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arXiv 2201.02517cs.CL
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开发具有多答案和多焦点问题的抽取式临床问答数据集

Development of an Extractive Clinical Question Answering Dataset with Multi-Answer and Multi-Focus Questions

Mayo Clinic(梅奥诊所)

Sungrim Moon, Huan He, Hongfang Liu, Jungwei W. Fan

AI总结:

本研究利用n2c2语料库开发了RxWhyQA数据集,包含96,939个问答条目,专门用于评估和训练能处理多答案和多焦点问题的临床抽取式问答系统,并发现多答案EQA仍具挑战性。

摘要:

背景:抽取式问答(EQA)是一种有用的自然语言处理(NLP)应用,通过在临床笔记中定位答案来回答患者特定问题。现实的临床EQA可能对单个问题有多个答案,且一个问题中可能有多个焦点,这在用于开发人工智能解决方案的现有数据集中是缺乏的。目标:创建一个数据集,用于开发和评估能够处理自然多答案和多焦点问题的临床EQA系统。方法:我们利用2018年国家NLP临床挑战赛(n2c2)语料库中的标注关系来生成EQA数据集。具体而言,1对N、M对1和M对N的药物-原因关系被纳入,以形成多答案和多焦点问答条目,这代表了除基本的一药一原因案例之外更复杂和自然的挑战。我们开发了一个基线解决方案并在该数据集上进行了测试。结果:生成的RxWhyQA数据集包含96,939个问答条目。在可回答的问题中,25%需要多个答案,2%在一个问题中询问多种药物。文本中答案周围观察到频繁的线索,90%的药物和原因术语出现在同一或相邻句子中。基线EQA解决方案在整个数据集上实现了0.72的最佳F1值,在特定子集上分别为:不可回答问题0.93,单药问题0.48对比多药问题0.60,单答案问题0.54对比多答案问题0.43。讨论:RxWhyQA数据集可用于训练和评估需要处理多答案和多焦点问题的系统。具体而言,多答案EQA似乎具有挑战性,因此值得在研究中投入更多。

英文摘要:

Background: Extractive question-answering (EQA) is a useful natural language processing (NLP) application for answering patient-specific questions by locating answers in their clinical notes. Realistic clinical EQA can have multiple answers to a single question and multiple focus points in one question, which are lacking in the existing datasets for development of artificial intelligence solutions. Objective: Create a dataset for developing and evaluating clinical EQA systems that can handle natural multi-answer and multi-focus questions. Methods: We leveraged the annotated relations from the 2018 National NLP Clinical Challenges (n2c2) corpus to generate an EQA dataset. Specifically, the 1-to-N, M-to-1, and M-to-N drug-reason relations were included to form the multi-answer and multi-focus QA entries, which represent more complex and natural challenges in addition to the basic one-drug-one-reason cases. A baseline solution was developed and tested on the dataset. Results: The derived RxWhyQA dataset contains 96,939 QA entries. Among the answerable questions, 25% require multiple answers, and 2% ask about multiple drugs within one question. There are frequent cues observed around the answers in the text, and 90% of the drug and reason terms occur within the same or an adjacent sentence. The baseline EQA solution achieved a best f1-measure of 0.72 on the entire dataset, and on specific subsets, it was: 0.93 on the unanswerable questions, 0.48 on single-drug questions versus 0.60 on multi-drug questions, 0.54 on the single-answer questions versus 0.43 on multi-answer questions. Discussion: The RxWhyQA dataset can be used to train and evaluate systems that need to handle multi-answer and multi-focus questions. Specifically, multi-answer EQA appears to be challenging and therefore warrants more investment in research.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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