Population imaging studies rely upon good quality medical imagery before downstream image quantification. This study provides an automated approach to assess image quality from cardiovascular magnetic resonance (CMR) imaging at scale. We identify four common CMR imaging artefacts, including respiratory motion, cardiac motion, Gibbs ringing, and aliasing. The model can deal with images acquired in different views, including two, three, and four-chamber long-axis and short-axis cine CMR images. Two deep learning-based models in spatial and frequency domains are proposed. Besides recognising these artefacts, the proposed models are suitable to the common challenges of not having access to data labels. An unsupervised domain adaptation method and a Fourier-based convolutional neural network are proposed to overcome these challenges. We show that the proposed models reliably allow for CMR image quality assessment. The accuracies obtained for the spatial model in supervised and weakly supervised learning are 99.41+0.24 and 96.37+0.66 for the UK Biobank dataset, respectively. Using unsupervised domain adaptation can somewhat overcome the challenge of not having access to the data labels. The maximum achieved domain gap coverage in unsupervised domain adaptation is 16.86%. Domain adaptation can significantly improve a 5-class classification task and deal with considerable domain shift without data labels. Increasing the speed of training and testing can be achieved with the proposed model in the frequency domain. The frequency-domain model can achieve the same accuracy yet 1.548 times faster than the spatial model. This model can also be used directly on k-space data, and there is no need for image reconstruction.
Unsupervised domain adaptation is a type of domain adaptation and exploits labeled data from the source domain and unlabeled data from the target one. In the Cross-Modality Domain Adaptation for Medical Image Segmenta-tion challenge (crossMoDA2022), contrast enhanced T1 MRI volumes for brain are provided as the source domain data, and high-resolution T2 MRI volumes are provided as the target domain data. The crossMoDA2022 challenge contains two tasks, segmentation of vestibular schwannoma (VS) and cochlea, and clas-sification of VS with Koos grade. In this report, we presented our solution for…
We present a novel unsupervised domain adaptation method for small bowel segmentation based on feature disentanglement. To make the domain adaptation more controllable, we disentangle intensity and non-intensity features within a unique two-stream auto-encoding architecture, and selectively adapt the non-intensity features that are believed to be more transferable across domains. The segmentation prediction is performed by aggregating the disentangled features. We evaluated our method using intravenous contrast-enhanced abdominal CT scans with and without oral contrast, which are used as sourc…
Automatic segmentation of infection areas in computed tomography (CT) images has proven to be an effective diagnosis approach for COVID-19. However, due to the limited number of pixel-level annotated medical images, accurate segmentation remains a major challenge. In this paper, we propose an unsupervised domain adaptation based segmentation network to improve the segmentation performance of the infection areas in COVID-19 CT images. In particular, we propose to utilize the synthetic data and limited unlabeled real COVID-19 CT images to jointly train the segmentation network. Furthermore, we d…
The primary goal of this work is to study the effectiveness of an unsupervised domain adaptation approach for various applications such as binary classification and anomaly detection in the context of Alzheimer's disease (AD) detection for the OASIS datasets. We also explore image reconstruction and image synthesis for analyzing and generating 3D structural MRI data to establish performance benchmarks for anomaly detection. We successfully demonstrate that domain adaptation improves the performance of AD detection when implemented in both supervised and unsupervised settings. Additionally, the…
Convolutional neural networks trained on publicly available medical imaging datasets (source domain) rarely generalise to different scanners or acquisition protocols (target domain). This motivates the active field of domain adaptation. While some approaches to the problem require labeled data from the target domain, others adopt an unsupervised approach to domain adaptation (UDA). Evaluating UDA methods consists of measuring the model's ability to generalise to unseen data in the target domain. In this work, we argue that this is not as useful as adapting to the test set directly. We therefor…
The success of deep learning has set new benchmarks for many medical image analysis tasks. However, deep models often fail to generalize in the presence of distribution shifts between training (source) data and test (target) data. One method commonly employed to counter distribution shifts is domain adaptation: using samples from the target domain to learn to account for shifted distributions. In this work we propose an unsupervised domain adaptation approach that uses graph neural networks and, disentangled semantic and domain invariant structural features, allowing for better performance acr…
South China University of Technology（华南理工大学）；Pazhou Lab（琶洲实验室）；Tencent AI Lab（腾讯人工智能实验室）
Deep learning based medical image diagnosis has shown great potential in clinical medicine. However, it often suffers two major difficulties in real-world applications: 1) only limited labels are available for model training, due to expensive annotation costs over medical images; 2) labeled images may contain considerable label noise (e.g., mislabeling labels) due to diagnostic difficulties of diseases. To address these, we seek to exploit rich labeled data from relevant domains to help the learning in the target task via {Unsupervised Domain Adaptation} (UDA). Unlike most UDA methods that rel…
Unsupervised domain adaptation (UDA) is one of the key technologies to solve a problem where it is hard to obtain ground truth labels needed for supervised learning. In general, UDA assumes that all samples from source and target domains are available during the training process. However, this is not a realistic assumption under applications where data privacy issues are concerned. To overcome this limitation, UDA without source data, referred to source-free unsupervised domain adaptation (SFUDA) has been recently proposed. Here, we propose a SFUDA method for medical image segmentation. In add…
The Chinese University of Hong Kong（香港中文大学）；Imsight Medical Technology Co. Ltd.（视见医疗科技有限公司）；The Hong Kong Polytechnic University（香港理工大学）
Unsupervised domain adaptation has increasingly gained interest in medical image computing, aiming to tackle the performance degradation of deep neural networks when being deployed to unseen data with heterogeneous characteristics. In this work, we present a novel unsupervised domain adaptation framework, named as Synergistic Image and Feature Alignment (SIFA), to effectively adapt a segmentation network to an unlabeled target domain. Our proposed SIFA conducts synergistic alignment of domains from both image and feature perspectives. In particular, we simultaneously transform the appearance o…
Generalization is one of the key challenges in the clinical validation and application of deep learning models to medical images. Studies have shown that such models trained on publicly available datasets often do not work well on real-world clinical data due to the differences in patient population and image device configurations. Also, manually annotating clinical images is expensive. In this work, we propose an unsupervised domain adaptation (UDA) method using Cycle-GAN to improve the generalization ability of the model without using any additional manual annotations.
Unsupervised domain adaptation is useful in medical image segmentation. Particularly, when ground truths of the target images are not available, domain adaptation can train a target-specific model by utilizing the existing labeled images from other modalities. Most of the reported works mapped images of both the source and target domains into a common latent feature space, and then reduced their discrepancy either implicitly with adversarial training or explicitly by directly minimizing a discrepancy metric. In this work, we propose a new framework, where the latent features of both domains ar…
Huazhong University of Science & Technology（华中科技大学）；University of Technology Sydney（悉尼科技大学）；Farsee2 Tech. Co.（Farsee2科技公司）；Baidu Research（百度研究院）
We aim at the problem named One-Shot Unsupervised Domain Adaptation. Unlike traditional Unsupervised Domain Adaptation, it assumes that only one unlabeled target sample can be available when learning to adapt. This setting is realistic but more challenging, in which conventional adaptation approaches are prone to failure due to the scarce of unlabeled target data. To this end, we propose a novel Adversarial Style Mining approach, which combines the style transfer module and task-specific module into an adversarial manner. Specifically, the style transfer module iteratively searches for harder …
It is expensive to generate real-life image labels and there is a domain gap between real-life and simulated images, hence a model trained on the latter cannot adapt to the former. Solving this can totally eliminate the need for labeling real-life datasets completely. Class balanced self-training is one of the existing techniques that attempt to reduce the domain gap. Moreover, augmenting RGB with flow maps has improved performance in simple semantic segmentation and geometry is preserved across domains. Hence, by augmenting images with dense optical flow map, domain adaptation in semantic seg…
Institute of Medical Informatics, Universität zu Lübeck（吕贝克大学医学信息学研究所）
Multimodal image registration is a very challenging problem for deep learning approaches. Most current work focuses on either supervised learning that requires labelled training scans and may yield models that bias towards annotated structures or unsupervised approaches that are based on hand-crafted similarity metrics and may therefore not outperform their classical non-trained counterparts. We believe that unsupervised domain adaptation can be beneficial in overcoming the current limitations for multimodal registration, where good metrics are hard to define. Domain adaptation has so far been…
University of California, Berkeley（加利福尼亚大学伯克利分校）；Carnegie Mellon University（卡内基梅隆大学）
Large-scale labeled training datasets have enabled deep neural networks to excel across a wide range of benchmark vision tasks. However, in many applications, it is prohibitively expensive and time-consuming to obtain large quantities of labeled data. To cope with limited labeled training data, many have attempted to directly apply models trained on a large-scale labeled source domain to another sparsely labeled or unlabeled target domain. Unfortunately, direct transfer across domains often performs poorly due to the presence of domain shift or dataset bias. Domain adaptation is a machine lear…
Samsung AI Centre（三星人工智能中心）；University of Nottingham（诺丁汉大学）
This paper proposes a method to ease the unsupervised learning of object landmark detectors. Similarly to previous methods, our approach is fully unsupervised in a sense that it does not require or make any use of annotated landmarks for the target object category. Contrary to previous works, we do however assume that a landmark detector, which has already learned a structured representation for a given object category in a fully supervised manner, is available. Under this setting, our main idea boils down to adapting the given pre-trained network to the target object categories in a fully uns…
University of Florida（佛罗里达大学）；UNC Charlotte（北卡罗来纳大学夏洛特分校）；Xi’an Jiaotong University（西安交通大学）；Sensetime Research（商汤科技研究院）
Recently, deep neural networks have demonstrated comparable and even better performance with board-certified ophthalmologists in well-annotated datasets. However, the diversity of retinal imaging devices poses a significant challenge: domain shift, which leads to performance degradation when applying the deep learning models to new testing domains. In this paper, we propose a novel unsupervised domain adaptation framework, called Collaborative Feature Ensembling Adaptation (CFEA), to effectively overcome this challenge. Our proposed CFEA is an interactive paradigm which presents an exquisite o…
