Visual SLAM inside the human body will open the way to computer-assisted navigation in endoscopy. However, due to space limitations, medical endoscopes only provide monocular images, leading to systems lacking true scale. In this paper, we exploit the controlled lighting in colonoscopy to achieve the first in-vivo 3D reconstruction of the human colon using photometric stereo on a calibrated monocular endoscope. Our method works in a real medical environment, providing both a suitable in-place calibration procedure and a depth estimation technique adapted to the colon's tubular geometry. We validate our method on simulated colonoscopies, obtaining a mean error of 7% on depth estimation, which is below 3 mm on average. Our qualitative results on the EndoMapper dataset show that the method is able to correctly estimate the colon shape in real human colonoscopies, paving the ground for true-scale monocular SLAM in endoscopy.
Medical endoscopy remains a challenging application for simultaneous localization and mapping (SLAM) due to the sparsity of image features and size constraints that prevent direct depth-sensing. We present a SLAM approach that incorporates depth predictions made by an adversarially-trained convolutional neural network (CNN) applied to monocular endoscopy images. The depth network is trained with synthetic images of a simple colon model, and then fine-tuned with domain-randomized, photorealistic images rendered from computed tomography measurements of human colons. Each image is paired with an …
The Johns Hopkins University（约翰斯·霍普金斯大学）；Johns Hopkins Medical Institutions（约翰斯·霍普金斯医疗机构）
We present a self-supervised approach to training convolutional neural networks for dense depth estimation from monocular endoscopy data without a priori modeling of anatomy or shading. Our method only requires sequential data from monocular endoscopic videos and a multi-view stereo reconstruction method, e.g. structure from motion, that supervises learning in a sparse but accurate manner. Consequently, our method requires neither manual interaction, such as scaling or labeling, nor patient CT in the training and application phases. We demonstrate the performance of our method on sinus endosco…
Johns Hopkins University（约翰斯·霍普金斯大学）；Philips Research（飞利浦研究院）；Johns Hopkins Medical Institutions（约翰斯·霍普金斯医疗机构）；Facebook（脸书）
We present a self-supervised approach to training convolutional neural networks for dense depth estimation from monocular endoscopy data without a priori modeling of anatomy or shading. Our method only requires monocular endoscopic videos and a multi-view stereo method, e.g., structure from motion, to supervise learning in a sparse manner. Consequently, our method requires neither manual labeling nor patient computed tomography (CT) scan in the training and application phases. In a cross-patient experiment using CT scans as groundtruth, the proposed method achieved submillimeter mean residual …
Johns Hopkins University（约翰斯·霍普金斯大学）；Johns Hopkins Medical Institutions（约翰斯·霍普金斯医疗机构）；Galen Robotics, Inc（盖伦机器人公司）
In endoscopy, many applications (e.g., surgical navigation) would benefit from a real-time method that can simultaneously track the endoscope and reconstruct the dense 3D geometry of the observed anatomy from a monocular endoscopic video. To this end, we develop a Simultaneous Localization and Mapping system by combining the learning-based appearance and optimizable geometry priors and factor graph optimization. The appearance and geometry priors are explicitly learned in an end-to-end differentiable training pipeline to master the task of pair-wise image alignment, one of the core components …
In the gastrointestinal (GI) tract endoscopy field, ingestible wireless capsule endoscopy is emerging as a novel, minimally invasive diagnostic technology for inspection of the GI tract and diagnosis of a wide range of diseases and pathologies. Since the development of this technology, medical device companies and many research groups have made substantial progress in converting passive capsule endoscopes to robotic active capsule endoscopes with most of the functionality of current active flexible endoscopes. However, robotic capsule endoscopy still has some challenges. In particular, the use…
Johns Hopkins University（约翰斯·霍普金斯大学）；Johns Hopkins Medical Institutions（约翰斯·霍普金斯医疗机构）
High-quality 3D reconstructions from endoscopy video play an important role in many clinical applications, including surgical navigation where they enable direct video-CT registration. While many methods exist for general multi-view 3D reconstruction, these methods often fail to deliver satisfactory performance on endoscopic video. Part of the reason is that local descriptors that establish pair-wise point correspondences, and thus drive reconstruction, struggle when confronted with the texture-scarce surface of anatomy. Learning-based dense descriptors usually have larger receptive fields ena…
LightNeuS: Neural Surface Reconstruction in Endoscopy using Illumination Decline
Inst. Investigación en Ingeniería de Aragón, I3A, Universidad de Zaragoza（阿拉贡工程研究院，I3A，萨拉戈塔大学）；CVLab, École Polytechnique Fédérale de Lausanne（洛桑联邦理工学院CV实验室）
BDIS-SLAM: A lightweight CPU-based dense stereo SLAM for surgery
United Imaging Research Institute of Intelligent Imaging（联影智能影像研究院）；University of Michigan（密歇根大学）；University of Technology Sydney（悉尼科技大学）；Imperial College London（伦敦帝国理工学院）
Obtaining dense 3D reconstrution with low computational cost is one of the important goals in the field of SLAM. In this paper we propose a dense 3D reconstruction framework from monocular multispectral video sequences using jointly semi-dense SLAM and Multispectral Photometric Stereo approaches. Starting from multispectral video, SALM (a) reconstructs a semi-dense 3D shape that will be densified;(b) recovers relative sparse depth map that is then fed as prioris into optimization-based multispectral photometric stereo for a more accurate dense surface normal recovery;(c)obtains camera pose tha…
We propose a novel geometric and photometric 3D mapping pipeline for accurate and real-time scene reconstruction from monocular images. To achieve this, we leverage recent advances in dense monocular SLAM and real-time hierarchical volumetric neural radiance fields. Our insight is that dense monocular SLAM provides the right information to fit a neural radiance field of the scene in real-time, by providing accurate pose estimates and depth-maps with associated uncertainty. With our proposed uncertainty-based depth loss, we achieve not only good photometric accuracy, but also great geometric ac…
MGSO: Monocular Real-time Photometric SLAM with Efficient 3D Gaussian Splatting
Vision and Image Processing Lab at the Faculty of System Design Engineering, at the University of Waterloo（视觉与图像处理实验室，系统设计工程学院，滑铁卢大学）；Vision and Robotics Lab, Maroun Semaan Faculty of Engineering and Architecture, American University of Beirut（视觉与机器人实验室，马鲁恩·塞马安工程与建筑学院，贝鲁特美国大学）
Most problems involving simultaneous localization and mapping can nowadays be solved using one of two fundamentally different approaches. The traditional approach is given by a least-squares objective, which minimizes many local photometric or geometric residuals over explicitly parametrized structure and camera parameters. Unmodeled effects violating the lambertian surface assumption or geometric invariances of individual residuals are encountered through statistical averaging or the addition of robust kernels and smoothness terms. Aiming at more accurate measurement models and the inclusion …
University of Zurich（苏黎世大学）；Italian Institute of Technology（意大利理工学院）
In this paper, we address the problem of dense 3D reconstruction from multiple view images subject to strong lighting variations. In this regard, a new piecewise framework is proposed to explicitly take into account the change of illumination across several wide-baseline images. Unlike multi-view stereo and multi-view photometric stereo methods, this pipeline deals with wide-baseline images that are uncalibrated, in terms of both camera parameters and lighting conditions. Such a scenario is meant to avoid use of any specific imaging setup and provide a tool for normal users without any experti…
Embedded Systems and Robotics, TCS Innovation Labs（嵌入式系统与机器人技术，塔塔咨询服务公司创新实验室）；Kolkata, India（印度加尔各答）
Most geometric approaches to monocular Visual Odometry (VO) provide robust pose estimates, but sparse or semi-dense depth estimates. Off late, deep methods have shown good performance in generating dense depths and VO from monocular images by optimizing the photometric consistency between images. Despite being intuitive, a naive photometric loss does not ensure proper pixel correspondences between two views, which is the key factor for accurate depth and relative pose estimations. It is a well known fact that simply minimizing such an error is prone to failures. We propose a method using Epipo…
EndoFlow-SLAM: Real-Time Endoscopic SLAM with Flow-Constrained Gaussian Splatting
School of Advanced Technology, Xi'an Jiaotong Liverpool University（西安交通大学利物浦大学先进技术学院）；School of AI and Advanced Computing, Xi'an Jiaotong Liverpool University（西安交通大学利物浦大学人工智能与高级计算学院）；School of Physical Sciences, University of Liverpool（利物浦大学物理科学学院）；The Hong Kong University of Science and Technology (Guangzhou)（香港科技大学（广州））
Kyoto University（京都大学）；OMRON SINIC X Corp.（欧姆龙SINIC X公司）
Images captured in participating media such as murky water, fog, or smoke are degraded by scattered light. Thus, the use of traditional three-dimensional (3D) reconstruction techniques in such environments is difficult. In this paper, we propose a photometric stereo method for participating media. The proposed method differs from previous studies with respect to modeling shape-dependent forward scatter. In the proposed model, forward scatter is described as an analytical form using lookup tables and is represented by spatially-variant kernels. We also propose an approximation of a large-scale …
Technical University of Munich（慕尼黑工业大学）；Artisense；Karlsruhe University of Applied Sciences（卡尔斯鲁厄应用科学大学）
In this paper, we present TANDEM a real-time monocular tracking and dense mapping framework. For pose estimation, TANDEM performs photometric bundle adjustment based on a sliding window of keyframes. To increase the robustness, we propose a novel tracking front-end that performs dense direct image alignment using depth maps rendered from a global model that is built incrementally from dense depth predictions. To predict the dense depth maps, we propose Cascade View-Aggregation MVSNet (CVA-MVSNet) that utilizes the entire active keyframe window by hierarchically constructing 3D cost volumes wit…
Imperial College London（伦敦帝国理工学院）；Dyson Technology Ltd.（戴森科技有限公司）
While the keypoint-based maps created by sparse monocular simultaneous localisation and mapping (SLAM) systems are useful for camera tracking, dense 3D reconstructions may be desired for many robotic tasks. Solutions involving depth cameras are limited in range and to indoor spaces, and dense reconstruction systems based on minimising the photometric error between frames are typically poorly constrained and suffer from scale ambiguity. To address these issues, we propose a 3D reconstruction system that leverages the output of a convolutional neural network (CNN) to produce fully dense depth ma…
Photometric stereo provides an important method for high-fidelity 3D reconstruction based on multiple intensity images captured under different illumination directions. In this paper, we present a complete framework, including a multilight source illumination and acquisition hardware system and a two-stage convolutional neural network (CNN) architecture, to construct inter- and intraframe representations for accurate normal estimation of non-Lambertian objects. We experimentally investigate numerous network design alternatives for identifying the optimal scheme to deploy inter- and intraframe …
Max Planck Institute for Intelligent Systems（马克斯·普朗克智能系统研究所）；ETH Zurich（苏黎世联邦理工学院）；Middle East Technical University（中东技术大学）；Sabanci University（萨班哲大学）；University of Coimbra（科英布拉大学）
Since the development of capsule endoscopcy technology, substantial progress were made in converting passive capsule endoscopes to robotic active capsule endoscopes which can be controlled by the doctor. However, robotic capsule endoscopy still has some challenges. In particular, the use of such devices to generate a precise and globally consistent three-dimensional (3D) map of the entire inner organ remains an unsolved problem. Such global 3D maps of inner organs would help doctors to detect the location and size of diseased areas more accurately, precisely, and intuitively, thus permitting m…
Robotics, TCS Research \& Innovation, Kolkata, India
Autonomous Micro Aerial Vehicles (MAVs) gained tremendous attention in recent years. Autonomous flight in indoor requires a dense depth map for navigable space detection which is the fundamental component for autonomous navigation. In this paper, we address the problem of reconstructing dense depth while a drone is hovering (small camera motion) in indoor scenes using already estimated cameras and sparse point cloud obtained from a vSLAM. We start by segmenting the scene based on sudden depth variation using sparse 3D points and introduce a patch-based local plane fitting via energy minimizati…
Institute of Biomedical Engineering, Bogazici University（波加兹奇大学生物医学工程研究所）；Computer Science Department, University of Oxford（牛津大学计算机科学系）；Brigham and Women’s Hospital, Harvard Medical School（哈佛医学院布莱根妇女医院）；Cancer Data Science, Dana Farber Cancer Institute（丹娜-法伯癌症研究所癌症数据科学部）；Cancer Program, Broad Institute of Harvard and MIT（哈佛-麻省理工学院布罗德研究所癌症项目）；Institute for Systems and Robotics, University of Coimbra（科英布拉大学系统与机器人研究所）；Faculty of Medicine, Clinical Academic Center of Coimbra, University of Coimbra（科英布拉大学科英布拉临床学术中心医学院）；Department of Biomedical Engineering, Johns Hopkins University（约翰霍普金斯大学生物医学工程系）
Deep learning techniques hold promise to develop dense topography reconstruction and pose estimation methods for endoscopic videos. However, currently available datasets do not support effective quantitative benchmarking. In this paper, we introduce a comprehensive endoscopic SLAM dataset consisting of 3D point cloud data for six porcine organs, capsule and standard endoscopy recordings as well as synthetically generated data. A Panda robotic arm, two commercially available capsule endoscopes, two conventional endoscopes with different camera properties, and two high precision 3D scanners were…
ETH Zürich（苏黎世联邦理工学院）；Google Research（谷歌研究院）；KU Leuven（鲁汶大学）
We present a modern solution to the multi-view photometric stereo problem (MVPS). Our work suitably exploits the image formation model in a MVPS experimental setup to recover the dense 3D reconstruction of an object from images. We procure the surface orientation using a photometric stereo (PS) image formation model and blend it with a multi-view neural radiance field representation to recover the object's surface geometry. Contrary to the previous multi-staged framework to MVPS, where the position, iso-depth contours, or orientation measurements are estimated independently and then fused late…
University of Adelaide（阿德莱德大学）；ARC Centre of Excellence for Robotic Vision（澳大利亚研究理事会机器人视觉卓越中心）
Visual SLAM (Simultaneous Localization and Mapping) methods typically rely on handcrafted visual features or raw RGB values for establishing correspondences between images. These features, while suitable for sparse mapping, often lead to ambiguous matches in texture-less regions when performing dense reconstruction due to the aperture problem. In this work, we explore the use of learned features for the matching task in dense monocular reconstruction. We propose a novel convolutional neural network (CNN) architecture along with a deeply supervised feature learning scheme for pixel-wise regress…
Dept. of Electrical Engineering and Computer Science, Technische Universität Berlin（电气工程与计算机科学系，柏林技术大学）；Robotics Institute Germany, Berlin, Germany（德国机器人研究所，柏林，德国）
Retrieving accurate 3D reconstructions of objects from the way they reflect light is a very challenging task in computer vision. Despite more than four decades since the definition of the Photometric Stereo problem, most of the literature has had limited success when global illumination effects such as cast shadows, self-reflections and ambient light come into play, especially for specular surfaces. Recent approaches have leveraged the power of deep learning in conjunction with computer graphics in order to cope with the need of a vast number of training data in order to invert the image irrad…
Alibaba Group（阿里巴巴集团）；Simon Fraser University（西蒙弗雷泽大学）；Hong Kong University of Science and Technology（香港科技大学）
There is an emerging trend of using neural implicit functions for map representation in Simultaneous Localization and Mapping (SLAM). Some pioneer works have achieved encouraging results on RGB-D SLAM. In this paper, we present a dense RGB SLAM method with neural implicit map representation. To reach this challenging goal without depth input, we introduce a hierarchical feature volume to facilitate the implicit map decoder. This design effectively fuses shape cues across different scales to facilitate map reconstruction. Our method simultaneously solves the camera motion and the neural implici…
Tokyo Institute of Technology（东京工业大学）；Nihon University School of Medicine（日本大学医学院）；Tsujinaka Hospital Kashiwanoha（柏叶辻中病院）
Gastroendoscopy has been a clinical standard for diagnosing and treating conditions that affect a part of a patient's digestive system, such as the stomach. Despite the fact that gastroendoscopy has a lot of advantages for patients, there exist some challenges for practitioners, such as the lack of 3D perception, including the depth and the endoscope pose information. Such challenges make navigating the endoscope and localizing any found lesion in a digestive tract difficult. To tackle these problems, deep learning-based approaches have been proposed to provide monocular gastroendoscopy with a…
Omni-LIVO: Robust RGB-Colored Multi-Camera Visual-Inertial-LiDAR Odometry via Photometric Migration and ESIKF Fusion
Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences（中国科学院大学杭州高等研究院）；Advanced Laser Technology Lab of Anhui Province（安徽省先进激光技术实验室）；Key Laboratory of Space Active Opto-Electronics Technology, Shanghai Institute of Technical Physics, Chinese Academy of Sciences（中国科学院上海技术物理研究所空间主动光电技术重点实验室）
Deep approaches to predict monocular depth and ego-motion have grown in recent years due to their ability to produce dense depth from monocular images. The main idea behind them is to optimize the photometric consistency over image sequences by warping one view into another, similar to direct visual odometry methods. One major drawback is that these methods infer depth from a single view, which might not effectively capture the relation between pixels. Moreover, simply minimizing the photometric loss does not ensure proper pixel correspondences, which is a key factor for accurate depth and pos…
We present a method for inferring dense depth maps from images and sparse depth measurements by leveraging synthetic data to learn the association of sparse point clouds with dense natural shapes, and using the image as evidence to validate the predicted depth map. Our learned prior for natural shapes uses only sparse depth as input, not images, so the method is not affected by the covariate shift when attempting to transfer learned models from synthetic data to real ones. This allows us to use abundant synthetic data with ground truth to learn the most difficult component of the reconstructio…
NVIDIA（英伟达）；University of Erlangen-Nuremberg（埃尔朗根-纽伦堡大学）；SenseTime（商汤科技）；Technical University of Munich（慕尼黑工业大学）
Scene reconstruction from unorganized RGB images is an important task in many computer vision applications. Multi-view Stereo (MVS) is a common solution in photogrammetry applications for the dense reconstruction of a static scene. The static scene assumption, however, limits the general applicability of MVS algorithms, as many day-to-day scenes undergo non-rigid motion, e.g., clothes, faces, or human bodies. In this paper, we open up a new challenging direction: dense 3D reconstruction of scenes with non-rigid changes observed from arbitrary, sparse, and wide-baseline views. We formulate the …
Efficient Sparse-to-Dense Visual Localization via Compact Gaussian Scene Representation and Accelerated Dense Pose Estimation
Electronic Information School, Wuhan University（武汉大学电子信息学院）；School of Robotics, Wuhan University（武汉大学机器人学院）；Electronic Information School and the School of Robotics, Wuhan University（武汉大学电子信息学院和机器人学院）
Max Planck Institute for Intelligent Systems（马克斯·普朗克智能系统研究所）；Computer Vision Laboratory, ETH Zurich（苏黎世联邦理工学院计算机视觉实验室）；University of Coimbra（科英布拉大学）
In the gastrointestinal (GI) tract endoscopy field, ingestible wireless capsule endoscopy is considered as a minimally invasive novel diagnostic technology to inspect the entire GI tract and to diagnose various diseases and pathologies. Since the development of this technology, medical device companies and many groups have made significant progress to turn such passive capsule endoscopes into robotic active capsule endoscopes to achieve almost all functions of current active flexible endoscopes. However, the use of robotic capsule endoscopy still has some challenges. One such challenge is the …
Tecnologico de Monterrey（蒙特雷理工学院）；Universidad Panamericana（泛美大学）；Université de Lorraine（洛林大学）；CNRS（法国国家科学研究中心）；Hôpital Ambroise Paré（安布鲁瓦兹·帕雷医院）
Endoscopy is the most widely used medical technique for cancer and polyp detection inside hollow organs. However, images acquired by an endoscope are frequently affected by illumination artefacts due to the enlightenment source orientation. There exist two major issues when the endoscope's light source pose suddenly changes: overexposed and underexposed tissue areas are produced. These two scenarios can result in misdiagnosis due to the lack of information in the affected zones or hamper the performance of various computer vision methods (e.g., SLAM, structure from motion, optical flow) used d…
Self-supervised deep learning-based 3D scene understanding methods can overcome the difficulty of acquiring the densely labeled ground-truth and have made a lot of advances. However, occlusions and moving objects are still some of the major limitations. In this paper, we explore the learnable occlusion aware optical flow guided self-supervised depth and camera pose estimation by an adaptive cross weighted loss to address the above limitations. Firstly, we explore to train the learnable occlusion mask fused optical flow network by an occlusion-aware photometric loss with the temporally suppleme…
In the current monocular depth research, the dominant approach is to employ unsupervised training on large datasets, driven by warped photometric consistency. Such approaches lack robustness and are unable to generalize to challenging domains such as nighttime scenes or adverse weather conditions where assumptions about photometric consistency break down. We propose DeFeat-Net (Depth & Feature network), an approach to simultaneously learn a cross-domain dense feature representation, alongside a robust depth-estimation framework based on warped feature consistency. The resulting feature represe…
MAGS-SLAM: Monocular Multi-Agent Gaussian Splatting SLAM for Geometrically and Photometrically Consistent Reconstruction
ETH Zurich（苏黎世联邦理工学院）；Harbin Engineering University（哈尔滨工程大学）；University of Liverpool（利物浦大学）；University of Macau（澳门大学）；University of Ottawa（多伦多大学）；Wuhan University（武汉大学）；Imperial College London（伦敦帝国学院）
Photometric stereo (PS) is a fundamental technique in computer vision known to produce 3-D shape with high accuracy. The setting of PS is defined by using several input images of a static scene taken from one and the same camera position but under varying illumination. The vast majority of studies in this 3-D reconstruction method assume orthographic projection for the camera model. In addition, they mainly consider the Lambertian reflectance model as the way that light scatters at surfaces. So, providing reliable PS results from real world objects still remains a challenging task. We address …
ETH Zürich（苏黎世联邦理工学院）；Google Research（谷歌研究院）；KU Leuven（鲁汶大学）
This paper presents a simple and effective solution to the longstanding classical multi-view photometric stereo (MVPS) problem. It is well-known that photometric stereo (PS) is excellent at recovering high-frequency surface details, whereas multi-view stereo (MVS) can help remove the low-frequency distortion due to PS and retain the global geometry of the shape. This paper proposes an approach that can effectively utilize such complementary strengths of PS and MVS. Our key idea is to combine them suitably while considering the per-pixel uncertainty of their estimates. To this end, we estimate …
Estimating a scene reconstruction and the camera motion from in-body videos is challenging due to several factors, e.g. the deformation of in-body cavities or the lack of texture. In this paper we present Endo-Depth-and-Motion, a pipeline that estimates the 6-degrees-of-freedom camera pose and dense 3D scene models from monocular endoscopic videos. Our approach leverages recent advances in self-supervised depth networks to generate pseudo-RGBD frames, then tracks the camera pose using photometric residuals and fuses the registered depth maps in a volumetric representation. We present an extens…
The Robotics Institute, Carnegie Mellon University（卡内基梅隆大学机器人研究所）
The problem of obtaining dense reconstruction of an object in a natural sequence of images has been long studied in computer vision. Classically this problem has been solved through the application of bundle adjustment (BA). More recently, excellent results have been attained through the application of photometric bundle adjustment (PBA) methods -- which directly minimize the photometric error across frames. A fundamental drawback to BA & PBA, however, is: (i) their reliance on having to view all points on the object, and (ii) for the object surface to be well textured. To circumvent these lim…
Instituto de Investigación en Ingeniería de Aragón (I3A)（阿拉贡工程研究院（I3A））；Universidad de Zaragoza（萨拉戈萨大学）
Monocular SLAM in deformable scenes will open the way to multiple medical applications like computer-assisted navigation in endoscopy, automatic drug delivery or autonomous robotic surgery. In this paper we propose a novel method to simultaneously track the camera pose and the 3D scene deformation, without any assumption about environment topology or shape. The method uses an illumination-invariant photometric method to track image features and estimates camera motion and deformation combining reprojection error with spatial and temporal regularization of deformations. Our results in simulated…
Direct methods have shown promise on visual odometry and SLAM, leading to greater accuracy and robustness over feature-based methods. However, offline 3-d reconstruction from internet images has not yet benefited from a joint, photometric optimization over dense geometry and camera parameters. Issues such as the lack of brightness constancy, and the sheer volume of data, make this a more challenging task. This work presents a framework for jointly optimizing millions of scene points and hundreds of camera poses and intrinsics, using a photometric cost that is invariant to local lighting change…
