Despite the ubiquity of multiway data across scientific domains, there are few performant and user-friendly methods that fit non-standard nonnegative tensor factorization models tailored to the data at-hand. Researchers may use gradient-based automatic differentiation, which often struggles under nonnegative constraints, choose between a limited set of methods with mature implementations, or implement their own model from scratch. As an alternative, we introduce NNEinFact, an einsum-based multiplicative update algorithm that fits any nonnegative tensor factorization expressible as a tensor contraction by minimizing one of many user-specified loss functions, including the $(α,β)$-divergence. To use NNEinFact, the researcher specifies their model with a string. NNEinFact converges to a stationary point of the loss, supports missing data, and fits to tensors with hundreds of millions of entries in seconds. Empirically, NNEinFact fits custom models which outperform standard ones in prediction tasks on real-world tensor data by over $37\%$ and attains less than half the test loss of gradient-based methods while converging up to 90 times faster. Software is publicly available at https://github.com/jhood3/einfact.
Identifying recurring patterns in high-dimensional time series data is an important problem in many scientific domains. A popular model to achieve this is convolutive nonnegative matrix factorization (CNMF), which extends classic nonnegative matrix factorization (NMF) to extract short-lived temporal motifs from a long time series. Prior work has typically fit this model by multiplicative parameter updates---an approach widely considered to be suboptimal for NMF, especially in large-scale data applications. Here, we describe how to extend two popular and computationally scalable NMF algorithms-…
University of California Los Angeles（加利福尼亚大学洛杉矶分校）；Harvey Mudd College（哈维穆德学院）
Nonnegative matrix factorization (NMF) has found many applications including topic modeling and document analysis. Hierarchical NMF (HNMF) variants are able to learn topics at various levels of granularity and illustrate their hierarchical relationship. Recently, nonnegative tensor factorization (NTF) methods have been applied in a similar fashion in order to handle data sets with complex, multi-modal structure. Hierarchical NTF (HNTF) methods have been proposed, however these methods do not naturally generalize their matrix-based counterparts. Here, we propose a new HNTF model which directly …
Qingdao University（青岛大学）；University of Electronic Science and Technology of China（电子科技大学）；University of Kentucky（肯塔基大学）
Existing nonnegative matrix factorization methods focus on learning global structure of the data to construct basis and coefficient matrices, which ignores the local structure that commonly exists among data. In this paper, we propose a new type of nonnegative matrix factorization method, which learns local similarity and clustering in a mutually enhancing way. The learned new representation is more representative in that it better reveals inherent geometric property of the data. Nonlinear expansion is given and efficient multiplicative updates are developed with theoretical convergence guaran…
University of Rochester（罗切斯特大学）；Rochester Institute of Technology（罗切斯特理工学院）
Nonnegative Matrix Factorization (NMF) is an unsupervised learning algorithm that produces a linear, parts-based approximation of a data matrix. NMF constructs a nonnegative low rank basis matrix and a nonnegative low rank matrix of weights which, when multiplied together, approximate the data matrix of interest using some cost function. The NMF algorithm can be modified to include auxiliary constraints which impose task-specific penalties or restrictions on the cost function of the matrix factorization. In this paper we propose a new NMF algorithm that makes use of non-data dependent auxiliar…
National University of Singapore（新加坡国立大学）；Institute of High Performance Computing, Agency for Science, Technology and Research（新加坡科技研究局高性能计算研究院）；Singapore University of Technology and Design（新加坡科技设计大学）
Given a matrix $X\in \mathbb{R}^{m\times n}_+$ with non-negative entries, the cone factorization problem over a cone $\mathcal{K}\subseteq \mathbb{R}^k$ concerns computing $\{ a_1,\ldots, a_{m} \} \subseteq \mathcal{K}$ and $\{ b_1,\ldots, b_{n} \} \subseteq~\mathcal{K}^*$ belonging to its dual so that $X_{ij} = \langle a_i, b_j \rangle$ for all $i\in [m], j\in [n]$. Cone factorizations are fundamental to mathematical optimization as they allow us to express convex bodies as feasible regions of linear conic programs. In this paper, we introduce and analyze the symmetric-cone multiplicative upd…
A convergent algorithm for nonnegative matrix factorization with orthogonality constraints imposed on both factors is proposed in this paper. This factorization concept was first introduced by Ding et al. with intent to further improve clustering capability of NMF. However, as the original algorithm was developed based on multiplicative update rules, the convergence of the algorithm cannot be guaranteed. In this paper, we utilize the technique presented in our previous work to develop the algorithm and prove that it converges to a stationary point inside the solution space.
Université de Mons（蒙斯大学）；Ecole Centrale de Nantes（南特中央理工学院）
Nonnegative matrix factorization (NMF) is the problem of approximating an input nonnegative matrix, $V$, as the product of two smaller nonnegative matrices, $W$ and $H$. In this paper, we introduce a general framework to design multiplicative updates (MU) for NMF based on $β$-divergences ($β$-NMF) with disjoint equality constraints, and with penalty terms in the objective function. By disjoint, we mean that each variable appears in at most one equality constraint. Our MU satisfy the set of constraints after each update of the variables during the optimization process, while guaranteeing that t…
CNRS（法国国家科学研究中心）；LTCI（电信与信息处理实验室）；Télécom ParisTech（巴黎高等电信学院）；IRCCyN（南特通信与控制研究院）；École Centrale de Nantes（南特中央理工学院）
This paper describes algorithms for nonnegative matrix factorization (NMF) with the beta-divergence (beta-NMF). The beta-divergence is a family of cost functions parametrized by a single shape parameter beta that takes the Euclidean distance, the Kullback-Leibler divergence and the Itakura-Saito divergence as special cases (beta = 2,1,0, respectively). The proposed algorithms are based on a surrogate auxiliary function (a local majorization of the criterion function). We first describe a majorization-minimization (MM) algorithm that leads to multiplicative updates, which differ from standard h…
Qingdao University（青岛大学）；Harbin Institute of Technology（哈尔滨工业大学）；University of Electronic Science and Technology of China（电子科技大学）；University of Kentucky（肯塔基大学）
Nonnegative matrix factorization (NMF) has been widely studied in recent years due to its effectiveness in representing nonnegative data with parts-based representations. For NMF, a sparser solution implies better parts-based representation.However, current NMF methods do not always generate sparse solutions.In this paper, we propose a new NMF method with log-norm imposed on the factor matrices to enhance the sparseness.Moreover, we propose a novel column-wisely sparse norm, named $\ell_{2,\log}$-(pseudo) norm to enhance the robustness of the proposed method.The $\ell_{2,\log}$-(pseudo) norm i…
We show how to incorporate information from labeled examples into nonnegative matrix factorization (NMF), a popular unsupervised learning algorithm for dimensionality reduction. In addition to mapping the data into a space of lower dimensionality, our approach aims to preserve the nonnegative components of the data that are important for classification. We identify these components from the support vectors of large-margin classifiers and derive iterative updates to preserve them in a semi-supervised version of NMF. These updates have a simple multiplicative form like their unsupervised counter…
Université de Mons（蒙斯大学）；Faculté Polytechnique（理工学院）；National University of Singapore（新加坡国立大学）
Nonnegative matrix factorization (NMF) is a linear dimensionality reduction technique for analyzing nonnegative data. A key aspect of NMF is the choice of the objective function that depends on the noise model (or statistics of the noise) assumed on the data. In many applications, the noise model is unknown and difficult to estimate. In this paper, we define a multi-objective NMF (MO-NMF) problem, where several objectives are combined within the same NMF model. We propose to use Lagrange duality to judiciously optimize for a set of weights to be used within the framework of the weighted-sum ap…
Harvey Mudd College（哈维穆德学院）；Colorado State Univ.（科罗拉多州立大学）；Univ. of Illinois Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；Cal. State Univ. Channel Islands（加州州立大学海峡群岛分校）；Wofford College（沃福德学院）；New York Univ.（纽约大学）；Univ. of Alabama（阿拉巴马大学）；Univ. of Cal., Los Angeles（加州大学洛杉矶分校）；Boston Medical Cent.（波士顿医疗中心）；Southern Methodist Univ.（南卫理公会大学）；Occidental College（西方学院）
We propose new semi-supervised nonnegative matrix factorization (SSNMF) models for document classification and provide motivation for these models as maximum likelihood estimators. The proposed SSNMF models simultaneously provide both a topic model and a model for classification, thereby offering highly interpretable classification results. We derive training methods using multiplicative updates for each new model, and demonstrate the application of these models to single-label and multi-label document classification, although the models are flexible to other supervised learning tasks such as …
Nonnegative Matrix Factorization through Cone Collapse
Department of Statistics（统计学系）；Wisconsin Institute of Discovery（威斯康星发现研究所）；University of Wisconsin-Madison（威斯康星大学麦迪逊分校）；Department of Biostatistics and Medical Informatics（生物统计学与医学信息学系）
Institut Charles Delaunay (CNRS)（查尔斯·德洛奈研究所（法国国家科学研究中心））；Université de Technologie de Troyes（特鲁瓦技术大学）；LITIS lab（LITIS实验室）；Université de Rouen（鲁昂大学）；Centre de Recherche en Automatique de Nancy (CNRS)（南锡自动化研究中心（法国国家科学研究中心））；Université de Lorraine（洛林大学）
The nonnegative matrix factorization (NMF) is widely used in signal and image processing, including bio-informatics, blind source separation and hyperspectral image analysis in remote sensing. A great challenge arises when dealing with a nonlinear formulation of the NMF. Within the framework of kernel machines, the models suggested in the literature do not allow the representation of the factorization matrices, which is a fallout of the curse of the pre-image. In this paper, we propose a novel kernel-based model for the NMF that does not suffer from the pre-image problem, by investigating the …
The multiplicative update (MU) algorithm has been extensively used to estimate the basis and coefficient matrices in nonnegative matrix factorization (NMF) problems under a wide range of divergences and regularizers. However, theoretical convergence guarantees have only been derived for a few special divergences without regularization. In this work, we provide a conceptually simple, self-contained, and unified proof for the convergence of the MU algorithm applied on NMF with a wide range of divergences and regularizers. Our main result shows the sequence of iterates (i.e., pairs of basis and c…
National University of Singapore（新加坡国立大学）；Institute of High Performance Computing, Agency for Science, Technology and Research（新加坡科技研究局高性能计算研究所）；Singapore University of Technology and Design（新加坡科技设计大学）
Given a matrix $X\in \mathbb{R}_+^{m\times n}$ with nonnegative entries, a Positive Semidefinite (PSD) factorization of $X$ is a collection of $r \times r$-dimensional PSD matrices $\{A_i\}$ and $\{B_j\}$ satisfying $X_{ij}= \mathrm{tr}(A_i B_j)$ for all $\ i\in [m],\ j\in [n]$. PSD factorizations are fundamentally linked to understanding the expressiveness of semidefinite programs as well as the power and limitations of quantum resources in information theory. The PSD factorization task generalizes the Non-negative Matrix Factorization (NMF) problem where we seek a collection of $r$-dimension…
UCLA（加州大学洛杉矶分校）；Colorado State University（科罗拉多州立大学）；UIUC（伊利诺伊大学厄巴纳-香槟分校）；CSU Channel Islands（加州州立大学海峡群岛分校）；Wofford College（沃福德学院）；NYU（纽约大学）；University of Alabama（阿拉巴马大学）；Boston Medical Center（波士顿医疗中心）；Southern Methodist University（南卫理公会大学）；Occidental College（occidental学院）
We propose several new models for semi-supervised nonnegative matrix factorization (SSNMF) and provide motivation for SSNMF models as maximum likelihood estimators given specific distributions of uncertainty. We present multiplicative updates training methods for each new model, and demonstrate the application of these models to classification, although they are flexible to other supervised learning tasks. We illustrate the promise of these models and training methods on both synthetic and real data, and achieve high classification accuracy on the 20 Newsgroups dataset.
National Institute of Informatics（国立信息学研究所）；JST, PRESTO（日本科学技术振兴机构先驱研究项目）；RIKEN Center for Brain Science（理化学研究所脑科学中心）；The University of Tokyo（东京大学）；NIMS（日本物质材料研究机构）；RIKEN AIP（理化学研究所先进智能项目中心）
We present a novel nonnegative tensor decomposition method, called Legendre decomposition, which factorizes an input tensor into a multiplicative combination of parameters. Thanks to the well-developed theory of information geometry, the reconstructed tensor is unique and always minimizes the KL divergence from an input tensor. We empirically show that Legendre decomposition can more accurately reconstruct tensors than other nonnegative tensor decomposition methods.
Northwestern Polytechnical University（西北工业大学）；Center for Optical Imagery Analysis and Learning (OPTIMAL)（光学影像分析与学习中心）
Nonnegative Matrix Factorization (NMF) is a widely-used data analysis technique, and has yielded impressive results in many real-world tasks. Generally, existing NMF methods represent each sample with several centroids, and find the optimal centroids by minimizing the sum of the approximation errors. However, the outliers deviating from the normal data distribution may have large residues, and then dominate the objective value seriously. In this study, an Entropy Minimizing Matrix Factorization framework (EMMF) is developed to tackle the above problem. Considering that the outliers are usually…
Considering a mixed signal composed of various audio sources and recorded with a single microphone, we consider on this paper the blind audio source separation problem which consists in isolating and extracting each of the sources. To perform this task, nonnegative matrix factorization (NMF) based on the Kullback-Leibler and Itakura-Saito $β$-divergences is a standard and state-of-the-art technique that uses the time-frequency representation of the signal. We present a new NMF model better suited for this task. It is based on the minimization of $β$-divergences along with a penalty term that p…
Block Majorization Minimization with Extrapolation and Application to $β$-NMF
Acapela Group（Acapela集团）；Institute of data sciences（数据科学研究所）；Faculty of Engineering（工程学院）；University of Mons（蒙斯大学）；Department of Mathematics and Operational Research（数学与运筹学系）
University of Wisconsin-Madison（威斯康星大学麦迪逊分校）；University of Washington（华盛顿大学）
Nonnegative (linear) least square problems are a fundamental class of problems that is well-studied in statistical learning and for which solvers have been implemented in many of the standard programming languages used within the machine learning community. The existing off-the-shelf solvers view the non-negativity constraint in these problems as an obstacle and, compared to unconstrained least squares, perform additional effort to address it. However, in many of the typical applications, the data itself is nonnegative as well, and we show that the nonnegativity in this case makes the problem …
