In this paper, inference for the parametric component of a semiparametric model based on sampling from the posterior profile distribution is thoroughly investigated from the frequentist viewpoint. The higher-order validity of the profile sampler obtained in Cheng and Kosorok [Ann. Statist. 36 (2008)] is extended to semiparametric models in which the infinite dimensional nuisance parameter may not have a root-$n$ convergence rate. This is a nontrivial extension because it requires a delicate analysis of the entropy of the semiparametric models involved. We find that the accuracy of inferences based on the profile sampler improves as the convergence rate of the nuisance parameter increases. Simulation studies are used to verify this theoretical result. We also establish that an exact frequentist confidence interval obtained by inverting the profile log-likelihood ratio can be estimated with higher-order accuracy by the credible set of the same type obtained from the posterior profile distribution. Our theory is verified for several specific examples.
We consider higher order frequentist inference for the parametric component of a semiparametric model based on sampling from the posterior profile distribution. The first order validity of this procedure established by Lee, Kosorok and Fine in [J. American Statist. Assoc. 100 (2005) 960--969] is extended to second-order validity in the setting where the infinite-dimensional nuisance parameter achieves the parametric rate. Specifically, we obtain higher order estimates of the maximum profile likelihood estimator and of the efficient Fisher information. Moreover, we prove that an exact frequenti…
We investigate the problem of deriving posterior concentration rates under different loss functions in nonparametric Bayes. We first provide a lower bound on posterior coverages of shrinking neighbourhoods that relates the metric or loss under which the shrinking neighbourhood is considered, and an intrinsic pre-metric linked to frequentist separation rates. In the Gaussian white noise model, we construct feasible priors based on a spike and slab procedure reminiscent of wavelet thresholding that achieve adaptive rates of contraction under $L^2$ or $L^{\infty}$ metrics when the underlying para…
In this paper, we investigate the asymptotic properties of nonparametric Bayesian mixtures of Betas for estimating a smooth density on $[0,1]$. We consider a parametrization of Beta distributions in terms of mean and scale parameters and construct a mixture of these Betas in the mean parameter, while putting a prior on this scaling parameter. We prove that such Bayesian nonparametric models have good frequentist asymptotic properties. We determine the posterior rate of concentration around the true density and prove that it is the minimax rate of concentration when the true density belongs to …
This paper explores a connection between empirical Bayes posterior distributions and false discovery rate (FDR) control. In the Gaussian sequence model, this work shows that empirical Bayes-calibrated spike and slab posterior distributions allow a correct FDR control under sparsity. Doing so, it offers a frequentist theoretical validation of empirical Bayes methods in the context of multiple testing. Our theoretical results are illustrated with numerical experiments.
Generalized likelihoods are commonly used to obtain consistent estimators with attractive computational and robustness properties. Formally, any generalized likelihood can be used to define a generalized posterior distribution, but an arbitrarily defined "posterior" cannot be expected to appropriately quantify uncertainty in any meaningful sense. In this article, we provide sufficient conditions under which generalized posteriors exhibit concentration, asymptotic normality (Bernstein-von Mises), an asymptotically correct Laplace approximation, and asymptotically correct frequentist coverage. W…
We introduce a prior for the parameters of univariate continuous distributions, based on the Wasserstein information matrix, which is invariant under reparameterisations. We discuss the links between the proposed prior with information geometry. We present sufficient conditions for the propriety of the posterior distribution for general classes of models. We present a simulation study that shows that the induced posteriors have good frequentist properties.
We consider the problem of nonparametric estimation of the drift of a continuously observed one-dimensional diffusion with periodic drift. Motivated by computational considerations, van der Meulen e.a. (2014) defined a prior on the drift as a randomly truncated and randomly scaled Faber-Schauder series expansion with Gaussian coefficients. We study the behaviour of the posterior obtained from the prior from a frequentist asymptotic point of view. If the true data generating drift is smooth, it is proved that the posterior is adaptive with posterior contraction rates for the $L_2$-norm that are…
To the frequentist who computes posteriors, not all priors are useful asymptotically: in this paper Schwartz's 1965 Kullback-Leibler condition is generalised to enable frequentist interpretation of convergence of posterior distributions with the complex models and often dependent datasets in present-day statistical applications. We prove four simple and fully general frequentist theorems, for posterior consistency; for posterior rates of convergence; for consistency of the Bayes factor in hypothesis testing or model selection; and a theorem to obtain confidence sets from credible sets. The lat…
Bayesian methods provide a natural means for uncertainty quantification, that is, credible sets can be easily obtained from the posterior distribution. But is this uncertainty quantification valid in the sense that the posterior credible sets attain the nominal frequentist coverage probability? This paper investigates the frequentist validity of posterior uncertainty quantification based on a class of empirical priors in the sparse normal mean model. In particular, we show that our marginal posterior credible intervals achieve the nominal frequentist coverage probability under conditions sligh…
We study frequentist properties of Bayesian and $L_0$ model selection, with a focus on (potentially non-linear) high-dimensional regression. We propose a construction to study how posterior probabilities and normalized $L_0$ criteria concentrate on the (Kullback-Leibler) optimal model and other subsets of the model space. When such concentration occurs, one also bounds the frequentist probabilities of selecting the correct model, type I and type II errors. These results hold generally, and help validate the use of posterior probabilities and $L_0$ criteria to control frequentist error probabil…
This paper investigates Frequentist consistency properties of the posterior distributions constructed via Generalized Variational Inference (GVI). A number of generic and novel strategies are given for proving consistency, relying on the theory of $Γ$-convergence. Specifically, this paper shows that under minimal regularity conditions, the sequence of GVI posteriors is consistent and collapses to a point mass at the population-optimal parameter value as the number of observations goes to infinity. The results extend to the latent variable case without additional assumptions and hold under miss…
Frequentist coverage of $(1-α)$-highest posterior density (HPD) credible sets is studied in a signal plus noise model under a large class of noise distributions. We consider a specific class of spike-and-slab prior distributions. Different regimes are identified and we derive closed form expressions for the $(1-α)$-HPD on each of these regimes. Similar to the earlier work by Marchand and Strawderman, it is shown that under suitable conditions, the frequentist coverage can drop to $1-3α/2.$
Gaussian process (GP) regression is a powerful interpolation technique due to its flexibility in capturing non-linearity. In this paper, we provide a general framework for understanding the frequentist coverage of point-wise and simultaneous Bayesian credible sets in GP regression. As an intermediate result, we develop a Bernstein von-Mises type result under supremum norm in random design GP regression. Identifying both the mean and covariance function of the posterior distribution of the Gaussian process as regularized $M$-estimators, we show that the sampling distribution of the posterior me…
The following zero-sum game between nature and a statistician blends Bayesian methods with frequentist methods such as p-values and confidence intervals. Nature chooses a posterior distribution consistent with a set of possible priors. At the same time, the statistician selects a parameter distribution for inference with the goal of maximizing the minimum Kullback-Leibler information gained over a confidence distribution or other benchmark distribution. An application to testing a simple null hypothesis leads the statistician to report a posterior probability of the hypothesis that is informed…
A new computation method of frequentist $p$-values and Bayesian posterior probabilities based on the bootstrap probability is discussed for the multivariate normal model with unknown expectation parameter vector. The null hypothesis is represented as an arbitrary-shaped region. We introduce new parametric models for the scaling-law of bootstrap probability so that the multiscale bootstrap method, which was designed for one-sided test, can also computes confidence measures of two-sided test, extending applicability to a wider class of hypotheses. Parameter estimation is improved by the two-step…
A key challenge for modern Bayesian statistics is how to perform scalable inference of posterior distributions. To address this challenge, variational Bayes (VB) methods have emerged as a popular alternative to the classical Markov chain Monte Carlo (MCMC) methods. VB methods tend to be faster while achieving comparable predictive performance. However, there are few theoretical results around VB. In this paper, we establish frequentist consistency and asymptotic normality of VB methods. Specifically, we connect VB methods to point estimates based on variational approximations, called frequenti…
Frequentist-style large-sample properties of Bayesian posterior distributions, such as consistency and convergence rates, are important considerations in nonparametric problems. In this paper we give an analysis of Bayesian asymptotics based primarily on predictive densities. Our analysis is unified in the sense that essentially the same approach can be taken to develop convergence rate results in iid, mis-specified iid, independent non-iid, and dependent data cases.
By representing the range of fair betting odds according to a pair of confidence set estimators, dual probability measures on parameter space called frequentist posteriors secure the coherence of subjective inference without any prior distribution. The closure of the set of expected losses corresponding to the dual frequentist posteriors constrains decisions without arbitrarily forcing optimization under all circumstances. This decision theory reduces to those that maximize expected utility when the pair of frequentist posteriors is induced by an exact or approximate confidence set estimator o…
Given data from a Poisson point process with intensity $(x,y) \mapsto n \mathbf{1}(f(x)\leq y),$ frequentist properties for the Bayesian reconstruction of the support boundary function $f$ are derived. We mainly study compound Poisson process priors with fixed intensity proving that the posterior contracts with nearly optimal rate for monotone and piecewise constant support boundaries and adapts to Hölder smooth boundaries with smoothness index at most one. We then derive a non-standard Bernstein-von Mises result for a compound Poisson process prior and a function space with increasing paramet…
We consider a non-parametric Bayesian model for conditional densities. The model is a finite mixture of normal distributions with covariate dependent multinomial logit mixing probabilities. A prior for the number of mixture components is specified on positive integers. The marginal distribution of covariates is not modeled. We study asymptotic frequentist behavior of the posterior in this model. Specifically, we show that when the true conditional density has a certain smoothness level, then the posterior contraction rate around the truth is equal up to a log factor to the frequentist minimax …
Bayesian inference is attractive for its coherence and good frequentist properties. However, it is a common experience that eliciting a honest prior may be difficult and, in practice, people often take an {\em empirical Bayes} approach, plugging empirical estimates of the prior hyperparameters into the posterior distribution. Even if not rigorously justified, the underlying idea is that, when the sample size is large, empirical Bayes leads to "similar" inferential answers. Yet, precise mathematical results seem to be missing. In this work, we give a more rigorous justification in terms of merg…
We consider inference in the scalar diffusion model $dX_t=b(X_t)dt+σ(X_t)dW_t$ with discrete data $(X_{jΔ_n})_{0\leq j \leq n}$, $n\to \infty,~Δ_n\to 0$ and periodic coefficients. For $σ$ given, we prove a general theorem detailing conditions under which Bayesian posteriors will contract in $L^2$-distance around the true drift function $b_0$ at the frequentist minimax rate (up to logarithmic factors) over Besov smoothness classes. We exhibit natural nonparametric priors which satisfy our conditions. Our results show that the Bayesian method adapts both to an unknown sampling regime and to unkn…
Suppose that a compound Poisson process is observed discretely in time and assume that its jump distribution is supported on the set of natural numbers. In this paper we propose a non-parametric Bayesian approach to estimate the intensity of the underlying Poisson process and the distribution of the jumps. We provide a MCMC scheme for obtaining samples from the posterior. We apply our method on both simulated and real data examples, and compare its performance with the frequentist plug-in estimator proposed by Buchmann and Grübel. On a theoretical side, we study the posterior from the frequent…
In a general class of Bayesian nonparametric models, we prove that the posterior distribution can be asymptotically approximated by a Gaussian process. Our results apply to nonparametric exponential family that contains both Gaussian and non-Gaussian regression, and also hold for both efficient (root-n) and inefficient (non root-n) estimation. Our general approximation theorem does not rely on posterior conjugacy, and can be verified in a class of Gaussian process priors that has a smoothing spline interpretation [59, 44]. In particular, the limiting posterior measure becomes prior-free under …
The major goal of this paper is to study the second order frequentist properties of the marginal posterior distribution of the parametric component in semiparametric Bayesian models, in particular, a second order semiparametric Bernstein-von Mises (BvM) Theorem. Our first contribution is to discover an interesting interference phenomenon between Bayesian estimation and frequentist inferential accuracy: more accurate Bayesian estimation on the nuisance function leads to higher frequentist inferential accuracy on the parametric component. As the second contribution, we propose a new class of dep…
Consider semiparametric models that display local asymptotic exponentiality (Ibragimov and Has'minskii (1981)), an asymptotic property of the likelihood associated with discontinuities of densities. Our interest goes to estimation of the location of such discontinuities while other aspects of the density form a nuisance parameter. It is shown that under certain conditions on model and prior, the posterior distribution displays Bernstein-von Mises-type asymptotic behaviour, with exponential distributions as the limiting sequence. In contrast to regular settings, the maximum likelihood estimator…
In statistical practice, whether a Bayesian or frequentist approach is used in inference depends not only on the availability of prior information but also on the attitude taken toward partial prior information, with frequentists tending to be more cautious than Bayesians. The proposed framework defines that attitude in terms of a specified amount of caution, thereby enabling data analysis at the level of caution desired and on the basis of any prior information. The caution parameter represents the attitude toward partial prior information in much the same way as a loss function represents th…
The penalized profile sampler for semiparametric inference is an extension of the profile sampler method (Lee, Kosorok and Fine, 2005) obtained by profiling a penalized log-likelihood. The idea is to base inference on the posterior distribution obtained by multiplying a profiled penalized log-likelihood by a prior for the parametric component, where the profiling and penalization are applied to the nuisance parameter. Because the prior is not applied to the full likelihood, the method is not strictly Bayesian. A benefit of this approximately Bayesian method is that it circumvents the need to p…
We propose and analyze nonparametric tests of the null hypothesis that a function belongs to a specified parametric family. The tests are based on BIC approximations, π_{BIC}, to the posterior probability of the null model, and may be carried out in either Bayesian or frequentist fashion. We obtain results on the asymptotic distribution of π_{BIC} under both the null hypothesis and local alternatives. One version of π_{BIC}, call it π_{BIC}^*, uses a class of models that are orthogonal to each other and growing in number without bound as sample size, n, tends to infinity. We show that \sqrtn(1…
In this paper, we consider the so-called Shape Invariant Model which stands for the estimation of a function $f^0$ submitted to a random translation of law $g^0$ in a white noise model. We are interested in such a model when the law of the deformations is unknown. We aim to recover the law of the process $\PP_{f^0,g^0}$ as well as $f^0$ and $g^0$. In this perspective, we adopt a Bayesian point of view and find prior on $f$ and $g$ such that the posterior distribution concentrates around $\PP_{f^0,g^0}$ at a polynomial rate when $n$ goes to $+\infty$. We obtain a logarithmic posterior contracti…
The Gibbs reference posterior distribution provides an objective full-Bayesian solution to the problem of prediction of a stationary Gaussian process with Matérn anisotropic kernel. A full-Bayesian approach is possible, because the posterior distribution is expressed as the invariant distribution of a uniformly ergodic Markovian kernel for which we give an explicit expression. In this paper, we show that it is appropriate for the Universal Kriging framework, that is when an unknown function is added to the stationary Gaussian process. We give sufficient conditions for the existence and proprie…
Quantile regression is a powerful data analysis tool that accommodates heterogeneous covariate-response relationships. We find that by coupling the asymmetric Laplace working likelihood with appropriate shrinkage priors, we can deliver posterior inference that automatically adapts to possible sparsity in quantile regression analysis. After a suitable adjustment on the posterior variance, the posterior inference provides asymptotically valid inference under heterogeneity. Furthermore, the proposed approach leads to oracle asymptotic efficiency for the active (nonzero) quantile regression coeffi…
In order to estimate model parameters and circumvent possible difficulties encountered with the likelihood function, we propose to replace the likelihood in the formula of the posterior distribution by a function depending on a contrast. The properties of the contrast-based (CB) posterior distribution and MAP estimator are studied to understand what the consequences of incorporating a contrast in the Bayesian formula are. We show that the proposed method can be used to make frequentist inference and allows the reduction of analytical calculations to get the limit variance matrix of the estimat…
The frequentist behavior of nonparametric Bayes estimates, more specifically, rates of contraction of the posterior distributions to shrinking $L^r$-norm neighborhoods, $1\le r\le\infty$, of the unknown parameter, are studied. A theorem for nonparametric density estimation is proved under general approximation-theoretic assumptions on the prior. The result is applied to a variety of common examples, including Gaussian process, wavelet series, normal mixture and histogram priors. The rates of contraction are minimax-optimal for $1\le r\le2$, but deteriorate as $r$ increases beyond 2. In the cas…
We consider full Bayesian inference in the multivariate normal mean model in the situation that the mean vector is sparse. The prior distribution on the vector of means is constructed hierarchically by first choosing a collection of nonzero means and next a prior on the nonzero values. We consider the posterior distribution in the frequentist set-up that the observations are generated according to a fixed mean vector, and are interested in the posterior distribution of the number of nonzero components and the contraction of the posterior distribution to the true mean vector. We find various co…
Bayesian density deconvolution using nonparametric prior distributions is a useful alternative to the frequentist kernel based deconvolution estimators due to its potentially wide range of applicability, straightforward uncertainty quantification and generalizability to more sophisticated models. This article is the first substantive effort to theoretically quantify the behavior of the posterior in this recent line of research. In particular, assuming a known supersmooth error density, a Dirichlet process mixture of Normals on the true density leads to a posterior convergence rate same as the …
We study frequentist asymptotic properties of Bayesian procedures for high-dimensional Gaussian sparse regression when unknown nuisance parameters are involved. Nuisance parameters can be finite-, high-, or infinite-dimensional. A mixture of point masses at zero and continuous distributions is used for the prior distribution on sparse regression coefficients, and appropriate prior distributions are used for nuisance parameters. The optimal posterior contraction of sparse regression coefficients, hampered by the presence of nuisance parameters, is also examined and discussed. It is shown that t…
Reacting against the limitation of statistics to decision procedures, R. A. Fisher proposed for inductive reasoning the use of the fiducial distribution, a parameter-space distribution of epistemological probability transferred directly from limiting relative frequencies rather than computed according to the Bayes update rule. The proposal is developed as follows using the confidence measure of a scalar parameter of interest. (With the restriction to one-dimensional parameter space, a confidence measure is essentially a fiducial probability distribution free of complications involving ancillar…
In frequentist inference, minimizing the Hellinger distance between a kernel density estimate and a parametric family produces estimators that are both robust to outliers and statistically efficienty when the parametric model is correct. This paper seeks to extend these results to the use of nonparametric Bayesian density estimators within disparity methods. We propose two estimators: one replaces the kernel density estimator with the expected posterior density from a random histogram prior; the other induces a posterior over parameters through the posterior for the random histogram. We show t…
Approximate confidence distribution computing (ACDC) offers a new take on the rapidly developing field of likelihood-free inference from within a frequentist framework. The appeal of this computational method for statistical inference hinges upon the concept of a confidence distribution, a special type of estimator which is defined with respect to the repeated sampling principle. An ACDC method provides frequentist validation for computational inference in problems with unknown or intractable likelihoods. The main theoretical contribution of this work is the identification of a matching condit…
Standard Bayesian inference is known to be sensitive to model misspecification, leading to unreliable uncertainty quantification and poor predictive performance. However, finding generally applicable and computationally feasible methods for robust Bayesian inference under misspecification has proven to be a difficult challenge. An intriguing, easy-to-use, and widely applicable approach is to use bagging on the Bayesian posterior ("BayesBag"); that is, to use the average of posterior distributions conditioned on bootstrapped datasets. In this paper, we develop the asymptotic theory of BayesBag,…
Composite likelihoods are increasingly used in applications where the full likelihood is analytically unknown or computationally prohibitive. Although the maximum composite likelihood estimator has frequentist properties akin to those of the usual maximum likelihood estimator, Bayesian inference based on composite likelihoods has yet to be explored. In this paper we investigate the use of the Metropolis--Hastings algorithm to compute a pseudo-posterior distribution based on the composite likelihood. Two methodologies for adjusting the algorithm are presented and their performance on approximat…
