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arXiv 2407.01337cs.DMq-bio.MN
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单调布尔函数直接邻居的计算

Computation of Immediate Neighbours of Monotone Boolean Functions

José E. R. Cury, Patrícia Tenera Roxo, Vasco Manquinho, Claudine Chaouiya, Pedro T. Monteiro

AI总结:

本文针对布尔网络模型参数化问题,提出了计算单调非退化布尔函数偏序集中直接邻居的原始规则,为布尔网络合成与修订的高效方法奠定基础。

摘要:

布尔网络是研究基因和信号网络行为的重要数学模型。这些网络定义了分子节点之间的调控影响,每个节点关联一个布尔变量和一个调控(局部)函数,该函数根据其调控因子指定其动态行为。然而,现有数据大多不足以充分参数化模型,即无法为每个节点唯一定义调控函数。为了支持模型参数化,本文给出了与给定调控结构兼容的布尔函数集合(即单调非退化布尔函数的偏序集)上的结果。更精确地说,我们提出了获得该集合中任何函数的直接邻居的原始规则。除了理论意义外,所提出的结果将有助于开发更高效的布尔网络合成和修订方法,受益于对调控函数邻近区域的逐步探索。

英文摘要:

Boolean networks constitute relevant mathematical models to study the behaviours of genetic and signalling networks. These networks define regulatory influences between molecular nodes, each being associated to a Boolean variable and a regulatory (local) function specifying its dynamical behaviour depending on its regulators. However, existing data is mostly insufficient to adequately parametrise a model, that is to uniquely define a regulatory function for each node. With the intend to support model parametrisation, this paper presents results on the set of Boolean functions compatible with a given regulatory structure, i.e. the partially ordered set of monotone non-degenerate Boolean functions. More precisely, we present original rules to obtain the direct neighbours of any function of this set. Besides a theoretical interest, presented results will enable the development of more efficient methods for Boolean network synthesis and revision, benefiting from the progressive exploration of the vicinity of regulatory functions.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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