High-dimensional regression and regression with a left-censored response are each well-studied topics. In spite of this, few methods have been proposed which deal with both of these complications simultaneously. The Tobit model -- long the standard method for censored regression in economics -- has not been adapted for high-dimensional regression at all. To fill this gap and bring up-to-date techniques from high-dimensional statistics to the field of high-dimensional left-censored regression, we propose several penalized Tobit models. We develop a fast algorithm which combines quadratic minimization with coordinate descent to compute the penalized Tobit solution path. Theoretically, we analyze the Tobit lasso and Tobit with a folded concave penalty, bounding the $\ell_2$ estimation loss for the former and proving that a local linear approximation estimator for the latter possesses the strong oracle property. Through an extensive simulation study, we find that our penalized Tobit models provide more accurate predictions and parameter estimates than other methods. We use a penalized Tobit model to analyze high-dimensional left-censored HIV viral load data from the AIDS Clinical Trials Group and identify potential drug resistance mutations in the HIV genome. Appendices contain intermediate theoretical results and technical proofs.
Broken adaptive ridge (BAR) is a computationally scalable surrogate to $L_0$-penalized regression, which involves iteratively performing reweighted $L_2$ penalized regressions and enjoys some appealing properties of both $L_0$ and $L_2$ penalized regressions while avoiding some of their limitations. In this paper, we extend the BAR method to the semi-parametric accelerated failure time (AFT) model for right-censored survival data. Specifically, we propose a censored BAR (CBAR) estimator by applying the BAR algorithm to the Leurgan's synthetic data and show that the resulting CBAR estimator is …
A common assumption regarding the standard tobit model is the normality of the error distribution. However, asymmetry and bimodality may be present and alternative tobit models must be used. In this paper, we propose a tobit model based on the class of log-symmetric distributions, which includes as special cases heavy and light tailed distributions and bimodal distributions. We implement a likelihood-based approach for parameter estimation and derive a type of residual. We then discuss the problem of performing testing inference in the proposed class by using the likelihood ratio and gradient …
This paper deals with the Tobit Kalman filtering (TKF) process when the one-dimensional measurements are censored and the noises of the state-space model are coloured. Two improvements of the standard TKF process are proposed. Firstly, the exact moments of the censored measurements are calculated via the moment generating function of the censored measurements. Secondly, coloured noises are considered in the proposed method in order to tackle real-life problems, where the white noises are not common. The designed process is evaluated using two experiments-simulations. The results show that the …
Regression method has been widely used to explore relationship between dependent and independent variables. In practice, data issues such as censoring and missing data often exist. When the response variable is (fixed) censored, Tobit regression models have been widely employed to explore the relationship between the response variable and covariates. In this paper, we extend conventional parametric Tobit models to a novel semi-parametric regression model by replacing the linear components in Tobit models with nonparametric additive components, which we refer as Tobit additive models, and propo…
In many applied fields, such as genomics, different types of data are collected on the same system, and it is not uncommon that some of these datasets are subject to censoring as a result of the measurement technologies used, such as data generated by polymerase chain reactions and flow cytometer. When the overall objective is that of network inference, at possibly different levels of a system, information coming from different sources and/or different steps of the analysis can be integrated into one model with the use of conditional graphical models. In this paper, we develop a doubly penaliz…
Graphical lasso is one of the most used estimators for inferring genetic networks. Despite its diffusion, there are several fields in applied research where the limits of detection of modern measurement technologies make the use of this estimator theoretically unfounded, even when the assumption of a multivariate Gaussian distribution is satisfied. Typical examples are data generated by polymerase chain reactions and flow cytometer. The combination of censoring and high-dimensionality make inference of the underlying genetic networks from these data very challenging. In this paper we propose a…
The subject of tail estimation for randomly censored data from a heavy tailed distribution receives growing attention, motivated by applications for instance in actuarial statistics. The bias of the available estimators of the extreme value index can be substantial and depends strongly on the amount of censoring. We review the available estimators, propose a new bias reduced estimator, and show how shrinkage estimation can help to keep the MSE under control. A bootstrap algorithm is proposed to construct confidence intervals. We compare these new proposals with the existing estimators through …
The classic censored regression model (tobit model) has been widely used in the economic literature. This model assumes normality for the error distribution and is not recommended for cases where positive skewness is present. Moreover, in regression analysis, it is well-known that a quantile regression approach allows us to study the influences of the explanatory variables on the dependent variable considering different quantiles. Therefore, we propose in this paper a quantile tobit regression model based on quantile-based log-symmetric distributions. The proposed methodology allows us to mode…
Non-parametric maximum likelihood estimation encompasses a group of classic methods to estimate distribution-associated functions from potentially censored and truncated data, with extensive applications in survival analysis. These methods, including the Kaplan-Meier estimator and Turnbull's method, often result in overfitting, especially when the sample size is small. We propose an improvement to these methods by applying kernel smoothing to their raw estimates, based on a BIC-type loss function that balances the trade-off between optimizing model fit and controlling model complexity. In the …
The statistical regression technique is an extraordinarily essential data fitting tool to explore the potential possible generation mechanism of the random phenomenon. Therefore, the model selection or the variable selection is becoming extremely important so as to identify the most appropriate model with the most optimal explanation effect on the interesting response. In this paper, we discuss and compare the bootstrap-based model selection criteria on the standard censored regression model (Tobit regression model) under the circumstance of limited observation information. The Monte Carlo num…
We consider efficient estimation of flexible transformation models with interval-censored data. To reduce the dimension of semi-parametric models, the unknown monotone transformation function is approximated via monotone splines. A penalization technique is used to provide more computationally efficient estimation of all parameters. To accomplish model fitting, a computationally efficient nested iterative expectation-maximization (EM) based algorithm is developed for estimation, and an easily implemented variance-covariance approach is proposed for inference on regression parameters. Theoretic…
Censored broken adaptive ridge rank regression via induced smoothing
School of Mathematics, Statistics and Data Science, Sungshin Women’s University（成均馆大学数学、统计与数据科学学院）；Sungshin Women’s University（诚信女子大学）；Department of Biostatistics, Virginia Commonwealth University（弗吉尼亚联邦大学生物统计系）；Virginia Commonwealth University（弗吉尼亚联邦大学）；Center for Data Science, Sungshin Women’s University（诚信女子大学数据科学中心）
In this paper, we study the problem of signal estimation from noisy non-linear measurements when the unknown $n$-dimensional signal is in the range of an $L$-Lipschitz continuous generative model with bounded $k$-dimensional inputs. We make the assumption of sub-Gaussian measurements, which is satisfied by a wide range of measurement models, such as linear, logistic, 1-bit, and other quantized models. In addition, we consider the impact of adversarial corruptions on these measurements. Our analysis is based on a generalized Lasso approach (Plan and Vershynin, 2016). We first provide a non-unif…
High throughput genetic sequencing arrays with thousands of measurements per sample and a great amount of related censored clinical data have increased demanding need for better measurement specific model selection. In this paper we establish strong oracle properties of nonconcave penalized methods for nonpolynomial (NP) dimensional data with censoring in the framework of Cox's proportional hazards model. A class of folded-concave penalties are employed and both LASSO and SCAD are discussed specifically. We unveil the question under which dimensionality and correlation restrictions can an orac…
We consider the finite sample properties of the regularized high-dimensional Cox regression via lasso. Existing literature focuses on linear models or generalized linear models with Lipschitz loss functions, where the empirical risk functions are the summations of independent and identically distributed (iid) losses. The summands in the negative log partial likelihood function for censored survival data, however, are neither iid nor Lipschitz. We first approximate the negative log partial likelihood function by a sum of iid non-Lipschitz terms, then derive the non-asymptotic oracle inequalitie…
This paper considers the problem of semi-parametric proportional hazards model fitting for interval, left and right censored survival times. We adopt a more versatile penalized likelihood method to estimate the baseline hazard and the regression coefficients simultaneously, where the penalty is introduced in order to regularize the baseline hazard estimate. We present asymptotic properties of our estimate, allowing for the possibility that it may lie on the boundary of the parameter space. We also provide a computational method based on marginal likelihood, which allows the regularization para…
High-dimensional sparse modeling with censored survival data is of great practical importance, as exemplified by modern applications in high-throughput genomic data analysis and credit risk analysis. In this article, we propose a class of regularization methods for simultaneous variable selection and estimation in the additive hazards model, by combining the nonconcave penalized likelihood approach and the pseudoscore method. In a high-dimensional setting where the dimensionality can grow fast, polynomially or nonpolynomially, with the sample size, we establish the weak oracle property and ora…
In data sets with many more features than observations, independent screening based on all univariate regression models leads to a computationally convenient variable selection method. Recent efforts have shown that in the case of generalized linear models, independent screening may suffice to capture all relevant features with high probability, even in ultra-high dimension. It is unclear whether this formal sure screening property is attainable when the response is a right-censored survival time. We propose a computationally very efficient independent screening method for survival data which …
We consider quantile regression processes from censored data under dependent data structures and derive a uniform Bahadur representation for those processes. We also consider cases where the dimension of the parameter in the quantile regression model is large. It is demonstrated that traditional penalized estimators such as the adaptive lasso yield sub-optimal rates if the coefficients of the quantile regression cross zero. New penalization techniques are introduced which are able to deal with specific problems of censored data and yield estimates with an optimal rate. In contrast to most of t…
We study the absolute penalized maximum partial likelihood estimator in sparse, high-dimensional Cox proportional hazards regression models where the number of time-dependent covariates can be larger than the sample size. We establish oracle inequalities based on natural extensions of the compatibility and cone invertibility factors of the Hessian matrix at the true regression coefficients. Similar results based on an extension of the restricted eigenvalue can be also proved by our method. However, the presented oracle inequalities are sharper since the compatibility and cone invertibility fac…
Current status data are commonly encountered in medical and epidemiological studies in which the failure time for study units is the outcome variable of interest. Data of this form are characterized by the fact that the failure time is not directly observed but rather is known relative to an observation time; i.e., the failure times are either left- or right-censored. Due to its structure, the analysis of such data can be challenging. To circumvent these challenges and to provide for a flexible modeling construct which can be used to analyze current status data, herein, a partially linear addi…
Semiparametric accelerated failure time (AFT) models are a useful alternative to Cox proportional hazards models, especially when the assumption of constant hazard ratios is untenable. However, rank-based criteria for fitting AFT models are often non-differentiable, which poses a computational challenge in high-dimensional settings. In this article, we propose a new alternating direction method of multipliers algorithm for fitting semiparametric AFT models by minimizing a penalized rank-based loss function. Our algorithm scales well in both the number of subjects and number of predictors; and …
