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免疫世界模型:用于多尺度预测与治疗假设生成

An immune world model for multiscale forecasting and therapeutic hypothesis generation

Taoyong Cui, Xi Wang, Zonghang Li, Jinchao Ding, Lingsen You, Yuzhi Xu, Wanghan Xu, Fang Wu, Kejun Ying, Wanli Ouyang, Pheng Ann Heng, Ling Yang, Zhenfei Yin, Yingcheng Wu

arXiv 2609.14709首次发表:更新:

发表机构

PhAI Labs, Inc.; The Chinese University of Hong Kong; New York University; Stanford University School of Medicine; Shanghai Jiao Tong University; Stanford University; Harvard University; Princeton University(PhAI实验室公司; 香港中文大学; 纽约大学; 斯坦福大学医学院; 上海交通大学; 斯坦福大学; 哈佛大学; 普林斯顿大学)

机构由 AI 辅助整理,请以论文原文为准。

AI 中文总结

本文提出免疫世界模型,一种多尺度动作条件模型,通过进化AI科学家构建,用于预测免疫干预效果并生成可测试的治疗假设,如IL-36γ加SIRPα抑制。

AI 中文摘要

免疫疗法作用于细胞内在程序、组织生态系统和患者特异性免疫状态,然而大多数预测器分别处理这些尺度。我们使用受治理的进化AI科学家构建了免疫世界模型,这是一种动作条件模型,学习干预如何在细胞、组织和个体层面移动免疫状态。构建免疫世界模型的科学家搜索了候选架构和工作流程,所得世界模型在独立确认之前被冻结。冻结后的模型泛化到未见过的干预和生物学情境,恢复了干预特异性的细胞程序,整合了细胞和组织信息以改善生态系统和患者反应预测,并预测了未见过的扰动组合。免疫世界模型引导的分析随后将实测扰动与跨轴推断相结合,提名IL-36γ加SIRPα抑制作为互补轴治疗假设,而受治理的自我修正审计拒绝了所有筛选的细胞因子对。免疫世界模型提供了一个多尺度免疫模拟框架,连接了AI科学家驱动的模型构建、干预预测和可前瞻性测试的治疗假设生成。

英文摘要

Immune therapies act across cell-intrinsic programs, tissue ecosystems, and patient-specific immune states, yet most predictors address these scales separately. We used a governed evolutionary AI Scientist to construct the Immune World Model, an action-conditioned model that learns how interventions move immune states across cellular, tissue, and individual levels. The Immune World Model--building Scientist searched candidate architectures and workflows, and the resulting world model was frozen before independent confirmation. The frozen model generalized to unseen interventions and biological contexts, recovered intervention-specific cellular programs, integrated cell and tissue information to improve ecosystem and patient-response prediction, and forecast unseen perturbation combinations. Immune World Model--guided analysis then combined measured perturbations with cross-axis inference to nominate IL-36$γ$ plus SIRP$α$ inhibition as a complementary-axis therapeutic hypothesis, whereas a governed self-correction audit rejected every screened cytokine pair. The Immune World Model provides a framework for multiscale immune simulation that connects AI Scientist-driven model construction, intervention forecasting, and the generation of prospectively testable therapeutic hypotheses.

论文原文

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