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VizIt:用于在线探索单细胞、空间与遗传数据的多视图框架

VizIt: A multi-view framework for exploring single-cell, spatial, and genetic data online

Chenhang Christopher Zhang, Yanqing Lou, Jie Yuan, Mingming Lu, Jacob Parker, Himanshu Chintalapudi, Zechuan Lin, Clemens R. Scherzer, Yuxuan Hu, Ruifeng Hu, Xianjun Dong

arXiv 2609.04658首次发表:更新:

发表机构

Aligning Science Across Parkinson’s (ASAP) Collaborative Research Network; Adams Center for Parkinson’s Disease Research, Yale School of Medicine; Department of Neurology, Yale School of Medicine; Concord Academy; College of Engineering, Northeastern University; Department of Genetics, Yale School of Medicine; Department of Neuroscience, Yale School of Medicine(帕金森病科学对齐协作研究网络; 耶鲁医学院亚当斯帕金森病研究中心; 耶鲁医学院神经学系; 康科德学院; 东北大学工程学院; 耶鲁医学院遗传学系; 耶鲁医学院神经科学系)

机构由 AI 辅助整理,请以论文原文为准。

AI 中文总结

针对多组学研究中交互式探索碎片化的问题,提出开源多视图框架VizIt,连接多类核心视图实现跨视角无缝导航,并以帕金森细胞图谱演示其应用。

AI 中文摘要

多组学研究日益需要从互补的生物学视角检查数据,但交互式探索在不同模态和工具间仍呈碎片化。我们提出VizIt,一个用于多组学(单细胞转录组、空间转录组、表观基因组及遗传数据)多视图探索的开源框架,它连接以基因、细胞类型、条件、空间、基因组区域及变异为中心的视图,实现生物学视角间的无缝导航,我们通过帕金森细胞图谱(一个可定制的交互式多组学资源)演示了VizIt。

英文摘要

Multi-omic studies increasingly require data to be examined from complementary biological perspectives, yet interactive exploration remains fragmented across modalities and tools. We present VizIt, an open-source framework for multi-view exploration of single-cell and spatial transcriptomic, epigenomic and genetic data. VizIt connects gene-, cell type-, condition-, spatial-, genomic region- and variant-centered views, enabling seamless navigation across biological perspectives. We demonstrate VizIt through the Parkinson's Cell Atlas, a customizable interactive multi-omic resource.

论文原文

arXiv 摘要页 · PDF 原文 · HTML 原文

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