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MPGE:用于分子分类解释的多视角图解释器

MPGE: A Multi-Perspective Graph Explainer for Molecular Classification Explanation

Mahtab Sarvmaili

arXiv 2610.12039首次发表:更新:

发表机构

Dalhousie University(达尔豪斯大学)

机构由 AI 辅助整理,请以论文原文为准。

AI 中文总结

该研究提出多视角图解释器MPGE,针对冻结分类器统一事实支撑、反事实敏感性和exemplar容忍度,在多个分子数据集上验证了其解释性能。

AI 中文摘要

图神经网络(GNN)可从化学图数据预测分子性质,但预测精度无法解释图信息如何支撑单个决策。紧凑的预测保留型理由未必能揭示哪些变更会反转决策,或模型可容忍哪些修改。我们提出多视角图解释器(MPGE),针对冻结分类器统一了事实支撑、反事实敏感性和 exemplar 容忍度。事实视角(原称原型(PT))寻求具有相同标签和所需置信度的紧凑保留边集;反事实(CF)解释寻求有界的预测变更删除;exemplar(EXE)解释寻求保留标签和置信度的非平凡有界删除。共享的约束公式连接了预测行为、紧凑性和编辑成本,而独立的目标生成三个视角。我们对 CF-GNNExplainer 进行图分类扩展,学习对称边排名并验证离散候选,记录未成功的搜索。单独的 BBBP 片段后端返回经 RDKit 净化的分子。我们在 MUTAG、致突变性(Mutagenicity)、AIDS、COX2_MD 和 BBBP 上评估主要的 GCN 实现,使用语义覆盖率、条件质量、稳定性和运行时间指标。成功的事实掩码在各数据集上平均保留了输入边的 8.6%--15.5%;有界反事实覆盖率为 4.8%--67.6%,exemplar 保留覆盖率为 98.9%--100.0%。探索性控制揭示了硬投影和保留节点信息的影响。定量比较和分子可视化表征了模型的支撑、敏感性和容忍度,且未将其视为已验证的化学机制。

英文摘要

Graph neural networks (GNNs) predict molecular properties from chemical graph data, but predictive accuracy does not explain how graph information supports an individual decision. A compact prediction-preserving rationale does not necessarily reveal which changes reverse the decision or which modifications the model tolerates. We propose the Multi-Perspective Graph Explainer (MPGE), unifying factual support, counterfactual sensitivity, and exemplar tolerance for a frozen classifier. The factual view, originally termed prototype (PT), seeks a compact retained edge set with the same label and required confidence. Counterfactual (CF) explanations seek bounded prediction-changing deletions; exemplar (EXE) explanations seek non-trivial bounded deletions that preserve the label and confidence. A shared constrained formulation connects prediction behavior, compactness, and edit cost, while separate objectives generate the three views. Our graph-classification extension of CF-GNNExplainer learns symmetric edge rankings and verifies discrete candidates, recording unsuccessful searches. A separate BBBP fragment backend returns RDKit-sanitized molecules. We evaluate the primary GCN implementation on MUTAG, Mutagenicity, AIDS, COX2_MD, and BBBP using semantic coverage, conditional quality, stability, and runtime. Successful factual masks retained 8.6%--15.5% of input edges on average across datasets; bounded counterfactual coverage was 4.8%--67.6%, and exemplar preservation coverage was 98.9%--100.0%. Exploratory controls reveal the influence of hard projection and retained node information. Quantitative comparisons and molecular visualizations characterize model support, sensitivity, and tolerance without treating them as validated chemical mechanisms.

论文原文

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