AI 中文总结
Phylogeny.fr是面向非专业人士的系统发育分析平台，经重大改版后整合先进工具，新增交互式查看与聚类功能，为相关研究者提供便捷可靠的系统发育分析服务。
AI 中文摘要
系统发育分析已成为生物学多个领域的标准方法，但系统发育方法与软件日益复杂仍是非专业人士的主要障碍。自2008年推出以来，Phylogeny.fr提供了无需本地软件安装、采用广泛认可方法构建系统发育树的易用网络平台。本文介绍该服务的重大重新设计与现代化：新版本整合了最先进工具，同时保留历史程序以支持旧版，依托现代网络架构与高性能计算（HPC）基础设施；新的基于React的交互式查看工具ReSeqt与Reactree可直观探索比对结果与系统发育树，并生成适合发表的可视化内容；配套工具Blast-Explorer也已更新，新增聚类选项。通过结合易用性、方法灵活性与现代系统发育工具，新版Phylogeny.fr满足了研究人员、教师及学生对便捷可靠系统发育分析的需求。
英文摘要
Phylogenetic analysis has become a standard approach across many areas of biology, yet the growing complexity of phylogenetic methods and software remains a major obstacle for non-specialists. Since its launch in 2008, Phylogeny.fr has provided an accessible web platform for building phylogenetic trees using widely accepted methods without requiring local software installation. Here, we present a major redesign and modernization of the service. The new version integrates state-of-the-art tools while preserving historical programs for legacy support and relies on modern web architecture and HPC infrastructure. New interactive React-based viewers, ReSeqt and Reactree, provide intuitive exploration and publication-ready visualization of alignments and trees. The Blast-Explorer companion tool has also been updated and now includes clustering options. By combining ease of use, methodological flexibility, and modern phylogenetic tools, the new Phylogeny.fr addresses the needs of researchers, teachers, and students seeking accessible and reliable phylogenetic analyses.
