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arXiv 2307.07528q-bio.QMcs.AIcs.CVcs.HCeess.IV

PatchSorter:一款用于对象标注的高吞吐量深度学习数字病理工具

PatchSorter: A High Throughput Deep Learning Digital Pathology Tool for Object Labeling

Vetsuisse Faculty, University of Bern(伯尔尼大学兽医系);Case Western Reserve University(凯斯西储大学);Toth Technology LLC(托思科技有限责任公司);Duke University(杜克大学);Institute of Pathology, Lausanne University Hospital(洛桑大学医院病理研究所);Bern Center for Precision Medicine, University of Bern(伯尔尼大学伯尔尼精准医学中心);Emory University(埃默里大学);Georgia Institute of Technology(佐治亚理工学院);Atlanta Veterans Medical Center(亚特兰大退伍军人医疗中心);The Netherlands Cancer Institute(荷兰癌症研究所);University Hospital of Geneva(日内瓦大学医院)
Cedric Walker, Tasneem Talawalla, Robert Toth, Akhil Ambekar, Kien Rea, Oswin Chamian, Fan Fan, Sabina Berezowska, Sven Rottenberg, Anant Madabhushi, Marie Mail… 展开作者

Cedric Walker, Tasneem Talawalla, Robert Toth, Akhil Ambekar, Kien Rea, Oswin Chamian, Fan Fan, Sabina Berezowska, Sven Rottenberg, Anant Madabhushi, Marie Maillard, Laura Barisoni, Hugo Mark Horlings, Andrew Janowczyk

AI总结:

本文发布开源数字病理标注工具 PatchSorter,通过结合深度学习与直观 Web 界面,在超过 100,000 个对象上实现较人工无辅助标注逾 7 倍的速度提升且几乎不损失准确性。

摘要:

在数字病理图像中发现与诊断、预后和治疗反应相关的模式,通常需要对大量组织学对象进行难以承担的标注。在此,我们发布一款开源标注工具 PatchSorter,它将深度学习与直观的 Web 界面相集成。利用超过 100,000 个对象,我们证明其每秒标注数相较无辅助标注提升超过 7 倍,同时对标注准确性影响极小,从而能够对大型数据集进行高通量标注。

英文摘要:

The discovery of patterns associated with diagnosis, prognosis, and therapy response in digital pathology images often requires intractable labeling of large quantities of histological objects. Here we release an open-source labeling tool, PatchSorter, which integrates deep learning with an intuitive web interface. Using >100,000 objects, we demonstrate a >7x improvement in labels per second over unaided labeling, with minimal impact on labeling accuracy, thus enabling high-throughput labeling of large datasets.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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