AI for Science

The work functions of 7Li and 6Li metals have been measured as a function of temperature, by using photoionization of pure isolated metal nanoparticles in a beam. These data reveal a marked isotope effect in the temperature variation of these work functions. Furthermore, for both isotopes the curvature of this temperature variation is found to be significantly larger than may be ascribed purely to a change in the electron gas density. These findings enhance the characterization of lithium as a quantum material in which the interplay between electronic and ionic degrees of freedom is nontrivial, and call for a microscopic understanding beyond simple models. Additionally, the slope of the work function curves was observed to vanish in the low temperature limit, as had been predicted on the basis of the Third Law of thermodynamics.

Brittle materials subjected to thermal shocks experience strong temperature gradients that in turn give rise to mechanical stresses that can be large enough to induce fracture. This work presents a complete model for phase-field fracture for coupled thermo-mechanical problems, wherein the bulk material properties, the material strength, and the fracture toughness are specified independently. The capabilities of the model are assessed across a wide span of scenarios in thermo-mechanical fracture, from the propagation of large pre-existing cracks to crack nucleation under spatially uniform states of stress. In particular, we revisit the controlled quenching of glass plates, and demonstrate how the model captures experimentally observed crack patterns across a range of thermal loads. Ceramic disks subjected to infrared radiation are also examined, with the model reproducing both straight cracks in notched specimens and branching in intact specimens. Finally, ceramic pellets subjected to rapid power pulses are examined, with the model explaining experimental transitions from intact to fractured pellets and the important role of material strength. The results demonstrate that the complete phase-field model unifies the treatment of distinct fracture scenarios under thermal shock, surpassing classical approaches and enabling more reliable prediction of brittle fracture in extreme environments.

Phase transitions are omnipresent in modern condensed matter physics and its applications. In solids, first-order phase transformations typically occur by nucleation and growth under non-equilibrium conditions. Under constant external conditions, $\textit{e.g.}$, constant annealing temperature and pressure, the nucleation and growth dynamics are often thought of as spatially and temporally independent. Here, $\textit{in-situ}$ Bragg X-ray photon correlation spectroscopy (XPCS) reveals nanoscale spatial and dynamical heterogeneity in the perovskite-to-brownmillerite topotactic phase transformation in La$_{0.7}$Sr$_{0.3}$CoO$_3$ thin films annealed under constant reducing conditions over a time span of multiple hours. Specifically, a timescale associated with domain growth remains stable, with a corresponding domain wall speed of $v_d = 6 \pm 0.5 \times10^{-4}$~nm/s ($2 \pm 0.2$~nm/h), while a slower timescale, associated with temperature-driven de-pinning of domains, leads to accelerating dynamics with timescales following an aging power law with exponent -2.2$\pm$0.5. This experiment demonstrates that Bragg XPCS is a powerful tool to study nanoscale dynamics in structural phase transformations, with the ability to extract quantitative average values related to nano-domain motion $\textit{in-situ}$. The results are relevant for phase engineering of phase-change devices, as they show that nanoscale dynamics, linked to domain and domain-wall motion, can continuously evolve and speed up with time, even hours after the initiation of the phase transformation, with potential repercussions on electrical performance.

Valley splitting in strained Si/SiGe quantum wells is a central parameter for silicon spin qubits and is commonly described with envelope-function and effective-mass theories. These models provide a computationally efficient continuum description and have been shown to agree well with atomistic approaches when the confinement potential is slowly varying on the lattice scale. In modern Si/SiGe heterostructures with atomically sharp interfaces and engineered Ge concentration profiles, however, the slowly varying potential approximation underlying conventional (local) envelope-function theory is challenged. We formulate an exact multi-valley envelope-function model by combining Burt-Foreman-type envelope-function theory, which does not rely on the assumption of a slowly varying potential, with a valley-sector decomposition of the Brillouin zone. This construction enforces band-limited envelopes, which satisfy a set of coupled integro-differential equations with a non-local potential energy operator. Using degenerate perturbation theory, we derive the intervalley coupling matrix element within this non-local model and prove that it is strictly invariant under global shifts of the confinement potential (choice of reference energy). We then show that the conventional local envelope model generically violates this invariance due to spectral leakage between valley sectors, leading to an unphysical energy-reference dependence of the intervalley coupling. The resulting ambiguity is quantified by numerical simulations of various engineered Si/SiGe heterostructures. Finally, we propose a simple spectrally filtered local approximation that restores the energy-reference invariance exactly and provides a good approximation to the exact non-local theory.

We present efficient and practical protocols to measure the second Rényi entropy, whose exponential is known as the purity. Our approach is based on expressing the purity in terms of transition probabilities generated by an echo-type forward-backward evolution sequence, making it applicable to quantum many-body systems. Notably, our approach does not rely on random-noise averaging, a feature that can be extended to protocols to measure out-of-time-order correlation functions, as we demonstrate. By way of example, we show that our protocols can be practically implemented in superconducting qubit-based platforms, as well as in cavity-QED trapped ultra-cold gases.

Characterization of the dynamics of an impurity immersed in a quantum medium is vital for fundamental understanding of matter as well as applications in modern day quantum technologies. The case of strong and long-ranged interactions is of particular importance here, as it opens the possibility to leverage quantum correlations in controlling the system properties. Here, we consider a charged impurity moving in a bosonic gas and study its properties out of equilibrium. We extract the stationary momentum of the ion at long times, which is nonzero due to the superfluid nature of the medium, and the effective mass which stems from dressing the impurity with the host atoms. The nonlinear evolution leads not only to emission of density waves, but also momentum transfer back to the ion, resulting in the possibility of oscillatory dynamics.

This paper elaborates on the implications of the relationship between the Second and Third Laws and provides a comprehensive formal and historical justification for the logical redundancy of the Nernst heat theorem. By revisiting the Nernst-Einstein debate, the underlying hypotheses that lead to the traditional view of the Third Law as an independent postulate are examined. It is argued that the historical rejection of Nernst's proof -- motivated by Einstein's insistence on the practical non-performability of cycles at absolute zero -- overlooks the fact that a universal Second Law already precludes such cycles, rendering an independent Third Law an unnecessary complexity. Ultimately, the Nernst theorem is shown to be an essential consistency regulator rather than an independent physical discovery.

The paper solves the problem of continuum limit in bosonic thermal coherent-state path integrals. For this purpose, exact discrete versions of the path integral are constructed for three different orderings of the Hamiltonian: normal, anti-normal and symmetric (Weyl order). Subsequently, their different continuum versions are checked on the harmonic oscillator, to choose the symmetric ordering as a possibly correct choice for all polynomial Hamiltonians. Spotted mathematical subtleties in the simple case serve as a clue to the general solution. Finally, a general justification for the symmetric order is provided by deriving the continuum path integral starting from the exact discrete case using a renormalization procedure in the imaginary time frequency domain. While the role of Weyl order has already been found, the paper provides the missing proof of its suitability for every polynomial Hamiltonian and simplifies the previously established construction by referring only to creation and annihilation operators (without position and momentum operators).

Constructing accurate and computationally efficient surrogate models (or emulators) for predicting dynamical system responses is critical in many engineering domains, yet remains challenging due to the strongly nonlinear and high-dimensional mapping from external excitations and system parameters to system responses. This work introduces a novel Function-on-Function Nonlinear AutoRegressive model with eXogenous inputs (F2NARX), which reformulates the recently proposed $\mathcal{F}$-NARX method from a function-on-function regression perspective. The proposed framework substantially improves predictive efficiency while maintaining high accuracy. By combining principal component analysis with Gaussian process regression, F2NARX further enables probabilistic predictions of dynamical responses via the unscented transform in an autoregressive manner. Such probabilistic prediction capabilities further facilitate active learning for first-passage probability evaluation. The effectiveness of the method is demonstrated through case studies of varying complexity. Results show that F2NARX outperforms state-of-the-art NARX model by orders of magnitude in efficiency while achieving higher accuracy in general. Meanwhile, the active learning approach enables accurate estimation of first-passage failure probabilities for dynamical systems using only a small number of training time histories.

We consider spherically symmetric Yang-Mills equations with gauge group $SO(d)$ in $d+1$ dimensional Minkowski spacetime. For any given odd $d\geq 11$, we establish existence and uniqueness (modulo reflection symmetry) of exactly $N$ smooth self-similar solutions, where $N$ is the number of zeros of an explicit polynomial $P_m(z)$ of degree $m=(d-5)/2$ in the interval $0<z<1$. The number $N$ can be determined algorithmically by an explicit computation. Our extensive computations for large odd dimensions suggest that $N=3$ for all odd $d\geq 11$. Two of these self-similar solutions admit closed-form expressions: one has been known previously, while the other appears to be new. Our result points toward a relatively simple landscape of possible blowup scenarios for high-dimensional Yang-Mills equations. Beyond its purely mathematical interest, this rigidity of self-similar blowup may also be relevant from a physical perspective, as it constrains the possible ultraviolet dynamics of non-abelian gauge fields in higher-dimensional Yang-Mills theories arising in string-inspired extra-dimensional setups and in holographic models.

Photoluminescent color centers in diamond and hexagonal boron nitride (hBN) are powerful nanoscale solid-state quantum sensors that are explored in a plethora of quantum technologies. Methods for integrating them into macroscopic structures that improve their sensitivity and enable their large-scale deployment are highly sought after. Here, we demonstrate cavity-enhanced photoluminescence (PL) of fluorescent nanodiamonds (FNDs) and hBN nanoparticles (NPs) embedded in polymer-based thin-film optical cavities on the centimeter scale. The cavity resonances efficiently modulate the spectral PL peak position of nitrogen-vacancy (NV) centers in FNDs across the NV PL spectrum and lead to an up to 2.9-fold Purcell-enhancement of the NV PL decay rate. The brightness of hBN NPs increases by up to a factor of three and the PL decay rate is enhanced by up to 13-fold inside the cavities. Finally, we find a 4.8 times improved magnetic field sensitivity of 20 nm FNDs in thin-film cavities due to cavity-enhanced optically detected magnetic resonance contrast and PL brightness. Our study demonstrates a low-cost and scalable method for the fabrication of quantum sensor-doped thin-film cavities, which is an important step toward the development of advanced quantum sensing technologies.

This study investigates the dynamics of quantum information and computational resources using a tractable model of coupled harmonic oscillators. We precisely characterize the interplay between mutual information, synchronization, and circuit complexity, demonstrating that they serve as complementary yet distinct measures of quantum correlations. Our analysis reveals how coupling strength, detuning, and external magnetic fields modulate these quantities, with synchronization and mutual information exhibiting marked divergence in nonlinear regimes. By employing exact Gaussian methods, we compute the circuit depth required to prepare target states and connect increased fidelity to more regular dynamical behavior. Furthermore, we analyze single-ion transport in a harmonic trap, comparing sudden and adiabatic protocols. We introduce a nonadiabaticity metric to quantify the fidelity-complexity trade-off, showing that smooth control sequences significantly minimize operational errors by suppressing excitations. These results provide a refined understanding of quantum correlations and offer concrete principles for optimizing control strategies in quantum technologies.

Fractional Chern insulators (FCI) are exotic phases of matter realized at partial filling of a Chern band that host fractionally charged anyon excitations. Recent numerical studies in several microscopic models reveal that increasing the bandwidth in an FCI can drive a direct transition into a charge-2e superconductor rather than a conventional Fermi liquid. Motivated by this surprising observation, we propose a theoretical framework that captures the intertwinement between superconductivity and fractionalization in a lattice setting. Leveraging the duality between three field-theoretic descriptions of the Jain topological order, we find that bandwidth tuning can drive a single parent FCI at $ν= 2/3$ into five different superconductors, some of which are intrinsically non-Abelian and support Majorana zero modes. Our results reveal a rich landscape of exotic superconductors with no normal state Fermi surface and predict novel higher-charge superconductors coexisting with neutral non-Abelian topological order at more general filling fractions $ν= p/(2p+1)$.

In this work we introduce an effective approach to quantize the electromagnetic response of plasmonic metallic nanostructures. Their shape is arbitrary and they feature a realistic description of the frequency-dependent metal dielectric function that is based on experimental data. The derived quantum modes correctly reproduce the linear response macroscopic polarization of the nanoparticle upon external drive according to classical macroscopic Maxwell equations in the quasistatic limit. We further investigate the coupling of these modes to a quantum-chemical molecular description. The presented methodology paves the way for accurate modeling of plexcitonic system, where strong plasmon-molecule coupling and/or strong-driving fields call for a quantized description of the plasmonic response.

Liquid mixtures can separate into phases with distinct composition. This phenomenon has recently come back to prominence due to its role in complex biological liquids, such as the cytoplasm, which contain thousands of components. For simple two-component mixtures phase-separated states are global free energy minima. However, local free energy minima, i.e. metastable states, are known to play a dominant role in complex systems with many components. For example, Hopfield neural networks can retrieve information from partial cues via relaxation to metastable states. Under what conditions can phase separated states be metastable, and what are the implications for information processing in multicomponent liquids? In this work we develop the general thermodynamic formalism of metastable phase separation. We then apply this formalism to an illustrative toy example inspired by recent experiments, binary mixtures with high-order interactions. Finally, as core application of the formalism, we study metastability in Hopfield liquids, a class of multicomponent mixtures capable of storing information on the composition of phases. We show that these phases can be retrieved from partial cues via metastable phase separation. Spatial simulations of liquids with a large number of components match our analytical solution. Our work suggests that complex biological mixtures can perform information retrieval through metastable phase separation.

We study energy minimization problems in quantum chemistry through the lens of computational algebraic geometry. We focus on minimizing the Rayleigh quotient of a Hamiltonian over a tensor train variety. The complex critical points of this problem approximate eigenstates of the quantum system, with the global minimum approximating the ground state. We call the number of critical points the Rayleigh-Ritz degree. We first study the Rayleigh-Ritz degree and introduce the Rayleigh-Ritz discriminant, which describes Hamiltonians that lead to a deficient number of critical points. We then specialize this framework to tensor train varieties: we identify instances when they are Segre products of projective spaces, report what we know about their defining ideals, and present a birational parametrization from products of Grassmannians. We use homotopy continuation to compute all critical points of this optimization problem over various tensor train and determinantal varieties. Finally, we use these results to benchmark state-of-the-art methods, the Alternating Linear Scheme and Density Matrix Renormalization Group.

Quantum networks and modular quantum computers require efficient spin-photon interfaces, often realized using optical resonators that enhance radiative decay on a desired transition. However, this requires small mode volumes and high quality factors, which limits multiplexing capacity and demands precise frequency tuning. Here, we demonstrate an alternative approach that circumvents these bottlenecks for upscaling. Using a W1 silicon photonic crystal waveguide with a tailored photonic bandgap, we selectively inhibit unwanted decay pathways, thereby redirecting emission to the desired transition. This enables efficient photon collection over a large frequency range, allowing the resolution and individual addressing of tens of erbium dopants. Their lifetimes are preserved, or even increased, compared to bulk material. The extended mode volume of the devices enables the use of lower dopant concentrations, thereby improving emitter coherence. Our approach can be combined with Purcell enhancement and applied to other spin-qubit platforms, opening intriguing perspectives for photonic quantum technologies.

We study double-well systems with strong magnetic fields and deep potential wells. We present lower bounds on tunneling rates for generic values of the coupling constant. This result was recently announced and complements our recent counter-example construction which exhibits vanishing tunneling for specially-constructed double-well potentials.

The Richards equation, a nonlinear elliptic parabolic equation, is widely used to model infiltration in porous media. We develop a finite element method for solving the Richards equation by introducing a new bounded auxiliary variable to eliminate unbounded terms in the weak formulation of the method. This formulation is discretized using a semi-implicit scheme and the resulting nonlinear system is solved using Newton's method. Our approach eliminates the need of regularization techniques and offers advantages in handling both dry and fully saturated zones. In the proposed techniques, a non-overlapping Schwarz domain decomposition method is used for modeling infiltration in layered soils. We apply the proposed method to solve the Richards equation using the Havercamp and van Genuchten models for the capillary pressure. Numerical experiments are performed to validate the proposed approach, including tests such as modeling flows in fibrous sheets where the initial medium is totally dry, two cases with fully saturated and dry regions, and an infiltration problem in layered soils. The numerical results demonstrate the stability and accuracy of the proposed numerical method. The numerical solutions remain positive in the presence of totally dry zones. The numerical investigations clearly demonstrated the capability of the proposed method to effectively predict the dynamics of flows in unsaturated soils.

We propose a fully mixed virtual element method for the numerical approximation of the coupling between linear poroelasticity equations with strong symmetry of total poroelastic stress (using the Hellinger--Reissner principle) and stress-altered solute diffusion (where diffusive flux depends on the poroelastic stress and nonlinearly on the concentration gradient). Because of the nonlinear coupling, the function spaces associated with the nonlinear diffusion sub-problem are of Banach type. To handle this structure, the solvability of both the continuous and discrete problems is established through a decoupled fixed-point strategy. The linear poroelasticity component is analysed using the theory for perturbed saddle-point problems, whereas the nonlinear diffusion problem, relies on the classical Minty--Browder theorem for monotone global operators. The existence of solutions for the fully coupled system is rigorously proven via Schauder's fixed-point theorem. Additionally, we establish rigorous a priori error estimates for the discrete scheme, successfully handling the strongly cross-coupled nonlinearities. These findings are supported by computational evidence, demonstrating that the formulation asymptotically recovers optimal convergence rates in practice. As a key contribution, both the numerical scheme and its underlying analysis prove to be robust with respect to the poromechanical parameters. Finally, several numerical examples are presented to illustrate the properties and applicability of the proposed scheme in the study of solute transport in the context of brain multiphysics.

Data assimilation (DA) estimates a dynamical system's state from noisy observations. Recent generative models like the ensemble score filter (EnSF) improve DA in high-dimensional nonlinear settings but are computationally expensive. We introduce the ensemble flow filter (EnFF), a training-free, flow matching (FM)-based framework that accelerates sampling and offers flexibility in flow design. EnFF uses Monte Carlo estimators for the marginal flow field, localized guidance for observation assimilation, and utilizes a novel flow path that exploits the Bayesian DA formulation. It generalizes classical filters such as the bootstrap particle filter and ensemble Kalman filter. Experiments on high-dimensional benchmarks demonstrate EnFF's improved cost-accuracy tradeoffs and scalability, highlighting FM's potential for efficient, scalable DA. Code is available at https://github.com/Utah-Math-Data-Science/Data-Assimilation-Flow-Matching.

We analyse the classic two-level additive Schwarz domain-decomposition GMRES preconditioner for finite-element discretisations of the Helmholtz equation with large wavenumber $k$, where both the fine and coarse spaces consist of piecewise polynomials with polynomial degree increasing like $\log k$. We exhibit choices of these fine and coarse spaces such that -- up to factors of $\log k$ -- both are pollution free (with the ratio of the coarse-space dimension to the fine-space dimension arbitrarily small), the number of degrees of freedom per subdomain is constant, and the number of GMRES iterations is proved to be bounded independently of $k$. These are the first $k$-explicit convergence results about a two-level Schwarz preconditioner for high-frequency Helmholtz with a coarse space that is pollution free and does not consist of problem-adapted basis functions.

Electrons bound to the surface of superfluid helium have been proposed for scalable charge and spin-based quantum computing. However single electron quantum measurement in this system has remained elusive. Here we use a hybrid circuit quantum electrodynamic (cQED) device that comprises a quantum dot and a high-impedance superconducting resonator to demonstrate, for the first time, strong coupling between the resonator microwave field and the motional quantum state of the electron. We find a coupling strength between the electron motion and a resonator photon of $g/2π=118$ MHz, exceeding both the electron motional state decoherence and the resonator loss. These experiments open new avenues for investigating light-matter interaction at the single electron level, and are a key step towards measurement and control of electrons on helium-based spin qubits.

The maximum entropy principle, as applied to quantum systems, is a fundamental prescript positing that for a quantum system for which we only have partial knowledge, the maximum entropy state consistent with the partial knowledge is a valuable choice as the system's state. An intriguing result is that in case the only prior knowledge is of a fixed energy, the maximum entropy state turns out to be the thermal state, a ubiquitous state in several arenas, especially in statistical mechanics. We extend the consequences of this principle from static quantum states to dynamic quantum processes. We establish that a quantum channel attains maximal output entropy under a fixed energy constraint if and only if it is an absolutely thermalizing channel, where the fixed output is the thermal state corresponding to that energy. Our results have potential implications for understanding the informational and thermodynamic utility of quantum channels under physical constraints. As an application, we examine the consequences for private randomness distillation from fixed energy constrained quantum processes.

The Kolmogorov-Zakharov stationary states for weak wave turbulence involve solving a leading-order kinetic equation. Recent calculations of higher-order corrections to this kinetic equation using the Martin-Siggia-Rose path integral are reconsidered in terms of stationary states of a Fokker-Planck Hamiltonian. A non-perturbative relation closely related to the quantum mechanical Ehrenfest theorem is introduced and used to express the kinetic equation in terms of divergences of two-point expectation values in the limit of zero dissipation. Similar equations are associated to divergences in higher-order cumulants. It is additionally shown that the ordinary thermal equilibrium state is not actually a stationary state of the Fokker-Planck Hamiltonian, and a non-linear modification of dissipation is considered to remedy this.

In the past two decades, enormous efforts have been made to search for possible platforms and schemes to implement topological quantum computation (TQC). In exploring the Fu-Kane scheme of TQC based on Josephson trijunctions constructed on topological insulators, the predicted Majorana phase diagram of an individual trijunction has already been verified experimentally. If Majorana zero modes indeed exist in this kind of trijunction, coupling between them in multiple trijunction devices should be further expected. In this study, we fabricated Josephson devices containing two adjacent Josephson trijunctions on the surface of Sn-(Bi, Sb)2(Te, S)3 and observed a possible signature of the coupling effect manifesting as the reopening of a minigap in both trijunctions where a closure would otherwise be expected if the trijunctions existed individually. While alternative interpretations cannot be fully ruled out, our findings provide experimental support for the validity of the Fu-Kane theory and provide further motivation for advancing the TQC scheme proposed by Fu and Kane.

In this work the standard kinetic theory assumption of instantaneous collisions is lifted. As a continuation of of a previous paper by Kanzler, Schmeiser, and Tora [KRM, 2024], a model for higher order non-instantaneous alignment collisions is presented and studied in the asymptotic regime of short collision duration. A first order accurate approximative model is derived as a correction to the instantaneous limit. Rigorous results on its well-posedness and on the instantaneous limit are proven. The approximative model is a system of two equations. An equally accurate scalar approximation is suggested.

Crashworthiness is a key performance measure in the design of safety-critical vehicle panel components such as B-pillars. Finite element (FE) simulations are widely used to evaluate crash responses but remain computationally expensive for large-scale, nonlinear impact scenarios, particularly when integrated into iterative design and optimisation processes. Although machine learning-based surrogate models have been developed for rapid crashworthiness analysis, they exhibit limitations in detailed representation of complex 3-dimensional components. Graph Neural Networks (GNNs) have emerged as a promising solution for processing data with complex structures. However, existing GNN models often lack sufficient accuracy and computational efficiency to meet industrial demands. This paper proposes Recurrent Graph U-Net (ReGUNet), a graph-based surrogate model for crashworthiness analysis of vehicle panel components. By representing FE meshes in graph form, the model naturally accommodates complex irregular structural geometries. Its hierarchical architecture improves computational efficiency and accuracy, while the introduction of recurrence enhances stability of temporal predictions over multiple time steps. A side-impact case study of hot-stamped steel B-pillars with varying geometries is used to generate training dataset. The trained model demonstrates high accuracy in predicting the dynamic deformation behaviour and crashworthiness indicators of previously unseen component designs. ReGUNet achieves over a 52% reduction in the average deformation prediction error relative to baseline methods, together with markedly improved computational efficiency. ReGUNet provides rapid and reliable crashworthiness assessments, which in turn accelerates the design cycle of vehicle panel components.

Imperfect molecular detection in single-cell experiments introduces technical noise that obscures the true stochastic dynamics of gene regulatory networks. While binomial models of molecular capture provide a principled description of imperfect detection, they have so far been analyzed only for simple gene-expression models that do not explicitly account for regulation. Here, we extend binomial models of capture to general gene regulatory networks to understand how imperfect capture reshapes the observed time-dependent statistics of molecular counts. Our results reveal when capture effects correspond to a renormalization of a subset of the kinetic rates and when they cannot be absorbed into effective rates, providing a systematic basis for interpreting noisy single-cell measurements. In particular, we show that rate renormalization depends on the level of regulatory detail in the model. For implicit regulatory models based on promoter state transitions, it arises whenever gene product synthesis does not trigger a promoter state change, as in the absence of promoter-proximal pausing or when pausing is short-lived. For models with explicit transcription factor binding, the same condition holds, together with sufficiently high transcription factor abundance, which in practice requires only a few tens of molecules per cell. In these cases, technical noise reduces the apparent mean burst size of synthesized gene products and accelerates the apparent rates of transcription factor binding reactions. This acceleration becomes stronger as the number of protein species and/or molecules involved in promoter switching increases. These effects hold for gene regulatory networks of arbitrary connectivity and remain valid under time-dependent kinetic rates.

Human bone marrow stromal cells (BMSC) include skeletal stem cells with ground-breaking therapeutic potential. However, BMSC colonies have very heterogeneous in vivo behaviour, due to their different potency; this unpredictability is the greatest hurdle to the development of skeletal regeneration therapies. Colony-level heterogeneity urges a fundamental question: how is it possible that one colony as a collective unit behaves differently from another one? If cell-to-cell variability were just an uncorrelated random process, a million cells in a transplant-bound colony would be enough to yield statistical homogeneity, hence washing out any colony-level traits. A possible answer is that the differences between two originating cells are transmitted to their progenies and collectively persist through an hereditary mechanism. But non-genetic inheritance remains an elusive notion, both at the experimental and at the theoretical level. Here, we prove that heterogeneity in the lineage topology of BMSC clonal colonies is determined by heritable traits that regulate cell-cycle exit. The cornerstone of this result is the definition of a novel entropy of the colony, which measures the hereditary ramifications in the distribution of inactive cells across different branches of the proliferation tree. We measure the entropy in 32 clonal colonies, obtained from single-cell lineage tracing experiments, and show that in the greatest majority of clones this entropy is decisively smaller than that of the corresponding non-hereditary lineage. This result indicates that hereditary epigenetic factors play a major role in determining cycle exit of bone marrow stromal cells.