A protocol for evaluating robustness to H&E staining variation in computational pathology models
评估计算病理学模型对苏木精-伊红染色变异鲁棒性的协议
Lydia A. Schönpflug, Nikki van den Berg, Sonali Andani, Nanda Horeweg, Jurriaan Barkey Wolf, Tjalling Bosse, Viktor H. Koelzer, Maxime W. Lafarge
机构
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Department of Biomedical Engineering, University of Basel(巴塞尔大学生物医学工程系)
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Institute of Medical Genetics and Pathology, University Hospital Basel(巴塞尔大学医学遗传学与病理学研究所)
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Department of Pathology, Leiden University Medical Center(莱顿大学医学中心病理学系)
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Department of Radiation Oncology, Leiden University Medical Center(莱顿大学医学中心放射肿瘤学系)
QCAgent: An agentic framework for quality-controllable pathology report generation from whole slide image
QCAgent:一种用于从全切片图像生成质量可控病理科报告的代理框架
Rundong Wang, Wei Ba, Ying Zhou, Yingtai Li, Bowen Liu, Baizhi Wang, Yuhao Wang, Zhidong Yang, Kun Zhang, Rui Yan, S. Kevin Zhou
机构
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School of Biomedical Engineering, Division of Life Sciences
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Medicine, University of Science
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Technology of China, Hefei, Anhui, 230026, P.R. China Center for Medical Imaging, Robotics, Analytic Computing \& Learning (MIRACLE), Suzhou Institute for Advance Research, USTC, 215123, P.R. China Chinese PLA General Hospital Ninth Medical Center, China Hong Kong University of Science
Mixed Magnification Aggregation for Generalizable Region-Level Representations in Computational Pathology
混合放大聚合用于计算病理学中的通用区域级表示
Eric Zimmermann, Julian Viret, Michal Zelechowski, James Brian Hall, Neil Tenenholtz, Adam Casson, George Shaikovski, Eugene Vorontsov, Siqi Liu, Kristen A Severson
A deep learning framework for efficient pathology image analysis
一种用于高效病理图像分析的深度学习框架
Peter Neidlinger, Tim Lenz, Sebastian Foersch, Chiara M. L. Loeffler, Jan Clusmann, Marco Gustav, Lawrence A. Shaktah, Rupert Langer, Bastian Dislich, Lisa A. Boardman, Amy J. French, Ellen L. Goode, Andrea Gsur, Stefanie Brezina, Marc J. Gunter, Robert Steinfelder, Hans-Michael Behrens, Christoph Röcken, Tabitha Harrison, Ulrike Peters, Amanda I. Phipps, Giuseppe Curigliano, Nicola Fusco, Antonio Marra, Michael Hoffmeister, Hermann Brenner, Jakob Nikolas Kather
Towards Spatial Transcriptomics-driven Pathology Foundation Models
迈向基于空间转录组的病理基础模型
Konstantin Hemker, Andrew H. Song, Cristina Almagro-Pérez, Guillaume Jaume, Sophia J. Wagner, Anurag Vaidya, Nikola Simidjievski, Mateja Jamnik, Faisal Mahmood
机构
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Department of Pathology, Mass General Brigham, Harvard Medical School, Boston, MA, USA(病理学系,马萨诸塞州总医院与哈佛医学院,波士顿,马萨诸塞州,美国)
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Department of Computer Science & Technology, University of Cambridge, Cambridge, UK(计算机科学与技术系,剑桥大学,剑桥,英国)
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Cancer Program, Broad Institute of Harvard and MIT, Cambridge, MA, USA(癌症计划,哈佛与麻省理工联合学院,剑桥,马萨诸塞州,美国)
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Data Science Program, Dana-Farber Cancer Institute, Boston, MA, USA(数据科学计划,达纳-法伯癌症研究所,波士顿,马萨诸塞州,美国)
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Harvard-MIT Division of Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, USA(哈佛-麻省理工健康科学与技术 division,麻省理工学院,剑桥,马萨诸塞州,美国)
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Télécom Paris, Institut Polytechnique de Paris, Paris, France(巴黎电信学院,巴黎理工学院,巴黎,法国)
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Harvard Data Science Initiative, Harvard University, Cambridge, MA, USA(哈佛大学数据科学倡议,哈佛大学,剑桥,马萨诸塞州,美国)
Deep-Learning Atlas Registration for Melanoma Brain Metastases: Preserving Pathology While Enabling Cohort-Level Analyses
深度学习解剖图谱注册用于黑色素瘤脑转移:在保留病理学的同时实现队列级分析
Nanna E. Wielenberg, Ilinca Popp, Oliver Blanck, Lucas Zander, Jan C. Peeken, Stephanie E. Combs, Anca-Ligia Grosu, Dimos Baltas, Tobias Fechter
机构
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Department of Radiation Oncology, Medical Center – University of Freiburg, Faculty of Medicine, University of Freiburg(放射肿瘤科,弗赖堡大学医学中心-弗赖堡大学医学院)
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Division of Medical Physics, Department of Radiation Oncology, Medical Center – University of Freiburg, Faculty of Medicine, University of Freiburg(医学物理系,放射肿瘤科,弗赖堡大学医学中心-弗赖堡大学医学院)
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Department of Radiation Oncology, University Medical Center Schleswig-Holstein(放射肿瘤科,石勒苏益格-荷尔斯泰因大学医学中心)
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Department of Radiation Oncology, TUM School of Medicine and Health, TUM University Hospital Rechts der Isar, Technical University of Munich(放射肿瘤科,慕尼黑技术大学医学院及健康科学系,慕尼黑技术大学医院雷chts der Isar)
Deep Learning-Based Fixation Type Prediction for Quality Assurance in Digital Pathology
基于深度学习的固定类型预测用于数字病理学的质量保证
Oskar Thaeter, Tanja Niedermair, Jan E. G. Albin, Johannes Raffler, Ralf Huss, Peter J. Schüffler
机构
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Institute of Pathology, Technical University of Munich, Germany(慕尼黑技术大学病理学研究所)
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School of Computation, Information and Technology, Technical University of Munich, Germany(慕尼黑技术大学计算、信息与技术学院)
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Munich Center for Machine Learning, Germany(慕尼黑机器学习中心)
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Institute of Pathology, University of Regensburg, Regensburg, Germany(罗森堡大学病理学研究所)
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Institute of Pathology and Molecular Diagnostics, University Hospital of Augsburg, Germany(埃格利希大学医院病理学与分子诊断研究所)
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Digital Medicine, University Hospital of Augsburg, Germany(埃格利希大学医院数字医学)
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Bavarian Cancer Research Center (BZKF), Augsburg, Germany(巴伐利亚癌症研究中心(BZKF))
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Bio M {}^{\text{M}} Biotech Cluster Development GmbH, Martinsried, Germany(Bio M {}^{\text{M}} 生物技术集群发展 GmbH)
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Institute of Pathology, Medical Faculty Mannheim, University Heidelberg, Germany(海德堡大学曼海姆医学学院病理学研究所)
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Munich Data Science Institute, Technical University of Munich, Germany(慕尼黑数据科学研究所)
Prototype-driven fusion of pathology and spatial transcriptomics for interpretable survival prediction
基于病理学和空间转录组的原型驱动融合用于可解释的生存预测
Lihe Liu, Xiaoxi Pan, Yinyin Yuan, Lulu Shang
机构
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Department of Biostatistics, MD Anderson Cancer Center(生物统计学系,MD安德森癌症中心)
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Department of Translational Molecular Pathology, MD Anderson Cancer Center(转化分子病理学系,MD安德森癌症中心)
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The Institute for Data Science in Oncology (IDSO), MD Anderson Cancer Center(肿瘤学数据科学研究所(IDSO),MD安德森癌症中心)
机构
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Shanghai Jiao Tong University(上海交通大学)
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Washington University in St. Louis(华盛顿大学)
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University of Science and Technology Beijing(北京科技大学)
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Shanghai Artificial Intelligence Laboratory(上海人工智能实验室)
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Department of Surgical Oncology and General Surgery, Key Laboratory of Precision Diagnosis and Treatment of Gastrointestinal Tumours, Ministry of Education, The First Hospital of China Medical University(外科肿瘤科和普通外科,国家教育委员会胃肠道肿瘤精准诊断与治疗重点实验室,中国医科大学第一医院)
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Shanghai Innovation Institute(上海创新研究院)
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Sensetime Research(商汤科技研究院)
机构
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Tsinghua Shenzhen International Graduate School, Tsinghua University, China(清华大学深圳国际研究生院)
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Biomedical Engineering Programme, City University of Hong Kong (Dongguan)(香港城市大学(东莞)生物医学工程项目)
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Department of Pathology, Affiliated Hospital of Nantong University(南通大学附属医院病理科)
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Nantong University(南通大学)
Do Pathology Foundation Models Encode Disease Progression? A Pseudotime Analysis of Visual Representations
病理基础模型是否编码疾病进展?对视觉表示的伪时间分析
Pritika Vig, Ren-Chin Wu, William Lotter
机构
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Massachusetts Institute of Technology(麻省理工学院)
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Department of Pathology, Dana-Farber Cancer Institute(达纳-法伯癌症研究所病理部)
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Department of Data Science, Dana-Farber Cancer Institute(达纳-法伯癌症研究所数据科学部)
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Brigham and Women's Hospital(布里奇沃特医院)
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Harvard Medical School(哈佛医学院)
机构
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Sch Comp Sci \& Technol, Xi'an Jiaotong University Xi'an China
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University of Cambridge Cambridge United Kingdom
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Sch Comp Sci \& Technol, Xi'an Jiaotong University
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University of Cambridge
机构
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Department of Pathology and Laboratory Medicine, University of Pennsylvania(病理学与实验室医学系,宾夕法尼亚大学)
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Department of Electrical and System Engineering, University of Pennsylvania(电气与系统工程系,宾夕法尼亚大学)
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Department of Biomedical Engineering, Georgia Institute of Technology and Emory University(生物医学工程系,佐治亚理工学院和埃默里大学)
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NVIDIA Corporation(NVIDIA公司)
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Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania(生物统计学、流行病学与信息学系,宾夕法尼亚大学)
机构
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Shenzhen International Graduate School, Tsinghua University(清华大学深圳国际研究生院)
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School of Informatics, Xiamen University(厦门大学信息学院)
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School of Engineering, Westlake University(西湖大学工程学院)
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Zhongnan Hospital, Wuhan University(武汉大学中南医院)
Information-driven Fusion of Pathology Foundation Models for Enhanced Disease Characterization
基于信息驱动的病理基础模型融合以增强疾病表征
Brennan Flannery, Thomas DeSilvio, Jane Nguyen, Satish E. Viswanath
机构
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Case Western Reserve University(凯斯西储大学)
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Department of Biomedical Engineering(生物医学工程系)
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Cleveland Clinic(克利夫兰诊所)
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Department of Pathology(病理学系)
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Emory University(埃默里大学)
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Department of Pediatrics(儿科学系)
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Louis Stokes VA Cleveland Medical Center(路易斯·斯托克斯退伍军人医疗中心)
Learning Relative Gene Expression Trends from Pathology Images in Spatial Transcriptomics
从病理图像中学习相对基因表达趋势
Kazuya Nishimura, Haruka Hirose, Ryoma Bise, Kaito Shiku, Yasuhiro Kojima
机构
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Laboratory of Computational Life Science, National Cancer Center Japan(国立癌症中心日本计算生命科学实验室)
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Department of Advanced Information Technology, Kyushu University(九州大学先进信息技术系)