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课程感知的插值后优化:现实缺失场景下的学习型生理时间序列补全

Curriculum-Aware Interpolate-then-Refine: Learned Physiological Time-Series Imputation under Realistic Missingness

Yu-Chao Huang, Haochen Zhang, Nicholas Konz, Tianlong Chen

arXiv 2608.21207首次发表:更新:

AI 中文总结

针对生理时间序列补全中通用模型的不足,提出CAIR两阶段框架,在多数据集多缺失机制下均实现最优性能,且能同时兼顾重建误差与临床负担指标。

AI 中文摘要

生理时间序列(动脉血压、血糖等)的补全对于解决临床数据中普遍存在的缺失问题至关重要。然而现代补全方法在该领域表现不佳:一项近期基准测试发现,在存在现实间隙的真实临床信号上,简单线性插值的性能优于所有学习型补全器。我们表明,这反映了通用补全器所忽略的生理缺失的两个特性:间隙可能出现在信号临床极值而非典型值时,且间隙长度可轻易跨越数个数量级。为此,我们提出了课程感知的插值后优化(CAIR),一种用于生理时间序列补全的两阶段框架。我们的核心动机是学习一条粗略的基础曲线,然后反复将其修正至符合生理实际,而非单次通过预测间隙。因此,CAIR将双向GRU插值器与Transformer优化器相结合,后者在三次连续迭代中修正自身的估计值,在与信号无关的宽范围随机间隙课程下联合训练。我们按间隙长度和缺失机制(MCAR、MAR、NMAR)对补全器进行评估,而非采用单一平均值,CAIR在连续血糖监测(AI-READI)和重症监护动脉血压(MIMIC-III)的所有机制下均为最准确的模型。其与最强基线的优势随难度提升而增大,从MCAR下的9%到值相关缺失下的19%,而通用学习型补全器在该场景下最弱。我们进一步表明,仅低重建误差无法恢复临床医生所依赖的负担指标:与CAIR误差匹配的插值无法保留这些指标,恢复这些指标的补全器准确性则低得多,而CAIR是唯一在两个维度上均排名最优的模型之一。

英文摘要

Imputing physiological time series (arterial blood pressure, blood glucose, etc.) is essential for addressing the missingness that pervades clinical data. Yet modern imputation methods perform poorly in this domain: a recent benchmark found that simple linear interpolation outperformed every learned imputer on real-world clinical signals with realistic gaps. We show that this reflects two properties of physiological missingness that generic imputers ignore: gaps may occur when the signal is clinically extreme rather than typical, and gap lengths can easily span orders of magnitude. To this end, we introduce Curriculum-Aware Interpolate-then-Refine (CAIR), a two-stage framework for physiological time-series imputation. Our key motivation is to learn a coarse base curve and then repeatedly correct it toward physiological realism, rather than predict a gap in a single pass. Consequently, CAIR couples a bidirectional-GRU interpolator with a Transformer refiner that corrects its own estimate over three successive passes, trained jointly under a broad, signal-agnostic random-gap curriculum. We evaluate imputers stratified by gap length and missingness mechanism (MCAR, MAR, NMAR) rather than by a single average, and CAIR is the most accurate under every mechanism on continuous glucose monitoring (AI-READI) and arterial pressure in intensive care (MIMIC-III). Its margin over the strongest baseline grows with difficulty, from 9% under MCAR to 19% under value-dependent dropout, where generic learned imputers are weakest. We further show low reconstruction error alone does not recover the burden metrics clinicians act on: interpolants matching CAIR's error fail to preserve those metrics, imputers that recover them are far less accurate, and CAIR alone ranks among the best on both axes.

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