医学 AI

Benchmarking Class Activation Map Methods for Explainable Brain Hemorrhage Classification on Hemorica Dataset

在Hemorica数据集上基于类激活图方法的可解释性脑出血分类基准测试

Z. Rafati, M. Hoseyni, J. Khoramdel, A. Nikoofard

机构 * Faculty of Computer Engineering, K. N. Toosi University of Technology（计算机工程学院，K.N.托菲大学） ； Faculty of Electrical Engineering, K. N. Toosi University of Technology（电气工程学院，K.N.托菲大学） ； Faculty of Mechanical Engineering, Tarbiat Modares University（机械工程学院，塔里比亚特莫达res大学） 纠错

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.CV、q-bio

AI总结 本研究通过在Hemorica数据集上评估九种CAM算法，发现AblationCAM在像素级Dice和IoU指标上表现最佳，为脑出血分类的可解释性提供了新的基准。

Evaluation and Implementation of Machine Learning Algorithms to Predict Early Detection of Kidney and Heart Disease in Diabetic Patients

Syed Ibad Hasnain

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.LG、q-bio

Comments This thesis was completed under the supervision of Prof. Dr. Darakhshan Saleem. I am deeply grateful for her mentorship throughout my graduate studies

TrialMatchAI: An End-to-End AI-powered Clinical Trial Recommendation System to Streamline Patient-to-Trial Matching

Majd Abdallah, Sigve Nakken, Mariska Bierkens, Johanna Galvis, Alexis Groppi, Slim Karkar, Lana Meiqari, Maria Alexandra Rujano, Steve Canham, Rodrigo Dienstmann, Remond Fijneman, Eivind Hovig, Gerrit Meijer, Macha Nikolski

专题命中 医学数据与评测 ：biomedical(abstract)；分类 cs.LG、q-bio

ASD Classification on Dynamic Brain Connectome using Temporal Random Walk with Transformer-based Dynamic Network Embedding

Suchanuch Piriyasatit, Chaohao Yuan, Ercan Engin Kuruoglu

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.LG、q-bio

MassSpecGym: A benchmark for the discovery and identification of molecules

Roman Bushuiev, Anton Bushuiev, Niek F. de Jonge, Adamo Young, Fleming Kretschmer, Raman Samusevich, Janne Heirman, Fei Wang, Luke Zhang, Kai Dührkop, Marcus Ludwig, Nils A. Haupt, Apurva Kalia, Corinna Brungs, Robin Schmid, Russell Greiner, Bo Wang, David S. Wishart, Li-Ping Liu, Juho Rousu, Wout Bittremieux, Hannes Rost, Tytus D. Mak, Soha Hassoun, Florian Huber, Justin J. J. van der Hooft, Michael A. Stravs, Sebastian Böcker, Josef Sivic, Tomáš Pluskal

专题命中 医学数据与评测 ：biomedical(abstract)；分类 cs.LG、q-bio

Remote Blood Oxygen Estimation From Videos Using Neural Networks

Joshua Mathew, Xin Tian, Min Wu, Chau-Wai Wong

专题命中 医学数据与评测 ：biomedical(comments,journal_ref)；分类 cs.CV、cs.LG、eess.IV

Comments Published in IEEE Journal of Biomedical and Health Informatics

Journal ref "Remote Blood Oxygen Estimation From Videos Using Neural Networks," in IEEE Journal of Biomedical and Health Informatics, vol. 27, no. 8, pp. 3710-3720, Aug. 2023

Federated Learning in Distributed Medical Databases: Meta-Analysis of Large-Scale Subcortical Brain Data

Santiago Silva, Boris Gutman, Eduardo Romero, Paul M Thompson, Andre Altmann, Marco Lorenzi

专题命中 医学数据与评测 ：biomedical(abstract)；分类 cs.LG、q-bio

Comments Federated learning, distributed databases, PCA, SVD, meta-analysis, brain disease

dsLassoCov: a federated machine learning approach incorporating covariate control

Han Cao, Augusto Anguita, Charline Warembourg, Xavier Escriba-Montagut, Martine Vrijheid, Juan R. Gonzalez, Tim Cadman, Verena Schneider-Lindner, Daniel Durstewitz, Xavier Basagana, Emanuel Schwarz

专题命中 医学数据与评测 ：biomedical(abstract)；分类 cs.LG、q-bio

Comments 17 pages, 5 figures

MultiOrg: A Multi-rater Organoid-detection Dataset

Christina Bukas, Harshavardhan Subramanian, Fenja See, Carina Steinchen, Ivan Ezhov, Gowtham Boosarpu, Sara Asgharpour, Gerald Burgstaller, Mareike Lehmann, Florian Kofler, Marie Piraud

专题命中 医学数据与评测 ：biomedical(abstract)；分类 cs.CV、q-bio

A quantum inspired predictor of Parkinsons disease built on a diverse, multimodal dataset

Diya Vatsavai, Anya Iyer, Ashwin A. Nair

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.LG、q-bio

Comments 20 pages, 3 figures, 1 table

NeuroGraph: Benchmarks for Graph Machine Learning in Brain Connectomics

Anwar Said, Roza G. Bayrak, Tyler Derr, Mudassir Shabbir, Daniel Moyer, Catie Chang, Xenofon Koutsoukos

专题命中 医学数据与评测 ：MRI(abstract)；分类 cs.LG、q-bio

Comments NeurIPS23

A Flow-based Truncated Denoising Diffusion Model for Super-resolution Magnetic Resonance Spectroscopic Imaging

Siyuan Dong, Zhuotong Cai, Gilbert Hangel, Wolfgang Bogner, Georg Widhalm, Yaqing Huang, Qinghao Liang, Chenyu You, Chathura Kumaragamage, Robert K. Fulbright, Amit Mahajan, Amin Karbasi, John A. Onofrey, Robin A. de Graaf, James S. Duncan

专题命中 医学数据与评测 ：medical image(comments,journal_ref)；分类 cs.CV、cs.LG、eess.IV

Comments Accepted by Medical Image Analysis (MedIA)

Journal ref Medical Image Analysis (2024): 103358

MBD: Multi b-value Denoising of Diffusion Magnetic Resonance Images

Jakub Jurek, Andrzej Materka, Kamil Ludwisiak, Agata Majos, Filip Szczepankiewicz

专题命中 医学数据与评测 ：分类 cs.CV、cs.LG、eess.IV；medical image(comments)；biomedical(comments)

Comments this is a biomedical engineering work using machine learning to enhance medical images

Unsupervised anomaly localization in high-resolution breast scans using deep pluralistic image completion

Nicholas Konz, Haoyu Dong, Maciej A. Mazurowski

专题命中 医学数据与评测 ：medical image(comments,journal_ref)；分类 cs.CV、cs.LG、eess.IV

Comments Accepted in Medical Image Analysis (2023). Our code is at https://github.com/mazurowski-lab/picard

Journal ref Medical Image Analysis, 102836 (2023)

Semantically Rich Local Dataset Generation for Explainable AI in Genomics

Pedro Barbosa, Rosina Savisaar, Alcides Fonseca

专题命中 医学数据与评测 ：biomedical(abstract)；分类 cs.LG、q-bio

Hard-Attention Gates with Gradient Routing for Endoscopic Image Computing

Giorgio Roffo, Carlo Biffi, Pietro Salvagnini, Andrea Cherubini

专题命中 医学数据与评测 ：medical image(comments,journal_ref)；分类 cs.CV、cs.LG、eess.IV

Comments Attention Gates, Hard-Attention Gates, Gradient Routing, Feature Selection Gates, Endoscopy, Medical Image Processing, Computer Vision

Journal ref In Proceedings of the 27th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2024), 2024

Evaluation of Mean Shift, ComBat, and CycleGAN for Harmonizing Brain Connectivity Matrices Across Sites

Hanliang Xu, Nancy R. Newlin, Michael E. Kim, Chenyu Gao, Praitayini Kanakaraj, Aravind R. Krishnan, Lucas W. Remedios, Nazirah Mohd Khairi, Kimberly Pechman, Derek Archer, Timothy J. Hohman, Angela L. Jefferson, The BIOCARD Study Team, Ivana Isgum, Yuankai Huo, Daniel Moyer, Kurt G. Schilling, Bennett A. Landman

专题命中 医学数据与评测 ：MRI(abstract)；分类 q-bio、eess.IV

Comments 11 pages, 5 figures, to be published in SPIE Medical Imaging 2024: Image Processing

Nigerian Schizophrenia EEG Dataset (NSzED) Towards Data-Driven Psychiatry in Africa

E. O. Olateju, K. P. Ayodele, S. K. Mosaku

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 q-bio、eess.SP

Comments Manuscript being updated as more data-acquisition proceeds. Link to dataset will be added on next update

MODMA dataset: a Multi-modal Open Dataset for Mental-disorder Analysis

Hanshu Cai, Yiwen Gao, Shuting Sun, Na Li, Fuze Tian, Han Xiao, Jianxiu Li, Zhengwu Yang, Xiaowei Li, Qinglin Zhao, Zhenyu Liu, Zhijun Yao, Minqiang Yang, Hong Peng, Jing Zhu, Xiaowei Zhang, Guoping Gao, Fang Zheng, Rui Li, Zhihua Guo, Rong Ma, Jing Yang, Lan Zhang, Xiping Hu, Yumin Li, Bin Hu

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.LG、q-bio

Journal ref Sci Data 9, 178 (2022)

Framework Construction of an Adversarial Federated Transfer Learning Classifier

Hang Yi, Tongxuan Bie, Tongjiang Yan

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.LG、q-bio

TrialGraph: Machine Intelligence Enabled Insight from Graph Modelling of Clinical Trials

Christopher Yacoumatos, Stefano Bragaglia, Anshul Kanakia, Nils Svangård, Jonathan Mangion, Claire Donoghue, Jim Weatherall, Faisal M. Khan, Khader Shameer

专题命中 医学数据与评测 ：CT(abstract)；分类 cs.LG、q-bio

Comments 17 pages (Manuscript); 3 pages (Supplemental Data); 9 figures

Clinical Trial Information Extraction with BERT

Xiong Liu, Greg L. Hersch, Iya Khalil, Murthy Devarakonda

专题命中 医学数据与评测 ：CT(abstract)；分类 cs.LG、q-bio

Comments HealthNLP 2021, IEEE International Conference on Healthcare Informatics (ICHI 2021)

Preventing dataset shift from breaking machine-learning biomarkers

Jéroôme Dockès, Gaël Varoquaux, Jean-Baptiste Poline

专题命中 医学数据与评测 ：biomedical(abstract)；分类 cs.LG、q-bio

Comments GigaScience, BioMed Central, In press

PAD-UFES-20: a skin lesion dataset composed of patient data and clinical images collected from smartphones

Andre G. C. Pacheco, Gustavo R. Lima, Amanda S. Salomão, Breno A. Krohling, Igor P. Biral, Gabriel G. de Angelo, Fábio C. R. Alves, José G. M. Esgario, Alana C. Simora, Pedro B. C. Castro, Felipe B. Rodrigues, Patricia H. L. Frasson, Renato A. Krohling, Helder Knidel, Maria C. S. Santos, Rachel B. do Espírito Santo, Telma L. S. G. Macedo, Tania R. P. Canuto, Luíz F. S. de Barros

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 q-bio、eess.IV

BOLD5000: A public fMRI dataset of 5000 images

Nadine Chang, John A. Pyles, Abhinav Gupta, Michael J. Tarr, Elissa M. Aminoff

专题命中 医学数据与评测 ：MRI(abstract)；分类 cs.CV、q-bio

Comments Currently in submission to Scientific Data

The TCGA Meta-Dataset Clinical Benchmark

Mandana Samiei, Tobias Würfl, Tristan Deleu, Martin Weiss, Francis Dutil, Thomas Fevens, Geneviève Boucher, Sebastien Lemieux, Joseph Paul Cohen

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.LG、q-bio

Comments 5 Pages, Submitted to MLCB 2019

Deep SNP: An End-to-end Deep Neural Network with Attention-based Localization for Break-point Detection in SNP Array Genomic data

Hamid Eghbal-zadeh, Lukas Fischer, Niko Popitsch, Florian Kromp, Sabine Taschner-Mandl, Khaled Koutini, Teresa Gerber, Eva Bozsaky, Peter F. Ambros, Inge M. Ambros, Gerhard Widmer, Bernhard A. Moser

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.LG、q-bio

Comments Accepted at the Joint ICML and IJCAI 2018 Workshop on Computational Biology

A Discriminative Event Based Model for Alzheimer's Disease Progression Modeling

Vikram Venkatraghavan, Esther Bron, Wiro Niessen, Stefan Klein

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.CV、q-bio

Comments Information Processing in Medical Imaging (IPMI), 2017

Supporting Regularized Logistic Regression Privately and Efficiently

Wenfa Li, Hongzhe Liu, Peng Yang, Wei Xie

专题命中 医学数据与评测 ：biomedical(abstract)；分类 cs.LG、q-bio

Benchmark of structured machine learning methods for microbial identification from mass-spectrometry data

Kévin Vervier, Pierre Mahé, Jean-Baptiste Veyrieras, Jean-Philippe Vert

专题命中 医学数据与评测 ：diagnosis(abstract)；分类 cs.LG、q-bio