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arXiv 2309.01487cs.CV
GenSelfDiff-HIS：面向组织病理图像分割的基于扩散的生成式自监督方法
GenSelfDiff-HIS: Generative Self-Supervision Using Diffusion for Histopathological Image Segmentation
Indian Institute of Science (IISc)（印度科学学院）；Indian Institute of Technology Delhi (IIT-D)（印度德里理工学院）；All India Institute of Medical Sciences Delhi (AIIMS)（全印度医学科学院新德里）
Vishnuvardhan Purma, Suhas Srinath, Seshan Srirangarajan, Aanchal Kakkar, Prathosh A. P
备注：
Accepted to IEEE Transactions on Medical Imaging, 2024
Histopathological image segmentation is a laborious and time-intensive task, often requiring analysis from experienced pathologists for accurate examinations. To reduce this burden, supervised machine-learning approaches have been adopted using large-scale annotated datasets for histopathological image analysis. However, in several scenarios, the availability of large-scale annotated data is a bottleneck while training such models. Self-supervised learning (SSL) is an alternative paradigm that provides some respite by constructing models utilizing only the unannotated data which is often abundant. The basic idea of SSL is to train a network to perform one or many pseudo or pretext tasks on unannotated data and use it subsequently as the basis for a variety of downstream tasks. It is seen that the success of SSL depends critically on the considered pretext task. While there have been many efforts in designing pretext tasks for classification problems, there haven't been many attempts on SSL for histopathological segmentation. Motivated by this, we propose an SSL approach for segmenting histopathological images via generative diffusion models in this paper. Our method is based on the observation that diffusion models effectively solve an image-to-image translation task akin to a segmentation task. Hence, we propose generative diffusion as the pretext task for histopathological image segmentation. We also propose a multi-loss function-based fine-tuning for the downstream task. We validate our method using several metrics on two publically available datasets along with a newly proposed head and neck (HN) cancer dataset containing hematoxylin and eosin (H\&E) stained images along with annotations. Codes will be made public at https://github.com/suhas-srinath/GenSelfDiff-HIS.
Seoul National University（首尔国立大学）；Korea University（高丽大学）；Yonsei University（延世大学）；KAIST（韩国科学技术院）
Performance of data-driven network for tumor classification varies with stain-style of histopathological images. This article proposes the stain-style transfer (SST) model based on conditional generative adversarial networks (GANs) which is to learn not only the certain color distribution but also the corresponding histopathological pattern. Our model considers feature-preserving loss in addition to well-known GAN loss. Consequently our model does not only transfers initial stain-styles to the desired one but also prevent the degradation of tumor classifier on transferred images. The model is …
Aira Matrix（艾拉矩阵）；Indian Institute of Technology, Bombay（孟买印度理工学院）
Deep learning models that are trained on histopathological images obtained from a single lab and/or scanner give poor inference performance on images obtained from another scanner/lab with a different staining protocol. In recent years, there has been a good amount of research done for image stain normalization to address this issue. In this work, we present a novel approach for the stain normalization problem using fast neural style transfer coupled with adversarial loss. We also propose a novel stain transfer generator network based on High-Resolution Network (HRNet) which requires less trai…
Dynamic Entity-Masked Graph Diffusion Model for histopathological image Representation Learning
Xiamen University（厦门大学）；University of Science and Technology of China（中国科学技术大学）；The University of Hong Kong（香港大学）；Univ Montpellier（蒙彼利埃大学）；IMT Mines Ales（法国国立高等矿业电信学校阿莱斯分校）
University of Ljubljana（卢布尔雅那大学）；XLAB d.o.o.（XLAB公司）
Anomaly detection in visual data refers to the problem of differentiating abnormal appearances from normal cases. Supervised approaches have been successfully applied to different domains, but require an abundance of labeled data. Due to the nature of how anomalies occur and their underlying generating processes, it is hard to characterize and label them. Recent advances in deep generative-based models have sparked interest in applying such methods for unsupervised anomaly detection and have shown promising results in medical and industrial inspection domains. In this work we evaluate a crucia…
This paper presents a new regularization method to train a fully convolutional network for semantic tissue segmentation in histopathological images. This method relies on the benefit of unsupervised learning, in the form of image reconstruction, for network training. To this end, it puts forward an idea of defining a new embedding that allows uniting the main supervised task of semantic segmentation and an auxiliary unsupervised task of image reconstruction into a single one and proposes to learn this united task by a single generative model. This embedding generates an output image by superim…
University of Strasbourg（斯特拉斯堡大学）；University of Belgrade（贝尔格莱德大学）；University of Kragujevac（克拉古耶瓦茨大学）；Hannover Medical School（汉诺威医学院）；University Clinic, Freiburg（弗赖堡大学诊所）
The application of supervised deep learning methods in digital pathology is limited due to their sensitivity to domain shift. Digital Pathology is an area prone to high variability due to many sources, including the common practice of evaluating several consecutive tissue sections stained with different staining protocols. Obtaining labels for each stain is very expensive and time consuming as it requires a high level of domain knowledge. In this article, we propose an unsupervised augmentation approach based on adversarial image-to-image translation, which facilitates the training of stain in…
Medical Research Institute, Tokyo Medical and Dental University（东京医科齿科大学医学研究所）
Abundant accumulation of digital histopathological images has led to the increased demand for their analysis, such as computer-aided diagnosis using machine learning techniques. However, digital pathological images and related tasks have some issues to be considered. In this mini-review, we introduce the application of digital pathological image analysis using machine learning algorithms, address some problems specific to such analysis, and propose possible solutions.
Universidade Estadual de Ponta Grossa（蓬塔格罗萨州立大学）；Pontifícia Universidade Católica do Paraná（巴拉那天主教大学）；Universidade Federal do Paraná（巴拉那联邦大学）
Histopathological images (HIs) are the gold standard for evaluating some types of tumors for cancer diagnosis. The analysis of such images is not only time and resource consuming, but also very challenging even for experienced pathologists, resulting in inter- and intra-observer disagreements. One of the ways of accelerating such an analysis is to use computer-aided diagnosis (CAD) systems. In this paper, we present a review on machine learning methods for histopathological image analysis, including shallow and deep learning methods. We also cover the most common tasks in HI analysis, such as …
Pennsylvania State University（宾夕法尼亚州立大学）；UT MD Anderson Cancer Center（UT MD安德森癌症中心）
In histopathological image analysis, feature extraction for classification is a challenging task due to the diversity of histology features suitable for each problem as well as presence of rich geometrical structure. In this paper, we propose an automatic feature discovery framework for extracting discriminative class-specific features and present a low-complexity method for classification and disease grading in histopathology. Essentially, our Discriminative Feature-oriented Dictionary Learning (DFDL) method learns class-specific features which are suitable for representing samples from the s…
Department of Electrical and Electronics Engineering, Shiraz University of Technology（设拉子理工大学电气与电子工程系）；Department of Pathology, School of Medicine, Shiraz University of Medical Sciences（设拉子医科大学医学院病理学系）
Early detection and prognosis of breast cancer are feasible by utilizing histopathological grading of biopsy specimens. This research is focused on detection and grading of nuclear pleomorphism in histopathological images of breast cancer. The proposed method consists of three internal steps. First, unmixing colors of H&E is used in the preprocessing step. Second, nuclei boundaries are extracted incorporating the center of cancerous nuclei which are detected by applying morphological operations and Difference of Gaussian filter on the preprocessed image. Finally, segmented nuclei are scored to…
Ummon HealthTech（Ummon HealthTech 公司）；Centre de Lutte contre le Cancer（癌症防治中心）
In computer vision, data shift has proven to be a major barrier for safe and robust deep learning applications. In medical applications, histopathological images are often associated with data shift and they are hardly available. It is important to understand to what extent a model can be made robust against data shift using all available data. Here, we first show that domain adversarial methods can be very deleterious if they are wrongly used. We then use domain adversarial methods to transfer data shift invariance from one dataset to another dataset with different semantics and show that dom…
Computer-aided diagnosis (CAD) can help pathologists improve diagnostic accuracy together with consistency and repeatability for cancers. However, the CAD models trained with the histopathological images only from a single center (hospital) generally suffer from the generalization problem due to the straining inconsistencies among different centers. In this work, we propose a pseudo-data based self-supervised federated learning (FL) framework, named SSL-FT-BT, to improve both the diagnostic accuracy and generalization of CAD models. Specifically, the pseudo histopathological images are generat…
The classification of histopathological images is of great value in both cancer diagnosis and pathological studies. However, multiple reasons, such as variations caused by magnification factors and class imbalance, make it a challenging task where conventional methods that learn from image-label datasets perform unsatisfactorily in many cases. We observe that tumours of the same class often share common morphological patterns. To exploit this fact, we propose an approach that learns similarity-based multi-scale embeddings (SMSE) for magnification-independent histopathological image classificat…
Northeastern University（东北大学）；Rensselaer Polytechnic Institute（伦斯勒理工学院）；China Medical University（中国医科大学）；Shenyang Institute of Automation, Chinese Academy of Sciences（中国科学院沈阳自动化研究所）；University of Lübeck（吕贝克大学）
In this paper, a multi-scale visual transformer model, referred as GasHis-Transformer, is proposed for Gastric Histopathological Image Detection (GHID), which enables the automatic global detection of gastric cancer images. GasHis-Transformer model consists of two key modules designed to extract global and local information using a position-encoded transformer model and a convolutional neural network with local convolution, respectively. A publicly available hematoxylin and eosin (H&E) stained gastric histopathological image dataset is used in the experiment. Furthermore, a Dropconnect based l…
School of Artificial Intelligence, Xidian University（西安电子科技大学人工智能学院）；Department of Computer Science, University of North Carolina at Charlotte（北卡罗来纳大学夏洛特分校计算机科学系）
Annotating histopathological images is a time-consuming andlabor-intensive process, which requires broad-certificated pathologistscarefully examining large-scale whole-slide images from cells to tissues.Recent frontiers of transfer learning techniques have been widely investi-gated for image understanding tasks with limited annotations. However,when applied for the analytics of histology images, few of them can effec-tively avoid the performance degradation caused by the domain discrep-ancy between the source training dataset and the target dataset, suchas different tissues, staining appearanc…
In practice, histopathological diagnosis of tumor malignancy often requires a human expert to scan through histopathological images at multiple magnification levels, after which a final diagnosis can be accurately determined. However, previous research on such classification tasks using convolutional neural networks primarily determine a diagnosis for a single magnification level. In this paper, we propose a case-based approach using deep residual neural networks for histopathological malignancy diagnosis, where a case is defined as a sequence of images from the patient at all available levels…
Pennsylvania State University（宾夕法尼亚州立大学）；University of Texas MD Anderson Cancer Center（德克萨斯大学MD安德森癌症中心）
In histopathological image analysis, feature extraction for classification is a challenging task due to the diversity of histology features suitable for each problem as well as presence of rich geometrical structures. In this paper, we propose an automatic feature discovery framework via learning class-specific dictionaries and present a low-complexity method for classification and disease grading in histopathology. Essentially, our Discriminative Feature-oriented Dictionary Learning (DFDL) method learns class-specific dictionaries such that under a sparsity constraint, the learned dictionarie…
DCT-HistoTransformer: Efficient Lightweight Vision Transformer with DCT Integration for histopathological image analysis
Department of Medical Engineering, Electrical Engineering Department, Sharif University of Technology（谢赫·伊斯兰技术大学医学工程系、电气工程系）；Department of Mathematical and Computer Sciences, Kharazmi University（卡拉齐米大学数学与计算机科学系）
ETH Zurich（苏黎世联邦理工学院）；EPFL（洛桑联邦理工学院）；IBM Research（IBM研究院）；IRCCS-Fondazione Pascale（IRCCS-帕斯卡尔基金会）；ICAR-CNR（意大利国家研究理事会ICAR研究所）
Cancer diagnosis, prognosis, and therapeutic response prediction are heavily influenced by the relationship between the histopathological structures and the function of the tissue. Recent approaches acknowledging the structure-function relationship, have linked the structural and spatial patterns of cell organization in tissue via cell-graphs to tumor grades. Though cell organization is imperative, it is insufficient to entirely represent the histopathological structure. We propose a novel hierarchical cell-to-tissue-graph (HACT) representation to improve the structural depiction of the tissue…
Techno India University, West Bengal（西孟加拉邦Techno印度大学）
In this paper we present a novel method for an automated diagnosis of breast carcinoma through multilevel iterative variational mode decomposition (VMD) and textural features encompassing Zernaike moments, fractal dimension and entropy features namely, Kapoor entropy, Renyi entropy, Yager entropy features are extracted from VMD components. The proposed method considers the histopathological image as a set of multidimensional spatially-evolving signals. ReliefF algorithm is used to select the discriminatory features and statistically most significant features are fed to squares support vector m…
Xi’an Jiaotong University（西安交通大学）；the First Affiliated Hospital of Xi’an Jiaotong University（西安交通大学第一附属医院）
Histological subtype of papillary (p) renal cell carcinoma (RCC), type 1 vs. type 2, is an essential prognostic factor. The two subtypes of pRCC have a similar pattern, i.e., the papillary architecture, yet some subtle differences, including cellular and cell-layer level patterns. However, the cellular and cell-layer level patterns almost cannot be captured by existing CNN-based models in large-size histopathological images, which brings obstacles to directly applying these models to such a fine-grained classification task. This paper proposes a novel instance-based Vision Transformer (i-ViT) …
The sheer volume and size of histopathological images (e.g.,10^6 MPixel) underscores the need for faster and more accurate Regions-of-interest (ROI) detection algorithms. In this paper, we propose such an algorithm, which has four main components that help achieve greater accuracy and faster speed: First, while using coarse-to-fine topology preserving segmentation as the baseline, the proposed algorithm uses a superpixel regularity optimization scheme for avoiding irregular and extremely small superpixels. Second, the proposed technique employs a prediction strategy to focus only on important …
Data and Knowledge Co-driving for Cancer Subtype Classification on Multi-Scale Histopathological Slides
Jilin University（吉林大学）；China-Japan Union Hospital of Jilin University（吉林大学中日联谊医院）；Nanjing University of Science and Technology（南京理工大学）；Tongji University（同济大学）
Providing an improved technique which can assist pathologists in correctly classifying meningioma tumours with a significant accuracy is our main objective. The proposed technique, which is based on optimum texture measure combination, inspects the separability of the RGB colour channels and selects the channel which best segments the cell nuclei of the histopathological images. The morphological gradient was applied to extract the region of interest for each subtype and for elimination of possible noise (e.g. cracks) which might occur during biopsy preparation. Meningioma texture features are…
Indian Institute of Information Technology, Sri City（斯里城印度信息技术学院）
Deep learning has shown a great improvement in the performance of visual tasks. Image retrieval is the task of extracting the visually similar images from a database for a query image. The feature matching is performed to rank the images. Various hand-designed features have been derived in past to represent the images. Nowadays, the power of deep learning is being utilized for automatic feature learning from data in the field of biomedical image analysis. Autoencoder and Siamese networks are two deep learning models to learn the latent space (i.e., features or embedding). Autoencoder works bas…
Universitat Pompeu Fabra（庞培法布拉大学）；University of Adelaide（阿德莱德大学）；University Hospital RWTH Aachen（亚琛工业大学医院）；Catalan Institution for Research and Advanced Studies (ICREA)（加泰罗尼亚研究与高级研究院（ICREA））
Tissue typology annotation in Whole Slide histological images is a complex and tedious, yet necessary task for the development of computational pathology models. We propose to address this problem by applying Open Set Recognition techniques to the task of jointly classifying tissue that belongs to a set of annotated classes, e.g. clinically relevant tissue categories, while rejecting in test time Open Set samples, i.e. images that belong to categories not present in the training set. To this end, we introduce a new approach for Open Set histopathological image recognition based on training a m…
This paper addresses the task of nuclei segmentation in high-resolution histopathological images. We propose an auto- matic end-to-end deep neural network algorithm for segmenta- tion of individual nuclei. A nucleus-boundary model is introduced to predict nuclei and their boundaries simultaneously using a fully convolutional neural network. Given a color normalized image, the model directly outputs an estimated nuclei map and a boundary map. A simple, fast and parameter-free post-processing procedure is performed on the estimated nuclei map to produce the final segmented nuclei. An overlapped …
University of Utah（犹他大学）；Scientific Computing and Imaging Institute, University of Utah（犹他大学科学计算与成像研究所）；Huntsman Cancer Institute, University of Utah（犹他大学亨茨曼癌症研究所）
We propose a novel semi-supervised learning approach for classification of histopathology images. We employ strong supervision with patch-level annotations combined with a novel co-training loss to create a semi-supervised learning framework. Co-training relies on multiple conditionally independent and sufficient views of the data. We separate the hematoxylin and eosin channels in pathology images using color deconvolution to create two views of each slide that can partially fulfill these requirements. Two separate CNNs are used to embed the two views into a joint feature space. We use a contr…
CLASS-M: Adaptive stain separation-based contrastive learning with pseudo-labeling for histopathological image classification
University of Utah（犹他大学）；Scientific Computing and Imaging Institute（科学计算与成像研究所）；University of British Columbia（不列颠哥伦比亚大学）；College of Medicine, The Catholic University of Korea（韩国天主教大学医学院）
University of Waterloo（滑铁卢大学）；Amirkabir University of Technology（阿米尔卡比尔理工大学）；Nanjing University of Science & Technology（南京理工大学）
Despite the progress made in the field of medical imaging, it remains a large area of open research, especially due to the variety of imaging modalities and disease-specific characteristics. This paper is a comparative study describing the potential of using local binary patterns (LBP), deep features and the bag-of-visual words (BoVW) scheme for the classification of histopathological images. We introduce a new dataset, \emph{KIMIA Path960}, that contains 960 histopathology images belonging to 20 different classes (different tissue types). We make this dataset publicly available. The small siz…
Computational histopathology has made significant strides in the past few years, slowly getting closer to clinical adoption. One area of benefit would be the automatic generation of diagnostic reports from H\&E-stained whole slide images which would further increase the efficiency of the pathologists' routine diagnostic workflows. In this study, we compiled a dataset (PatchGastricADC22) of histopathological captions of stomach adenocarcinoma endoscopic biopsy specimens, which we extracted from diagnostic reports and paired with patches extracted from the associated whole slide images. The data…
School of Computer Science, Wuhan University（武汉大学计算机学院）；the Third Affiliated Hospital of Zhengzhou University（郑州大学第三附属医院）；Zhengzhou Ultralucia Medical Technology Company Limited（郑州超露西亚医疗科技有限公司）；Cancer Center, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology（华中科技大学同济医学院附属协和医院肿瘤中心）
Uterine cancer, also known as endometrial cancer, can seriously affect the female reproductive organs, and histopathological image analysis is the gold standard for diagnosing endometrial cancer. However, due to the limited capability of modeling the complicated relationships between histopathological images and their interpretations, these computer-aided diagnosis (CADx) approaches based on traditional machine learning algorithms often failed to achieve satisfying results. In this study, we developed a CADx approach using a convolutional neural network (CNN) and attention mechanisms, called H…
Fudan University（复旦大学）；Digital Medical Research Center（数字医学研究中心）；School of Basic Medical Science（基础医学院）；Shanghai Key Lab of Medical Image Computing and Computer Assisted Intervention（上海市医学影像计算与计算机辅助干预重点实验室）
Histopathological images contain abundant phenotypic information and pathological patterns, which are the gold standards for disease diagnosis and essential for the prediction of patient prognosis and treatment outcome. In recent years, computer-automated analysis techniques for histopathological images have been urgently required in clinical practice, and deep learning methods represented by convolutional neural networks have gradually become the mainstream in the field of digital pathology. However, obtaining large numbers of fine-grained annotated data in this field is a very expensive and …
Universitat Politècnica de València（瓦伦西亚理工大学）；University of Stavanger（斯塔万格大学）；Tyris Tech S.L.（泰里斯科技有限公司）
According to GLOBOCAN 2020, prostate cancer is the second most common cancer in men worldwide and the fourth most prevalent cancer overall. For pathologists, grading prostate cancer is challenging, especially when discriminating between Grade 3 (G3) and Grade 4 (G4). This paper proposes a Self-Supervised Learning (SSL) framework to classify prostate histopathological images when labeled images are scarce. In particular, a tailored Convolutional Auto Encoder (CAE) is trained to reconstruct 128x128x3 patches of prostate cancer Whole Slide Images (WSIs) as a pretext task. The downstream task of t…
Lung and Colon cancer are one of the leading causes of mortality and morbidity in adults. Histopathological diagnosis is one of the key components to discern cancer type. The aim of the present research is to propose a computer aided diagnosis system for diagnosing squamous cell carcinomas and adenocarcinomas of lung as well as adenocarcinomas of colon using convolutional neural networks by evaluating the digital pathology images for these cancers. Hereby, rendering artificial intelligence as useful technology in the near future. A total of 2500 digital images were acquired from LC25000 datase…
RIKEN Center for Advanced Intelligence Project（理化学研究所先进智能项目中心）；Nagoya Institute of Technology（名古屋工业大学）；Kurume University School of Medicine（久留米大学医学院）
In the present study, we propose a novel case-based similar image retrieval (SIR) method for hematoxylin and eosin (H&E)-stained histopathological images of malignant lymphoma. When a whole slide image (WSI) is used as an input query, it is desirable to be able to retrieve similar cases by focusing on image patches in pathologically important regions such as tumor cells. To address this problem, we employ attention-based multiple instance learning, which enables us to focus on tumor-specific regions when the similarity between cases is computed. Moreover, we employ contrastive distance metric …
Asymmetric Co-Training with Explainable Cell Graph Ensembling for Histopathological Image Classification
Xi’an Jiaotong University（西安交通大学）；Fujian Medical University（福建医科大学）；University of Electronic Science and Technology of China（电子科技大学）；Hunan Frontline Medical Technology Co., Ltd.（湖南前沿医疗科技有限公司）
George Washington University（乔治华盛顿大学）；University of Waterloo（滑铁卢大学）；University of Toronto（多伦多大学）
This paper constructs a novel intelligent medical diagnosis system, which can realize automatic communication and breast cancer pathological image recognition. This system contains two main parts, including a pre-training chatbot called M-Chatbot and an improved neural network model of EfficientNetV2-S named EfficientNetV2-SA, in which the activation function in top layers is replaced by ACON-C. Using information retrieval mechanism, M-Chatbot instructs patients to send breast pathological image to EfficientNetV2-SA network, and then the classifier trained by transfer learning will return the …
Indian Institute of Information Technology Allahabad（阿拉哈巴德印度信息技术学院）
Computer-aided histopathological image analysis for cancer detection is a major research challenge in the medical domain. Automatic detection and classification of nuclei for cancer diagnosis impose a lot of challenges in developing state of the art algorithms due to the heterogeneity of cell nuclei and data set variability. Recently, a multitude of classification algorithms has used complex deep learning models for their dataset. However, most of these methods are rigid and their architectural arrangement suffers from inflexibility and non-interpretability. In this research article, we have p…
Indian Institute of Information Technology Allahabad（阿拉哈巴德印度信息技术学院）
The use of Deep Learning (DL) based methods in medical histopathology images have been one of the most sought after solutions to classify, segment, and detect diseased biopsy samples. However, given the complex nature of medical datasets due to the presence of intra-class variability and heterogeneity, the use of complex DL models might not give the optimal performance up to the level which is suitable for assisting pathologists. Therefore, ensemble DL methods with the scope of including domain agnostic handcrafted Features (HC-F) inspired this work. We have, through experiments, tried to high…
Arctique: An artificial histopathological dataset unifying realism and controllability for uncertainty quantification
Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association（亥姆霍兹联合会马克斯·德尔布吕克分子医学中心）；Helmholtz Imaging（亥姆霍兹成像中心）；Charité—Universitätsmedizin Berlin（柏林夏里特医学院）；Freie Universität Berlin（柏林自由大学）；Humboldt-Universität zu Berlin（柏林洪堡大学）；University of Potsdam（波茨坦大学）
In this paper, we introduced a novel feature extraction approach, named exclusive autoencoder (XAE), which is a supervised version of autoencoder (AE), able to largely improve the performance of nucleus detection and classification on hematoxylin and eosin (H&E) histopathological images. The proposed XAE can be used in any AE-based algorithm, as long as the data labels are also provided in the feature extraction phase. In the experiments, we evaluated the performance of an approach which is the combination of an XAE and a fully connected neural network (FCN) and compared with some AE-based met…
Histology method is vital in the diagnosis and prognosis of cancers and many other diseases. For the analysis of histopathological images, we need to detect and segment all gland structures. These images are very challenging, and the task of segmentation is even challenging for specialists. Segmentation of glands determines the grade of cancer such as colon, breast, and prostate. Given that deep neural networks have achieved high performance in medical images, we propose a method based on the LinkNet network for gland segmentation. We found the effects of using different loss functions. By usi…
C2RM-Seg: Causal Counterfactual Reasoning with Structural-Semantic Priors for Weakly Supervised Histopathological Tissue Segmentation
Guangxi Key Laboratory of Image and Graphic Intelligent Processing, Guilin University of Electronic Technology（广西图像图形智能处理重点实验室，桂林电子科技大学）；International Joint Research Laboratory of Spatio-temporal Information and Intelligent Location Services, Guilin University of Electronic Technology（时空信息与智能定位服务国际联合研究实验室，桂林电子科技大学）；School of Computer Science and Information Security, Guilin University of Electronic Technology（桂林电子科技大学计算机与信息安全学院）
Institute for High Performance Computing and Networking of National Research Council of Italy (ICAR-CNR)（意大利国家研究委员会高性能计算与网络研究所）；Universita’ Federico II（费德里科二世大学）
Although CNNs are widely considered as the state-of-the-art models in various applications of image analysis, one of the main challenges still open is the training of a CNN on high resolution images. Different strategies have been proposed involving either a rescaling of the image or an individual processing of parts of the image. Such strategies cannot be applied to images, such as gigapixel histopathological images, for which a high reduction in resolution inherently effects a loss of discriminative information, and in respect of which the analysis of single parts of the image suffers from a…
Histopathological characterization of colorectal polyps allows to tailor patients' management and follow up with the ultimate aim of avoiding or promptly detecting an invasive carcinoma. Colorectal polyps characterization relies on the histological analysis of tissue samples to determine the polyps malignancy and dysplasia grade. Deep neural networks achieve outstanding accuracy in medical patterns recognition, however they require large sets of annotated training images. We introduce UniToPatho, an annotated dataset of 9536 hematoxylin and eosin (H&E) stained patches extracted from 292 whole-…
