Reanalysis, and Synthesis of Published Omics Data

组学数据发现代理

Alexandre Hutton, Jesse G. Meyer

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

AI总结 本文提出了一种基于代理的框架，通过自动化提取和处理组学数据，实现对生物医学文献的可执行查询和大规模数据重用。

Enhancing Phenotype Recognition in Clinical Notes Using Large Language Models: PhenoBCBERT and PhenoGPT

利用大型语言模型增强临床笔记中的表型识别：PhenoBCBERT和PhenoGPT

Jingye Yang, Cong Liu, Wendy Deng, Da Wu, Chunhua Weng, Yunyun Zhou, Kai Wang

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

AI总结 本研究提出PhenoBCBERT和PhenoGPT两种模型，利用大型语言模型提升临床笔记中表型术语的自动识别与提取，从而推动疾病相关生物学研究。

Threat Vectors and the State of the Art in Defense Methods for Security in Neurotechnology

神经技术安全防御方法中的威胁向量与现状

Bryce-Allen Bagley, Nathaniel Rose, Quintus Kilbourn, Matthew Canham

专题命中 生物医学文本 ：biomedical(abstract)；分类 q-bio

AI总结 本文针对脑机接口安全研发滞后问题，回顾神经安全技术现状，全面调查BCI系统安全威胁，给出可应用于弥补神经安全差距的现有方法建议，助力提升神经技术安全。