A partial order is universal if it contains every countable partial order as a suborder. In 2017, Fiala, Hubička, Long and Nešetřil showed that every interval in the homomorphism order of graphs is universal, with the only exception being the trivial gap $[K_1,K_2]$. We consider the homomorphism order restricted to the class of oriented paths and trees. We show that every interval between two oriented paths or oriented trees of height at least 4 is universal. The exceptional intervals coincide for oriented paths and trees and are contained in the class of oriented paths of height at most 3, which forms a chain.
Several possible definitions of local injectivity for a homomorphism of an oriented graph $G$ to an oriented graph $H$ are considered. In each case, we determine the complexity of deciding whether there exists such a homomorphism when $G$ is given and $H$ is a fixed tournament on three or fewer vertices. Each possible definition leads to a locally-injective oriented colouring problem. A dichotomy theorem is proved in each case.
In the homomorphism order of digraphs, a duality pair is an ordered pair of digraphs $(G,H)$ such that for any digraph, $D$, $G\to D$ if and only if $D\not\to H$. The directed path on $k+1$ vertices together with the transitive tournament on $k$ vertices is a classic example of a duality pair. This relation between paths and tournaments implies that a graph is $k$-colourable if and only if it admits an orientation with no directed path on more than $k$-vertices. In this work, for every undirected cycle $C$ we find an orientation $C_D$ and an oriented path $P_C$, such that $(P_C,C_D)$ is a dual…
We prove that graphs G, G' satisfy the same sentences of first-order logic with counting of quantifier rank at most k if and only if they are homomorphism-indistinguishable over the class of all graphs of tree depth at most k. Here G, G' are homomorphism-indistinguishable over a class C of graphs if for each graph F in C, the number of homomorphisms from F to G equals the number of homomorphisms from F to G'.
We introduce the tree distance, a new distance measure on graphs. The tree distance can be computed in polynomial time with standard methods from convex optimization. It is based on the notion of fractional isomorphism, a characterization based on a natural system of linear equations whose integer solutions correspond to graph isomorphism. By results of Tinhofer (1986, 1991) and Dvořák (2010), two graphs G and H are fractionally isomorphic if and only if, for every tree T, the number of homomorphisms from T to G equals the corresponding number from T to H, which means that the tree distance of…
Each of several possible definitions of local injectivity for a homomorphism of an oriented graph $G$ to an oriented graph $H$ leads to an injective oriented colouring problem. For each case in which such a problem is solvable in polynomial time, we identify a set $\mathcal{F}$ of oriented graphs such that an oriented graph $G$ has an injective oriented colouring with the given number of colours if and only if there is no $F \in \mathcal{F}$ for which there is a locally-injective homomorphism of $F$ to $G$.
In Chapter 1 we fully characterise pairs of finite graphs which form a gap in the full homomorphism order. This leads to a simple proof of the existence of generalised duality pairs. We also discuss how such results can be carried to relational structures with unary and binary relations. In Chapter 2 we show a very simple and versatile argument based on divisibility which immediately yields the universality of the homomorphism order of directed graphs and discuss three applications. In chapter 3, we show that every interval in the homomorphism order of finite undirected graphs is either univer…
Recent results show that the structural similarity of graphs can be characterized by counting homomorphisms to them: the Tree Theorem states that the well-known color-refinement algorithm does not distinguish two graphs G and H if and only if, for every tree T, the number of homomorphisms Hom(T,G) from T to G is equal to the corresponding number Hom(T,H) from T to H (Dell, Grohe, Rattan 2018). We show how this approach transfers to hypergraphs by introducing a generalization of color refinement. We prove that it does not distinguish two hypergraphs G and H if and only if, for every connected B…
Oriented chromatic number of an oriented graph $G$ is the minimum order of an oriented graph $H$ such that $G$ admits a homomorphism to $H$. The oriented chromatic number of an unoriented graph $G$ is the maximal chromatic number over all possible orientations of $G$. In this paper, we prove that every Halin graph has oriented chromatic number at most 8, improving a previous bound by Hosseini Dolama and Sopena, and confirming the conjecture given by Vignal.
We show the density theorem for the class of finite oriented trees ordered by the homomorphism order. We also show that every interval of oriented trees, in addition to be dense, is in fact universal. We end by considering the fractal property in the class of all finite digraphs.
In this paper we study several problems concerning the number of homomorphisms of trees. We give an algorithm for the number of homomorphisms from a tree to any graph by the Transfer-matrix method. By using this algorithm and some transformations on trees, we study various extremal problems about the number of homomorphisms of trees. These applications include a far reaching generalization of Bollobás and Tyomkyn's result concerning the number of walks in trees. Some other highlights of the paper are the following. Denote by $\hom(H,G)$ the number of homomorphisms from a graph $H$ to a graph $…
The clique number of an undirected graph $G$ is the maximum order of a complete subgraph of $G$ and is a well-known lower bound for the chromatic number of $G$. Every proper $k$-coloring of $G$ may be viewed as a homomorphism (an edge-preserving vertex mapping) of $G$ to the complete graph of order $k$. By considering homomorphisms of oriented graphs (digraphs without cycles of length at most 2), we get a natural notion of (oriented) colorings and oriented chromatic number of oriented graphs. An oriented clique is then an oriented graph whose number of vertices and oriented chromatic number co…
Recent work on perturbative quantum field theory has led to much study of the Connes-Kreimer Hopf algebra. Its (graded) dual, the Grossman-Larson Hopf algebra of rooted trees, had already been studied by algebraists. L. Foissy introduced a noncommutative version of the Connes-Kreimer Hopf algebra, which turns out to be self-dual. Using some homomorphisms defined by the author and W. Zhao, we describe a commutative diagram that relates the aforementioned Hopf algebras to each other and to the Hopf algebras of symmetric functions, noncommutative symmetric functions, and quasi-symmetric functions…
A digraph is {\it $n$-unavoidable} if it is contained in every tournament of order $n$. We first prove that every arborescence of order $n$ with $k$ leaves is $(n+k-1)$-unavoidable. We then prove that every oriented tree of order $n$ ($n\geq 2$) with $k$ leaves is $(\frac{3}{2}n+\frac{3}{2}k -2)$-unavoidable and $(\frac{9}{2}n -\frac{5}{2}k -\frac{9}{2})$-unavoidable, and thus $(\frac{21}{8} n- \frac{47}{16})$-unavoidable. Finally, we prove that every oriented tree of order $n$ with $k$ leaves is $(n+ 144k^2 - 280k + 124)$-unavoidable.
RIKEN Center for Advanced Intelligence Project（日本理化学研究所先进智能项目）；Tokyo Institute of Technology（东京工业大学）
In this paper, we study the graph classification problem from the graph homomorphism perspective. We consider the homomorphisms from $F$ to $G$, where $G$ is a graph of interest (e.g. molecules or social networks) and $F$ belongs to some family of graphs (e.g. paths or non-isomorphic trees). We show that graph homomorphism numbers provide a natural invariant (isomorphism invariant and $\mathcal{F}$-invariant) embedding maps which can be used for graph classification. Viewing the expressive power of a graph classifier by the $\mathcal{F}$-indistinguishable concept, we prove the universality pro…
The Surjective Homomorphism problem is to test whether a given graph G called the guest graph allows a vertex-surjective homomorphism to some other given graph H called the host graph. The bijective and injective homomorphism problems can be formulated in terms of spanning subgraphs and subgraphs, and as such their computational complexity has been extensively studied. What about the surjective variant? Because this problem is NP-complete in general, we restrict the guest and the host graph to belong to graph classes G and H, respectively. We determine to what extent a certain choice of G and …
Let $\CRF_S$ denote the category of $S$-colored rooted forests, and $\H_{\CRF_S}$ denote its Ringel-Hall algebra as introduced in \cite{KS}. We construct a homomorphism from a $K^+_0 (\CRF_S)$--graded version of the Hopf algebra of noncommutative symmetric functions to $\H_{\CRF_S}$. Dualizing, we obtain a homomorphism from the Connes-Kreimer Hopf algebra to a $K^+_0 (\CRF_S)$--graded version of the algebra of quasisymmetric functions. This homomorphism is a refinement of one considered by W. Zhao in \cite{Z}.
Phylogenetic trees are binary nonplanar trees with labelled leaves, and plane oriented recursive trees are planar trees with an increasing labelling. Both families are enumerated by double factorials. A bijection is constructed, using the respective representations a 2-partitions and trapezoidal words.
We consider constrained variants of graph homomorphisms such as embeddings, monomorphisms, full homomorphisms, surjective homomorpshims, and locally constrained homomorphisms. We also introduce a new variation on this theme which derives from relations between graphs and is related to multihomomorphisms. This gives a generalization of surjective homomorphisms and naturally leads to notions of R-retractions, R-cores, and R-cocores of graphs. Both R-cores and R-cocores of graphs are unique up to isomorphism and can be computed in polynomial time. The theory of the graph homomorphism order is wel…
For a fixed digraph $\mathbb H$, the $\mathbb H$-coloring problem is the problem of deciding whether a given input digraph $\mathbb G$ admits a homomorphism to $\mathbb H$. The CSP dichotomy conjecture of Feder and Vardi is equivalent to proving that, for any $\mathbb H$, the $\mathbb H$-coloring problem is in in P or NP-complete. We confirm this dichotomy for a certain class of oriented trees, which we call special trees (generalizing earlier results on special triads and polyads). Moreover, we prove that every tractable special oriented tree has bounded width, i.e., the corresponding $\mathb…
We study the problem HomsTo$H$ of counting, modulo 2, the homomorphisms from an input graph to a fixed undirected graph $H$. A characteristic feature of modular counting is that cancellations make wider classes of instances tractable than is the case for exact (non-modular) counting, so subtle dichotomy theorems can arise. We show the following dichotomy: for any $H$ that contains no 4-cycles, HomsTo$H$ is either in polynomial time or is $\oplus P$-complete. This confirms a conjecture of Faben and Jerrum that was previously only known to hold for trees and for a restricted class of treewidth-2…
Restrictions of incidence-preserving path maps produce an oriented hypergraphic All Minors Matrix-tree Theorems for Laplacian and adjacency matrices. The images of these maps produce a locally signed graphic, incidence generalization, of cycle covers and basic figures that correspond to incidence-k-forests. When restricted to bidirected graphs the natural partial ordering of maps results in disjoint signed boolean lattices whose minor calculations correspond to principal order ideals. As an application, (1) the determinant formula of a signed graphic Laplacian is reclaimed and shown to be dete…
Mader [J. Graph Theory 65 (2010) 61-69] conjectured that for every positive integer $k$ and every finite tree $T$ with order $m$, every $k$-connected, finite graph $G$ with $δ(G)\geq \lfloor\frac{3}{2}k\rfloor+m-1$ contains a subtree $T'$ isomorphic to $T$ such that $G-V(T')$ is $k$-connected. The conjecture has been verified for paths, trees when $k=1$, and stars or double-stars when $k=2$. In this paper we verify the conjecture for two classes of trees when $k=2$. For digraphs, Mader [J. Graph Theory 69 (2012) 324-329] conjectured that every $k$-connected digraph $D$ with minimum semi-degree…
An oriented tree $T$ on $n$ vertices is unavoidable if every tournament on $n$ vertices contains a copy of $T$. In this paper we give a sufficient condition for $T$ to be unavoidable, and use this to prove that almost all labelled oriented trees are unavoidable, verifying a conjecture of Bender and Wormald. We additionally prove that every tournament on $n + o(n)$ vertices contains a copy of every oriented tree $T$ on $n$ vertices with polylogarithmic maximum degree, improving a result of Kühn, Mycroft and Osthus.
We relate the existence problem of universal objects to the properties of corresponding enriched categories (lifts or expansions). In particular, extending earlier results, we prove that for every (possibly infinite) regular set F of finite connected structures there exists a (countable) ω-categorical universal structure U for the class Forb(F) (of all countable structures not containing any homomorphic image of a member of F). We employ a technique known as homogenization: The universal object U is the shadow (reduct) of an ultrahomogeneous structure U'. We also put the results of this paper …
Since Darwin, species trees have been used as a simplified description of the relationships which summarize the complicated network $N$ of reality. Recent evidence of hybridization and lateral gene transfer, however, suggest that there are situations where trees are inadequate. Consequently it is important to determine properties that characterize networks closely related to $N$ and possibly more complicated than trees but lacking the full complexity of $N$. A connected surjective digraph map (CSD) is a map $f$ from one network $N$ to another network $M$ such that every arc is either collapsed…
In this paper, we study the lattice properties of posets of torsion pairs in the module category of a family of representation-finite gentle algebras called tiling algebras, introduced by Coelho Simoes and Parsons. We present a combinatorial model for torsion pairs using polyogonal subdivisions of a convex polygon. We use this model and the lattice theory to classify 2-term simple-minded collections in the bounded derived category of the corresponding tiling algebra. As a consequence, we obtain a characterization of c-matrices for any quiver mutation-equivalent to a type A Dynkin quiver. Our m…
Oriented ribbon graphs (dessins d'enfant) are graphs embedded in oriented surfaces. The Bollobás-Riordan-Tutte polynomial is a three-variable polynomial that extends the Tutte polynomial to oriented ribbon graphs. A quasi-tree of a ribbon graph is a spanning subgraph with one face, which is described by an ordered chord diagram. We generalize the spanning tree expansion of the Tutte polynomial to a quasi-tree expansion of the Bollobás-Riordan-Tutte polynomial.
A labeled oriented graph (LOG) is an oriented graph with a labeling function from the edge set into the vertex set. The complexity of a LOG is the minimal cardinality of an initial set $S$ of vertices such that every vertex can be reached successively from $S$ only using edges with labels in $S$ or already visited vertices. We give a constructive proof of a conjecture by Rosebrock stating that for an interior reduced, connected LOG with $m$ vertices the complexity is at most $(m+1) / 2$ and show that this bound is sharp. Due to results of Howie labeled oriented trees (LOTs) yield crucial candi…
