GAUCHE:高斯过程库
GAUCHE: A Library for Gaussian Processes in Chemistry
摘要:
我们介绍GAUCHE,一个库的高斯过程在CHESTRY。高斯过程长期以来一直是概率机器学习的基石,为不确定性量化和贝叶斯优化提供了特别的优势。然而,将高斯过程扩展到化学表示是不平凡的,需要在结构化输入(如图形,字符串和位向量)上定义内核。通过在GAUCHE中定义这样的内核,我们试图为化学中的不确定性量化和贝叶斯优化打开强大工具的大门。受实验化学中经常遇到的场景的启发,我们展示了GAUCHE在分子发现和化学反应优化中的应用。代码库可在https://github.com/leojklarner/gauche上获得
英文摘要:
We introduce GAUCHE, a library for GAUssian processes in CHEmistry. Gaussian processes have long been a cornerstone of probabilistic machine learning, affording particular advantages for uncertainty quantification and Bayesian optimisation. Extending Gaussian processes to chemical representations, however, is nontrivial, necessitating kernels defined over structured inputs such as graphs, strings and bit vectors. By defining such kernels in GAUCHE, we seek to open the door to powerful tools for uncertainty quantification and Bayesian optimisation in chemistry. Motivated by scenarios frequently encountered in experimental chemistry, we showcase applications for GAUCHE in molecular discovery and chemical reaction optimisation. The codebase is made available at https://github.com/leojklarner/gauche
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