Multimodal brain decoding aims to reconstruct semantic information that is consistent with visual stimuli from brain activity signals such as fMRI, and then generate readable natural language descriptions. However, multimodal brain decoding still faces key challenges in cross-subject generalization and interpretability. We propose a BrainROI model and achieve leading-level results in brain-captioning evaluation on the NSD dataset. Under the cross-subject setting, compared with recent state-of-the-art methods and representative baselines, metrics such as BLEU-4 and CIDEr show clear improvements. Firstly, to address the heterogeneity of functional brain topology across subjects, we design a new fMRI encoder. We use multi-atlas soft functional parcellations (soft-ROI) as a shared space. We extend the discrete ROI Concatenation strategy in MINDLLM to a voxel-wise gated fusion mechanism (Voxel-gate). We also ensure consistent ROI mapping through global label alignment, which enhances cross-subject transferability. Secondly, to overcome the limitations of manual and black-box prompting methods in stability and transparency, we introduce an interpretable prompt optimization process. In a small-sample closed loop, we use a locally deployed Qwen model to iteratively generate and select human-readable prompts. This process improves the stability of prompt design and preserves an auditable optimization trajectory. Finally, we impose parameterized decoding constraints during inference to further improve the stability and quality of the generated descriptions.
Universitat Politècnica de Catalunya. BarcelonaTech（加泰罗尼亚理工大学巴塞罗那理工）
In this work we approach the brain tumor segmentation problem with a cascade of two CNNs inspired in the V-Net architecture \cite{VNet}, reformulating residual connections and making use of ROI masks to constrain the networks to train only on relevant voxels. This architecture allows dense training on problems with highly skewed class distributions, such as brain tumor segmentation, by focusing training only on the vecinity of the tumor area. We report results on BraTS2017 Training and Validation sets.
Multi-Atlas Brain Network Classification through Consistency Distillation and Complementary Information Fusion
College of Computing and Data Science, Nanyang Technological University（计算与数据科学学院，南洋理工大学）；Saw Swee Hock School of Public Health at National University of Singapore（新加坡国立大学 Saw Swee Hock 公共卫生学院）；Cognitive Neuroimaging Centre and Lee Kong Chian School of Medicine, Nanyang Technological University（认知神经影像中心和 Lee Kong Chian 医学院，南洋理工大学）
Although many studies have successfully applied transfer learning to medical image segmentation, very few of them have investigated the selection strategy when multiple source tasks are available for transfer. In this paper, we propose a prior knowledge guided and transferability based framework to select the best source tasks among a collection of brain image segmentation tasks, to improve the transfer learning performance on the given target task. The framework consists of modality analysis, RoI (region of interest) analysis, and transferability estimation, such that the source task selectio…
SEED: Towards More Accurate Semantic Evaluation for Visual Brain Decoding
IPAI, Seoul National University（韩亚国立大学IPAI）；ECE, Seoul National University（韩亚国立大学电子工程系）；Psychology, Seoul National University（韩亚国立大学心理学系）；Brookhaven National Lab（布鲁赫斯国家实验室）；ASRI / INMC / AIIS, Seoul National University（韩亚国立大学ASRI/INMC/AIIS）
Reconstructing perceived images from human brain activity monitored by functional magnetic resonance imaging (fMRI) is hard, especially for natural images. Existing methods often result in blurry and unintelligible reconstructions with low fidelity. In this study, we present a novel approach for enhanced image reconstruction, in which existing methods for object decoding and image reconstruction are merged together. This is achieved by conditioning the reconstructed image to its decoded image category using a class-conditional generative adversarial network and neural style transfer. The resul…
This literature review will discuss the use of deep learning methods for image reconstruction using fMRI data. More specifically, the quality of image reconstruction will be determined by the choice in decoding and reconstruction architectures. I will show that these structures can struggle with adaptability to various input stimuli due to complicated objects in images. Also, the significance of feature representation will be evaluated. This paper will conclude the use of deep learning within visual decoding and reconstruction is highly optimal when using variations of deep neural networks and…
Nanjing University of Aeronautics and Astronautics（南京航空航天大学）
Multivariate Pattern (MVP) classification holds enormous potential for decoding visual stimuli in the human brain by employing task-based fMRI data sets. There is a wide range of challenges in the MVP techniques, i.e. decreasing noise and sparsity, defining effective regions of interest (ROIs), visualizing results, and the cost of brain studies. In overcoming these challenges, this paper proposes a novel model of neural representation, which can automatically detect the active regions for each visual stimulus and then utilize these anatomical regions for visualizing and analyzing the functiona…
University of Trento（特伦托大学）；Fondazione Bruno Kessler (FBK)（布鲁诺·凯斯勒基金会（FBK））；Centro Interdipartimentale Mente e Cervello (CIMeC)（跨部门心智与大脑中心（CIMeC））
Brain decoding is a popular multivariate approach for hypothesis testing in neuroimaging. It is well known that the brain maps derived from weights of linear classifiers are hard to interpret because of high correlations between predictors, low signal to noise ratios, and the high dimensionality of neuroimaging data. Therefore, improving the interpretability of brain decoding approaches is of primary interest in many neuroimaging studies. Despite extensive studies of this type, at present, there is no formal definition for interpretability of multivariate brain maps. As a consequence, there is…
Medical Center - University of Freiburg（弗莱堡大学医学中心）；University of Freiburg（弗莱堡大学）
In this manuscript, we investigate deep invertible networks for EEG-based brain signal decoding and find them to generate realistic EEG signals as well as classify novel signals above chance. Further ideas for their regularization towards better decoding accuracies are discussed.
How the brain captures the meaning of linguistic stimuli across multiple views is still a critical open question in neuroscience. Consider three different views of the concept apartment: (1) picture (WP) presented with the target word label, (2) sentence (S) using the target word, and (3) word cloud (WC) containing the target word along with other semantically related words. Unlike previous efforts, which focus only on single view analysis, in this paper, we study the effectiveness of brain decoding in a zero-shot cross-view learning setup. Further, we propose brain decoding in the novel conte…
Inria（法国国家信息与自动化研究所）；CEA（法国原子能与替代能源委员会）；Univ. Paris Saclay（巴黎萨克雷大学）；Univ. Grenoble Alpes（格勒诺布尔阿尔卑斯大学）；CNRS（法国国家科学研究中心）；Grenoble INP（格勒诺布尔国立理工学院）
Cognitive brain imaging is accumulating datasets about the neural substrate of many different mental processes. Yet, most studies are based on few subjects and have low statistical power. Analyzing data across studies could bring more statistical power; yet the current brain-imaging analytic framework cannot be used at scale as it requires casting all cognitive tasks in a unified theoretical framework. We introduce a new methodology to analyze brain responses across tasks without a joint model of the psychological processes. The method boosts statistical power in small studies with specific co…
Spiking Neural Network for Intra-cortical Brain Signal Decoding
School of Artificial Intelligence and Automation, Huazhong University of Science and Technology（华中科技大学人工智能与自动化学院）；Hubei Key Laboratory of Brain-inspired Intelligent Systems, Huazhong University of Science and Technology（华中科技大学湖北省类脑智能系统重点实验室）；College of Life Science and Technology, Huazhong University of Science and Technology（华中科技大学生命科学与技术学院）
Decoding language representations directly from the brain can enable new Brain-Computer Interfaces (BCI) for high bandwidth human-human and human-machine communication. Clinically, such technologies can restore communication in people with neurological conditions affecting their ability to speak. In this study, we propose a novel deep network architecture Brain2Char, for directly decoding text (specifically character sequences) from direct brain recordings (called Electrocorticography, ECoG). Brain2Char framework combines state-of-the-art deep learning modules --- 3D Inception layers for multi…
Middle East Technical University（中东技术大学）；Tohoku University（东北大学）；Koc University（科克大学）
We represent the sequence of fMRI (Functional Magnetic Resonance Imaging) brain volumes recorded during a cognitive stimulus by a graph which consists of a set of local meshes. The corresponding cognitive process, encoded in the brain, is then represented by these meshes each of which is estimated assuming a linear relationship among the voxel time series in a predefined locality. First, we define the concept of locality in two neighborhood systems, namely, the spatial and functional neighborhoods. Then, we construct spatially and functionally local meshes around each voxel, called seed voxel,…
Aristotle University of Thessaloniki（塞萨洛尼基亚里士多德大学）
Among the most impressive recent applications of neural decoding is the visual representation decoding, where the category of an object that a subject either sees or imagines is inferred by observing his/her brain activity. Even though there is an increasing interest in the aforementioned visual representation decoding task, there is no extensive study of the effect of using different machine learning models on the decoding accuracy. In this paper we provide an extensive evaluation of several machine learning models, along with different similarity metrics, for the aforementioned task, drawing…
Brain decoding, understood as the process of mapping brain activities to the stimuli that generated them, has been an active research area in the last years. In the case of language stimuli, recent studies have shown that it is possible to decode fMRI scans into an embedding of the word a subject is reading. However, such word embeddings are designed for natural language processing tasks rather than for brain decoding. Therefore, they limit our ability to recover the precise stimulus. In this work, we propose to directly classify an fMRI scan, mapping it to the corresponding word within a fixe…
School of Artificial Intelligence and Automation, Huazhong University of Science and Technology（华中科技大学人工智能与自动化学院）；School of Electrical and Information Engineering, Zhengzhou University（郑州大学电气工程学院）
Few-shot learning addresses problems for which a limited number of training examples are available. So far, the field has been mostly driven by applications in computer vision. Here, we are interested in adapting recently introduced few-shot methods to solve problems dealing with neuroimaging data, a promising application field. To this end, we create a neuroimaging benchmark dataset for few-shot learning and compare multiple learning paradigms, including meta-learning, as well as various backbone networks. Our experiments show that few-shot methods are able to efficiently decode brain signals…
Balanced Graph Structure Information for Brain Disease Detection
Institute of Innovation, Science, and Sustainability, Federation University Australia（澳大利亚联邦大学创新、科学与可持续发展研究所）；School of Computing Technologies, RMIT University（皇家墨尔本理工大学计算技术学院）
Institute of Automation, Chinese Academy of Sciences（中国科学院自动化研究所）；University of Chinese Academy of Sciences（中国科学院大学）；Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences（中国科学院脑科学与智能技术卓越创新中心）
Decoding emotional states from human brain activity plays an important role in brain-computer interfaces. Existing emotion decoding methods still have two main limitations: one is only decoding a single emotion category from a brain activity pattern and the decoded emotion categories are coarse-grained, which is inconsistent with the complex emotional expression of human; the other is ignoring the discrepancy of emotion expression between the left and right hemispheres of human brain. In this paper, we propose a novel multi-view multi-label hybrid model for fine-grained emotion decoding (up to…
Zhejiang University（浙江大学）；Nanjing University of Posts and Telecommunications（南京邮电大学）
Brain-computer interfaces (BCIs) have enabled prosthetic device control by decoding motor movements from neural activities. Neural signals recorded from cortex exhibit nonstationary property due to abrupt noises and neuroplastic changes in brain activities during motor control. Current state-of-the-art neural signal decoders such as Kalman filter assume fixed relationship between neural activities and motor movements, thus will fail if this assumption is not satisfied. We propose a dynamic ensemble modeling (DyEnsemble) approach that is capable of adapting to changes in neural signals by emplo…
fMRI2GES: Co-speech Gesture Reconstruction from fMRI Signal with Dual Brain Decoding Alignment
College of Information Science and Engineering, Hunan University（湖南大学信息科学与工程学院）；School of Computer Science and Technology, Nanjing University of Science and Technology（南京理工大学计算机科学与技术学院）；Department of Automation, Tsinghua University（清华大学自动化系）
Fast Whole-Brain, Geometry-Aware Functional Alignment for Cross-Subject Decoding
Université Paris-Saclay（巴黎-萨克雷大学）；Inria（法国国家信息与自动化技术研究院）；CEA（法国原子能委员会）；Cognitive Neuroimaging Unit（认知神经成像单位）；Institut National de la Santé et de la Recherche Médicale（法国国家卫生与医学研究院）；Commissariat à l’Energie Atomique et aux énergies alternatives（法国原子能委员会及替代能源委员会）；NeuroSpin center（神经科学中心）；Institut de neuromodulation（神经调制研究所）；Université Paris Cité（巴黎-城市大学）
ETH Zurich（苏黎世联邦理工学院）；University of Michigan（密歇根大学）
Brain-machine interfaces (BMIs) are promising for motor rehabilitation and mobility augmentation. High-accuracy and low-power algorithms are required to achieve implantable BMI systems. In this paper, we propose a novel spiking neural network (SNN) decoder for implantable BMI regression tasks. The SNN is trained with enhanced spatio-temporal backpropagation to fully leverage its ability in handling temporal problems. The proposed SNN decoder achieves the same level of correlation coefficient as the state-of-the-art ANN decoder in offline finger velocity decoding tasks, while it requires only 6…
