A Bayesian nonparametric method for unimodal densities on the real line is provided by considering a class of species sampling mixture models containing random densities that are unimodal and not necessarily symmetric. This class of densities generalize the model considered by Brunner (1992, Statist. Probab. Lett.), in which the Dirichlet process is replaced by a more general class of species sampling models. A novel and explicit characterization of the posterior distribution via a finite mixture of two dependent $\mathbf{S}$-paths is derived. This results in a closed-form and tractable Bayes estimator for any unimodal density in terms of a finite sum over two $\mathbf{S}$-paths. To approximate this class of estimates, we propose a sequential importance sampling algorithm that exploits the idea of the accelerated path sampler, an efficient path-sampling Markov chain Monte Carlo method. Numerical simulations are given to demonstrate the practicality and the effectiveness of our methodology.
We consider nonparametric measurement error density deconvolution subject to heteroscedastic measurement errors as well as symmetry about zero and shape constraints, in particular unimodality. The problem is motivated by applications where the observed data are estimated effect sizes from regressions on multiple factors, where the target is the distribution of the true effect sizes. We exploit the fact that any symmetric and unimodal density can be expressed as a mixture of symmetric uniform densities, and model the mixing density in a new way using a Dirichlet process location-mixture of Gamm…
Let $\mathbf {X}=\{X_t, t=1,2,... \}$ be a stationary Gaussian random process, with mean $EX_t=μ$ and covariance function $γ(τ)=E(X_t-μ)(X_{t+τ}-μ)$. Let $f(λ)$ be the corresponding spectral density; a stationary Gaussian process is said to be long-range dependent, if the spectral density $f(λ)$ can be written as the product of a slowly varying function $\tilde{f}(λ)$ and the quantity $λ^{-2d}$. In this paper we propose a novel Bayesian nonparametric approach to the estimation of the spectral density of $\mathbf {X}$. We prove that, under some specific assumptions on the prior distribution, ou…
A nonparametric Bayesian extension of Factor Analysis (FA) is proposed where observed data $\mathbf{Y}$ is modeled as a linear superposition, $\mathbf{G}$, of a potentially infinite number of hidden factors, $\mathbf{X}$. The Indian Buffet Process (IBP) is used as a prior on $\mathbf{G}$ to incorporate sparsity and to allow the number of latent features to be inferred. The model's utility for modeling gene expression data is investigated using randomly generated data sets based on a known sparse connectivity matrix for E. Coli, and on three biological data sets of increasing complexity.
In a meta-analysis, it is important to specify a model that adequately describes the effect-size distribution of the underlying population of studies. The conventional normal fixed-effect and normal random-effects models assume a normal effect-size population distribution, conditionally on parameters and covariates. For estimating the mean overall effect size, such models may be adequate, but for prediction they surely are not if the effect size distribution exhibits non-normal behavior. To address this issue, we propose a Bayesian nonparametric meta-analysis model, which can describe a wider …
Given data from a Poisson point process with intensity $(x,y) \mapsto n \mathbf{1}(f(x)\leq y),$ frequentist properties for the Bayesian reconstruction of the support boundary function $f$ are derived. We mainly study compound Poisson process priors with fixed intensity proving that the posterior contracts with nearly optimal rate for monotone and piecewise constant support boundaries and adapts to Hölder smooth boundaries with smoothness index at most one. We then derive a non-standard Bernstein-von Mises result for a compound Poisson process prior and a function space with increasing paramet…
The performance of Least Squares (LS) estimators is studied in isotonic, unimodal and convex regression. Our results have the form of sharp oracle inequalities that account for the model misspecification error. In isotonic and unimodal regression, the LS estimator achieves the nonparametric rate $n^{-2/3}$ as well as a parametric rate of order $k/n$ up to logarithmic factors, where $k$ is the number of constant pieces of the true parameter. In univariate convex regression, the LS estimator satisfies an adaptive risk bound of order $q/n$ up to logarithmic factors, where $q$ is the number of aff…
The paper is devoted to the problem of estimation of a univariate component in a heteroscedastic nonparametric multiple regression under the mean integrated squared error (MISE) criteria. The aim is to understand how the scale function should be used for estimation of the univariate component. It is known that the scale function does not affect the rate of the MISE convergence, and as a result sharp constants are explored. The paper begins with developing a sharp-minimax theory for a pivotal model $Y=f(X)+σ(X,\mathbf{Z})\varepsilon$, where $\varepsilon$ is standard normal and independent of th…
In recent years, Bayesian nonparametric statistics has gathered extraordinary attention. Nonetheless, a relatively little amount of work has been expended on Bayesian nonparametric hypothesis testing. In this paper, a novel Bayesian nonparametric approach to the two-sample problem is established. Precisely, given two samples $\mathbf{X}=X_1,\ldots,X_{m_1}$ $\overset {i.i.d.} \sim F$ and $\mathbf{Y}=Y_1,\ldots,Y_{m_2} \overset {i.i.d.} \sim G$, with $F$ and $G$ being unknown continuous cumulative distribution functions, we wish to test the null hypothesis $\mathcal{H}_0:~F=G$. The method is bas…
Density regression provides a flexible strategy for modeling the distribution of a response variable $Y$ given predictors $\mathbf{X}=(X_1,\ldots,X_p)$ by letting that the conditional density of $Y$ given $\mathbf{X}$ as a completely unknown function and allowing its shape to change with the value of $\mathbf{X}$. The number of predictors $p$ may be very large, possibly much larger than the number of observations $n$, but the conditional density is assumed to depend only on a much smaller number of predictors, which are unknown. In addition to estimation, the goal is also to select the importa…
In the framework of an abstract statistical model we discuss how to use the solution of one estimation problem ({\it Problem A}) in order to construct an estimator in another, completely different, {\it Problem B}. As a solution of {\it Problem A} we understand a data-driven selection from a given family of estimators $\mathbf{A}(\mH)=\big\{\widehat{A}_\mh, \mh\in\mH\big\}$ and establishing for the selected estimator so-called oracle inequality. %parameterized by some se t$\mH$. If $\hat{\mh}\in\mH$ is the selected parameter and $\mathbf{B}(\mH)=\big\{\widehat{B}_\mh, \mh\in\mH\big\}$ is an es…
We introduce a new approach to deciding the number of clusters. The approach is applied to Optimally Tuned Robust Improper Maximum Likelihood Estimation (OTRIMLE; Coretto and Hennig 2016) of a Gaussian mixture model allowing for observations to be classified as "noise", but it can be applied to other clustering methods as well. The quality of a clustering is assessed by a statistic $Q$ that measures how close the within-cluster distributions are to elliptical unimodal distributions that have the only mode in the mean. This nonparametric measure allows for non-Gaussian clusters as long as they …
Let $\mathbf{Q}=(Q_1,\ldots,Q_n)$ be a random vector drawn from the uniform distribution on the set of all $n!$ permutations of $\{1,2,\ldots,n\}$. Let $\mathbf{Z}=(Z_1,\ldots,Z_n)$, where $Z_j$ is the mean zero variance one random variable obtained by centralizing and normalizing $Q_j$, $j=1,\ldots,n$. Assume that $\mathbf {X}_i,i=1,\ldots ,p$ are i.i.d. copies of $\frac{1}{\sqrt{p}}\mathbf{Z}$ and $X=X_{p,n}$ is the $p\times n$ random matrix with $\mathbf{X}_i$ as its $i$th row. Then $S_n=XX^*$ is called the $p\times n$ Spearman's rank correlation matrix which can be regarded as a high dimen…
Density functions that represent sample data are often multimodal, i.e. they exhibit more than one maximum. Typically this behavior is taken to indicate that the underlying data deserves a more detailed representation as a mixture of densities with individually simpler structure. The usual specification of a component density is quite restrictive, with log-concave the most general case considered in the literature, and Gaussian the overwhelmingly typical case. It is also necessary to determine the number of mixture components \emph{a priori}, and much art is devoted to this. Here, we introduce…
Mutual information is a measure of the dependence between random variables that has been used successfully in myriad applications in many fields. Generalized mutual information measures that go beyond classical Shannon mutual information have also received much interest in these applications. We derive the mean squared error convergence rates of kernel density-based plug-in estimators of general mutual information measures between two multidimensional random variables $\mathbf{X}$ and $\mathbf{Y}$ for two cases: 1) $\mathbf{X}$ and $\mathbf{Y}$ are continuous; 2) $\mathbf{X}$ and $\mathbf{Y}$ …
