Graph link prediction has long been a central problem in graph representation learning in both network analysis and generative modeling. Recent progress in deep learning has introduced increasingly sophisticated architectures for capturing relational dependencies within graph-structured data. In this work, we propose the Generalized Graph Transformer Variational Autoencoder (GGT-VAE). Our model integrates Generalized Graph Transformer Architecture with Variational Autoencoder framework for link prediction. Unlike prior GraphVAE, GCN, or GNN approaches, GGT-VAE leverages transformer style global self-attention mechanism along with laplacian positional encoding to model structural patterns across nodes into a latent space without relying on message passing. Experimental results on several benchmark datasets demonstrate that GGT-VAE consistently achieves above-baseline performance in terms of ROC-AUC and Average Precision. To the best of our knowledge, this is among the first studies to explore graph structure generation using a generalized graph transformer backbone in a variational framework.
Self-supervised disentangled representation learning is a critical task in sequence modeling. The learnt representations contribute to better model interpretability as well as the data generation, and improve the sample efficiency for downstream tasks. We propose a novel sequence representation learning method, named Contrastively Disentangled Sequential Variational Autoencoder (C-DSVAE), to extract and separate the static (time-invariant) and dynamic (time-variant) factors in the latent space. Different from previous sequential variational autoencoder methods, we use a novel evidence lower bo…
University at Buffalo（布法罗大学）；JD Finance America Corporation（京东金融美国公司）
We investigate large-scale latent variable models (LVMs) for neural story generation -- an under-explored application for open-domain long text -- with objectives in two threads: generation effectiveness and controllability. LVMs, especially the variational autoencoder (VAE), have achieved both effective and controllable generation through exploiting flexible distributional latent representations. Recently, Transformers and its variants have achieved remarkable effectiveness without explicit latent representation learning, thus lack satisfying controllability in generation. In this paper, we a…
Insider attacks are one of the most challenging cybersecurity issues for companies, businesses and critical infrastructures. Despite the implemented perimeter defences, the risk of this kind of attack is still very high. In fact, the detection of insider attacks is a very complicated security task and presents a serious challenge to the research community. In this paper, we aim to address this issue by using deep learning algorithms Autoencoder and Variational Autoencoder deep. We will especially investigate the usefulness of applying these algorithms to automatically defend against potential …
Learning network representations is a fundamental task for many graph applications such as link prediction, node classification, graph clustering, and graph visualization. Many real-world networks are interpreted as dynamic networks and evolve over time. Most existing graph embedding algorithms were developed for static graphs mainly and cannot capture the evolution of a large dynamic network. In this paper, we propose Dynamic joint Variational Graph Autoencoders (Dyn-VGAE) that can learn both local structures and temporal evolutionary patterns in a dynamic network. Dyn-VGAE provides a joint l…
Power Flow Feasibility Assessment Using Variational Graph Autoencoders
Agència de Gestió d’Ajuts Universitaris i de Recerca (AGAUR)（加泰罗尼亚大学与研究资助管理局（AGAUR））；Departament de Recerca i Universitats of the Generalitat de Catalunya（加泰罗尼亚自治区研究与大学部）
A probability distribution allows practitioners to uncover hidden structure in the data and build models to solve supervised learning problems using limited data. The focus of this report is on Variational autoencoders, a method to learn the probability distribution of large complex datasets. The report provides a theoretical understanding of variational autoencoders and consolidates the current research in the field. The report is divided into multiple chapters, the first chapter introduces the problem, describes variational autoencoders and identifies key research directions in the field. Ch…
University of Padua（帕多瓦大学）；Fondazione Bruno Kessler（布鲁诺·凯斯勒基金会）
In recent years, deep generative models for graphs have been used to generate new molecules. These models have produced good results, leading to several proposals in the literature. However, these models may have troubles learning some of the complex laws governing the chemical world. In this work, we explore the usage of the histogram of atom valences to drive the generation of molecules in such models. We present Conditional Constrained Graph Variational Autoencoder (CCGVAE), a model that implements this key-idea in a state-of-the-art model, and shows improved results on several evaluation m…
Ostwestfalen-Lippe University of Applied Sciences（东威斯特伐利亚-利珀应用科学大学）；Phoenix Contact Electronics GmbH（菲尼克斯电气电子有限公司）
Digitalization leads to data transparency for production systems that we can benefit from with data-driven analysis methods like neural networks. For example, automated anomaly detection enables saving resources and optimizing the production. We study using rarely occurring information about labeled anomalies into Variational Autoencoder neural network structures to overcome information deficits of supervised and unsupervised approaches. This method outperforms all other models in terms of accuracy, precision, and recall. We evaluate the following methods: Principal Component Analysis, Isolati…
Exemplar-based methods rely on informative data points or prototypes to guide the optimization of learning algorithms. Such data facilitate interpretable model design and prediction. Of particular interest is the utility of exemplars in learning unsupervised deep representations. In this paper, we leverage hubs, which emerge as frequent neighbors in high-dimensional spaces, as exemplars to regularize a variational autoencoder and to learn a discriminative embedding for unsupervised down-stream tasks. We propose an unsupervised, data-driven regularization of the latent space with a mixture of h…
Google（谷歌公司）；Universiteit van Amsterdam（阿姆斯特丹大学）；Qualcomm（高通公司）
Variational autoencoders provide a principled framework for learning deep latent-variable models and corresponding inference models. In this work, we provide an introduction to variational autoencoders and some important extensions.
MPI Tübingen（图宾根马普研究所）；Microsoft Research Cambridge（微软剑桥研究院）；ETH Zürich（苏黎世联邦理工学院）
Variational Autoencoders (VAEs) are expressive latent variable models that can be used to learn complex probability distributions from training data. However, the quality of the resulting model crucially relies on the expressiveness of the inference model. We introduce Adversarial Variational Bayes (AVB), a technique for training Variational Autoencoders with arbitrarily expressive inference models. We achieve this by introducing an auxiliary discriminative network that allows to rephrase the maximum-likelihood-problem as a two-player game, hence establishing a principled connection between VA…
A key advance in learning generative models is the use of amortized inference distributions that are jointly trained with the models. We find that existing training objectives for variational autoencoders can lead to inaccurate amortized inference distributions and, in some cases, improving the objective provably degrades the inference quality. In addition, it has been observed that variational autoencoders tend to ignore the latent variables when combined with a decoding distribution that is too flexible. We again identify the cause in existing training criteria and propose a new class of obj…
This paper aims to develop an acoustic signal-based unsupervised anomaly detection method for automatic machine monitoring. Existing approaches such as deep autoencoder (DAE), variational autoencoder (VAE), conditional variational autoencoder (CVAE) etc. have limited representation capabilities in the latent space and, hence, poor anomaly detection performance. Different models have to be trained for each different kind of machines to accurately perform the anomaly detection task. To solve this issue, we propose a new method named as hierarchical conditional variational autoencoder (HCVAE). Th…
Bielefeld University（比勒费尔德大学）；Australian Centre for Robotic Vision（澳大利亚机器人视觉中心）；Queensland University of Technology（昆士兰科技大学）
This contribution comprises the interplay between a multi-modal variational autoencoder and an environment to a perceived environment, on which an agent can act. Furthermore, we conclude our work with a comparison to curiosity-driven learning.
Shanghai Jiao Tong University（上海交通大学）；University of Technology Sydney（悉尼科技大学）
Learning in the latent variable model is challenging in the presence of the complex data structure or the intractable latent variable. Previous variational autoencoders can be low effective due to the straightforward encoder-decoder structure. In this paper, we propose a variational composite autoencoder to sidestep this issue by amortizing on top of the hierarchical latent variable model. The experimental results confirm the advantages of our model.
University of Toronto（多伦多大学）；Vector Institute（向量研究所）
We decompose the evidence lower bound to show the existence of a term measuring the total correlation between latent variables. We use this to motivate our $β$-TCVAE (Total Correlation Variational Autoencoder), a refinement of the state-of-the-art $β$-VAE objective for learning disentangled representations, requiring no additional hyperparameters during training. We further propose a principled classifier-free measure of disentanglement called the mutual information gap (MIG). We perform extensive quantitative and qualitative experiments, in both restricted and non-restricted settings, and sho…
This paper introduces the Descriptive Variational Autoencoder (DVAE), an unsupervised and end-to-end trainable neural network for predicting vehicle trajectories that provides partial interpretability. The novel approach is based on the architecture and objective of common variational autoencoders. By introducing expert knowledge within the decoder part of the autoencoder, the encoder learns to extract latent parameters that provide a graspable meaning in human terms. Such an interpretable latent space enables the validation by expert defined rule sets. The evaluation of the DVAE is performed …
In this paper, we propose a multimodal transformer using parallel concatenated architecture. Instead of using patches, we use column stripes for images in R, G, B channels as the transformer input. The column stripes keep the spatial relations of original image. We incorporate the multimodal transformer with variational autoencoder for synthetic cross-modal data generation. The multimodal transformer is designed using multiple compression matrices, and it serves as encoders for Parallel Concatenated Variational AutoEncoders (PC-VAE). The PC-VAE consists of multiple encoders, one latent space, …
In this paper, we provide an information-theoretic interpretation of the Vector Quantized-Variational Autoencoder (VQ-VAE). We show that the loss function of the original VQ-VAE can be derived from the variational deterministic information bottleneck (VDIB) principle. On the other hand, the VQ-VAE trained by the Expectation Maximization (EM) algorithm can be viewed as an approximation to the variational information bottleneck(VIB) principle.
RETINA-AI Health, Inc.（RETINA-AI健康公司）；MD Anderson Cancer Center（MD安德森癌症中心）
In Bayesian machine learning, the posterior distribution is typically computationally intractable, hence variational inference is often required. In this approach, an evidence lower bound on the log likelihood of data is maximized during training. Variational Autoencoders (VAE) are one important example where variational inference is utilized. In this tutorial, we derive the variational lower bound loss function of the standard variational autoencoder. We do so in the instance of a gaussian latent prior and gaussian approximate posterior, under which assumptions the Kullback-Leibler term in th…
This work gives an in-depth derivation of the trainable evidence lower bound obtained from the marginal joint log-Likelihood with the goal of training a Multi-Modal Variational Autoencoder (M$^2$VAE).
Variational autoencoder (VAE) is a very popular and well-investigated generative model in neural learning research. To leverage VAE in practical tasks dealing with a massive dataset of large dimensions, it is required to deal with the difficulty of building low variance evidence lower bounds (ELBO). Markov Chain Monte Carlo (MCMC) is an effective approach to tighten the ELBO for approximating the posterior distribution and Hamiltonian Variational Autoencoder (HVAE) is an effective MCMC inspired approach for constructing a low-variance ELBO that is amenable to the reparameterization trick. The …
Université Pierre et Marie Curie（皮埃尔和玛丽·居里大学）；Sony CSL（索尼计算机科学研究所）；École Polytechnique（巴黎综合理工学院）
VAEs (Variational AutoEncoders) have proved to be powerful in the context of density modeling and have been used in a variety of contexts for creative purposes. In many settings, the data we model possesses continuous attributes that we would like to take into account at generation time. We propose in this paper GLSR-VAE, a Geodesic Latent Space Regularization for the Variational AutoEncoder architecture and its generalizations which allows a fine control on the embedding of the data into the latent space. When augmenting the VAE loss with this regularization, changes in the learned latent spa…
The recognition network in deep latent variable models such as variational autoencoders (VAEs) relies on amortized inference for efficient posterior approximation that can scale up to large datasets. However, this technique has also been demonstrated to select suboptimal variational parameters, often resulting in considerable additional error called the amortization gap. To close the amortization gap and improve the training of the generative model, recent works have introduced an additional refinement step that applies stochastic variational inference (SVI) to improve upon the variational par…
The task of predicting stochastic behaviors of road agents in diverse environments is a challenging problem for autonomous driving. To best understand scene contexts and produce diverse possible future states of the road agents adaptively in different environments, a prediction model should be probabilistic, multi-modal, context-driven, and general. We present Conditionalizing Variational AutoEncoders via Hypernetworks (CVAE-H); a conditional VAE that extensively leverages hypernetwork and performs generative tasks for high-dimensional problems like the prediction task. We first evaluate CVAE-…
We describe a novel weakly supervised deep learning framework that combines both the discriminative and generative models to learn meaningful representation in the multiple instance learning (MIL) setting. MIL is a weakly supervised learning problem where labels are associated with groups of instances (referred as bags) instead of individual instances. To address the essential challenge in MIL problems raised from the uncertainty of positive instances label, we use a discriminative model regularized by variational autoencoders (VAEs) to maximize the differences between latent representations o…
University of California, Santa Barbara（加州大学圣巴巴拉分校）；Carnegie Mellon University（卡内基梅隆大学）
We introduce an improved variational autoencoder (VAE) for text modeling with topic information explicitly modeled as a Dirichlet latent variable. By providing the proposed model topic awareness, it is more superior at reconstructing input texts. Furthermore, due to the inherent interactions between the newly introduced Dirichlet variable and the conventional multivariate Gaussian variable, the model is less prone to KL divergence vanishing. We derive the variational lower bound for the new model and conduct experiments on four different data sets. The results show that the proposed model is s…
We present an approach to quantify and compare the privacy-accuracy trade-off for differentially private Variational Autoencoders. Our work complements previous work in two aspects. First, we evaluate the the strong reconstruction MI attack against Variational Autoencoders under differential privacy. Second, we address the data scientist's challenge of setting privacy parameter epsilon, which steers the differential privacy strength and thus also the privacy-accuracy trade-off. In our experimental study we consider image and time series data, and three local and central differential privacy me…
Among likelihood-based approaches for deep generative modelling, variational autoencoders (VAEs) offer scalable amortized posterior inference and fast sampling. However, VAEs are also more and more outperformed by competing models such as normalizing flows (NFs), deep-energy models, or the new denoising diffusion probabilistic models (DDPMs). In this preliminary work, we improve VAEs by demonstrating how DDPMs can be used for modelling the prior distribution of the latent variables. The diffusion prior model improves upon Gaussian priors of classical VAEs and is competitive with NF-based prior…
King Abdullah University of Science and Technology（阿卜杜拉国王科技大学）
Variational autoencoders (VAE) often use Gaussian or category distribution to model the inference process. This puts a limit on variational learning because this simplified assumption does not match the true posterior distribution, which is usually much more sophisticated. To break this limitation and apply arbitrary parametric distribution during inference, this paper derives a \emph{semi-continuous} latent representation, which approximates a continuous density up to a prescribed precision, and is much easier to analyze than its continuous counterpart because it is fundamentally discrete. We…
Seoul National University（首尔大学）；Samsung Electronics Co. Ltd.（三星电子株式会社）
In this paper, we propose Squeezed Convolutional Variational AutoEncoder (SCVAE) for anomaly detection in time series data for Edge Computing in Industrial Internet of Things (IIoT). The proposed model is applied to labeled time series data from UCI datasets for exact performance evaluation, and applied to real world data for indirect model performance comparison. In addition, by comparing the models before and after applying Fire Modules from SqueezeNet, we show that model size and inference times are reduced while similar levels of performance is maintained.
Recently, the standard variational autoencoder has been successfully used to learn a probabilistic prior over speech signals, which is then used to perform speech enhancement. Variational autoencoders have then been conditioned on a label describing a high-level speech attribute (e.g. speech activity) that allows for a more explicit control of speech generation. However, the label is not guaranteed to be disentangled from the other latent variables, which results in limited performance improvements compared to the standard variational autoencoder. In this work, we propose to use an adversarial…
Recently, variational autoencoders have been successfully used to learn a probabilistic prior over speech signals, which is then used to perform speech enhancement. However, variational autoencoders are trained on clean speech only, which results in a limited ability of extracting the speech signal from noisy speech compared to supervised approaches. In this paper, we propose to guide the variational autoencoder with a supervised classifier separately trained on noisy speech. The estimated label is a high-level categorical variable describing the speech signal (e.g. speech activity) allowing f…
Variational autoencoders trained to minimize the reconstruction error are sensitive to the posterior collapse problem, that is the proposal posterior distribution is always equal to the prior. We propose a novel regularization method based on fraternal dropout to prevent posterior collapse. We evaluate our approach using several metrics and observe improvements in all the tested configurations.
This paper presents an infinite variational autoencoder (VAE) whose capacity adapts to suit the input data. This is achieved using a mixture model where the mixing coefficients are modeled by a Dirichlet process, allowing us to integrate over the coefficients when performing inference. Critically, this then allows us to automatically vary the number of autoencoders in the mixture based on the data. Experiments show the flexibility of our method, particularly for semi-supervised learning, where only a small number of training samples are available.
Variational autoencoders learn unsupervised data representations, but these models frequently converge to minima that fail to preserve meaningful semantic information. For example, variational autoencoders with autoregressive decoders often collapse into autodecoders, where they learn to ignore the encoder input. In this work, we demonstrate that adding an auxiliary decoder to regularize the latent space can prevent this collapse, but successful auxiliary decoding tasks are domain dependent. Auxiliary decoders can increase the amount of semantic information encoded in the latent space and visi…
Variational autoencoders employ an amortized inference model to approximate the posterior of latent variables. However, such amortized variational inference faces two challenges: (1) the limited posterior expressiveness of fully-factorized Gaussian assumption and (2) the amortization error of the inference model. We present a novel approach that addresses both challenges. First, we focus on ReLU networks with Gaussian output and illustrate their connection to probabilistic PCA. Building on this observation, we derive an iterative algorithm that finds the mode of the posterior and apply full-co…
Samsung AI Center Moscow（三星莫斯科人工智能中心）；Samsung-HSE Laboratory（三星-高等经济学院实验室）
We propose a single neural probabilistic model based on variational autoencoder that can be conditioned on an arbitrary subset of observed features and then sample the remaining features in "one shot". The features may be both real-valued and categorical. Training of the model is performed by stochastic variational Bayes. The experimental evaluation on synthetic data, as well as feature imputation and image inpainting problems, shows the effectiveness of the proposed approach and diversity of the generated samples.
The paper presents the application of Variational Autoencoders (VAE) for data dimensionality reduction and explorative analysis of mass spectrometry imaging data (MSI). The results confirm that VAEs are capable of detecting the patterns associated with the different tissue sub-types with performance than standard approaches.
Karlsruhe Institute of Technology（卡尔斯鲁厄理工学院）；Nokia（诺基亚）
We evaluate the start-up of blind equalizers at critical working points, analyze the advantages and obstacles of commonly-used algorithms, and demonstrate how the recently-proposed variational autoencoder (VAE) based equalizers can improve bootstrapping.
Generative models of graphs are well-known, but many existing models are limited in scalability and expressivity. We present a novel sequential graphical variational autoencoder operating directly on graphical representations of data. In our model, the encoding and decoding of a graph as is framed as a sequential deconstruction and construction process, respectively, enabling the the learning of a latent space. Experiments on a cycle dataset show promise, but highlight the need for a relaxation of the distribution over node permutations.
The Hong Kong University of Science and Technology（香港科技大学）；The Education University of Hong Kong（香港教育大学）
We investigate a variant of variational autoencoders where there is a superstructure of discrete latent variables on top of the latent features. In general, our superstructure is a tree structure of multiple super latent variables and it is automatically learned from data. When there is only one latent variable in the superstructure, our model reduces to one that assumes the latent features to be generated from a Gaussian mixture model. We call our model the latent tree variational autoencoder (LTVAE). Whereas previous deep learning methods for clustering produce only one partition of data, LT…
University of California Santa Barbara (UCSB)（加州大学圣塔芭芭拉分校）
We develop data-driven methods for incorporating physical information for priors to learn parsimonious representations of nonlinear systems arising from parameterized PDEs and mechanics. Our approach is based on Variational Autoencoders (VAEs) for learning from observations nonlinear state space models. We develop ways to incorporate geometric and topological priors through general manifold latent space representations. We investigate the performance of our methods for learning low dimensional representations for the nonlinear Burgers equation and constrained mechanical systems.
Stanford University（斯坦福大学）；Facebook AI Research（Facebook人工智能研究院）
Variational autoencoders (VAE) are directed generative models that learn factorial latent variables. As noted by Burda et al. (2015), these models exhibit the problem of factor over-pruning where a significant number of stochastic factors fail to learn anything and become inactive. This can limit their modeling power and their ability to learn diverse and meaningful latent representations. In this paper, we evaluate several methods to address this problem and propose a more effective model-based approach called the epitomic variational autoencoder (eVAE). The so-called epitomes of this model a…
The Variational AutoEncoder (VAE) learns simultaneously an inference and a generative model, but only one of these models can be learned at optimum, this behaviour is associated to the ELBO learning objective, that is optimised by a non-informative generator. In order to solve such an issue, we provide a learning objective, learning a maximal informative generator while maintaining bounded the network capacity: the Variational InfoMax (VIM). The contribution of the VIM derivation is twofold: an objective learning both an optimal inference and generative model and the explicit definition of the…
University of Florida（佛罗里达大学）；NEC Laboratories Europe（NEC欧洲实验室）
Although substantial efforts have been made to learn disentangled representations under the variational autoencoder (VAE) framework, the fundamental properties to the dynamics of learning of most VAE models still remain unknown and under-investigated. In this work, we first propose a novel learning objective, termed the principle-of-relevant-information variational autoencoder (PRI-VAE), to learn disentangled representations. We then present an information-theoretic perspective to analyze existing VAE models by inspecting the evolution of some critical information-theoretic quantities across t…
University of Copenhagen（哥本哈根大学）；Aalto University（阿尔托大学）；Technical University of Denmark（丹麦技术大学）
Variational Autoencoders are powerful models for unsupervised learning. However deep models with several layers of dependent stochastic variables are difficult to train which limits the improvements obtained using these highly expressive models. We propose a new inference model, the Ladder Variational Autoencoder, that recursively corrects the generative distribution by a data dependent approximate likelihood in a process resembling the recently proposed Ladder Network. We show that this model provides state of the art predictive log-likelihood and tighter log-likelihood lower bound compared t…
In recent years Variation Autoencoders have become one of the most popular unsupervised learning of complicated distributions.Variational Autoencoder (VAE) provides more efficient reconstructive performance over a traditional autoencoder. Variational auto enocders make better approximaiton than MCMC. The VAE defines a generative process in terms of ancestral sampling through a cascade of hidden stochastic layers. They are a directed graphic models. Variational autoencoder is trained to maximise the variational lower bound. Here we are trying maximise the likelihood and also at the same time we…
In just three years, Variational Autoencoders (VAEs) have emerged as one of the most popular approaches to unsupervised learning of complicated distributions. VAEs are appealing because they are built on top of standard function approximators (neural networks), and can be trained with stochastic gradient descent. VAEs have already shown promise in generating many kinds of complicated data, including handwritten digits, faces, house numbers, CIFAR images, physical models of scenes, segmentation, and predicting the future from static images. This tutorial introduces the intuitions behind VAEs, e…
