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arXiv 2402.06960q-bio.QM
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Zepyros:一个用于评估蛋白质-蛋白质界面形状互补性的网络服务器

Zepyros: A webserver to evaluate the shape complementarity of protein-protein interfaces

Mattia Miotto, Lorenzo Di Rienzo, Leonardo Bo', Giancarlo Ruocco, Edoardo Milanetti

AI总结:

本文提出Zepyros网络服务器,利用结构信息快速测量蛋白质-蛋白质复合物界面间的形状互补性,为相互作用预测与设计优化提供公开易用的工具。

摘要:

分子表面在界面处的形状互补性是蛋白质-蛋白质结合区域的一个众所周知的特征,并且它对复合物的稳定性具有关键影响。测量这种互补性是预测可能相互作用以及设计/优化特定相互作用的方法的基础。然而,目前只有有限数量的工具能够高效且快速地评估它。在此,我们介绍 Zepyros,这是一个网络服务器,用于利用结构信息快速测量给定蛋白质-蛋白质复合物中两个分子界面之间的形状互补性。Zepyros 作为一个公开可用的工具实现,具有用户友好的界面。我们的服务器可以在以下链接找到(支持所有主流浏览器):https://zepyros.bio-groups.com

英文摘要:

Shape complementarity of molecular surfaces at the interfaces is a well-known characteristic of protein-protein binding regions, and it is critical in influencing the stability of the complex. Measuring such complementarity is at the basis of methods for both the prediction of possible interactions and for the design/optimization of speficic ones. However, only a limited number of tools are currently available to efficiently and rapidly assess it. Here, we introduce Zepyros, a webserver for fast measuring of the shape complementarity between two molecular interfaces of a given protein-protein complex using structural information. Zepyros is implemented as a publicly available tool with a user-friendly interface. Our server can be found at the following link (all major browser supported): https://zepyros.bio-groups.com

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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